mRNA_P-wetherbeei_contig54931.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54931.1.1
Unique NamemRNA_P-wetherbeei_contig54931.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54931.1.1 vs. uniprot
Match: A0A345ZYX4_9HYPH (Polyhydroxyalkanoate depolymerase n=2 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZYX4_9HYPH)

HSP 1 Score: 186 bits (472), Expect = 3.610e-55
Identity = 86/108 (79.63%), Postives = 95/108 (87.96%), Query Frame = 1
Query:    1 MPIGEFDGAATLSGDRSALMSTPMYWLYEMGHAALDPSRAFADATKLFFKNPVNPLAHTTYGKSVAAAMELFERSTRRYGRPEWDIEDTLVGGERVPVTIKTVWERPF 324
            M IGEFDGAATL GD   L++TPMYWLYEMGHAAL+P+RA ADAT+LF+KNPVNPL HTTYGKS+AAA ELFERSTRRYGRPEW I+DT VGGE+VPV I  VWERPF
Sbjct:    1 MAIGEFDGAATLPGDSGLLLATPMYWLYEMGHAALNPARALADATRLFYKNPVNPLTHTTYGKSMAAAAELFERSTRRYGRPEWMIDDTTVGGEKVPVHIVPVWERPF 108          
BLAST of mRNA_P-wetherbeei_contig54931.1.1 vs. uniprot
Match: Q7X356_9BACT (Putative intracellular PHB depolymerase n=1 Tax=uncultured Acidobacteria bacterium TaxID=171953 RepID=Q7X356_9BACT)

HSP 1 Score: 185 bits (469), Expect = 1.650e-54
Identity = 86/108 (79.63%), Postives = 95/108 (87.96%), Query Frame = 1
Query:    1 MPIGEFDGAATLSGDRSALMSTPMYWLYEMGHAALDPSRAFADATKLFFKNPVNPLAHTTYGKSVAAAMELFERSTRRYGRPEWDIEDTLVGGERVPVTIKTVWERPF 324
            + IGEFDGAA L G+ ++  STPMYWLYEMG AALDPSRA ADATKLFFKNP NPL+HTTYGKSVAAAMELFERSTRRY RPEW IE+T+VGGE VPV I+TVWE+PF
Sbjct:   21 LAIGEFDGAAALPGNAASTFSTPMYWLYEMGQAALDPSRAVADATKLFFKNPANPLSHTTYGKSVAAAMELFERSTRRYQRPEWRIEETVVGGEHVPVNIRTVWEQPF 128          
BLAST of mRNA_P-wetherbeei_contig54931.1.1 vs. uniprot
Match: A0A371BDM1_9HYPH (Polyhydroxyalkanoate depolymerase n=5 Tax=unclassified Pseudolabrys TaxID=2638514 RepID=A0A371BDM1_9HYPH)

HSP 1 Score: 178 bits (452), Expect = 3.250e-52
Identity = 81/108 (75.00%), Postives = 91/108 (84.26%), Query Frame = 1
Query:    1 MPIGEFDGAATLSGDRSALMSTPMYWLYEMGHAALDPSRAFADATKLFFKNPVNPLAHTTYGKSVAAAMELFERSTRRYGRPEWDIEDTLVGGERVPVTIKTVWERPF 324
            MPIGEFDGAA +       +S P+YWLYEMGHAALDPSR  ADATKLFF+NP NPLAHTTYGKS+AAA ELFER+TR YG+PEW I+DT+VGGERVPV I +VWERPF
Sbjct:    1 MPIGEFDGAAAMPSGSGGALSAPLYWLYEMGHAALDPSRRLADATKLFFRNPGNPLAHTTYGKSMAAAAELFERTTRVYGKPEWHIDDTVVGGERVPVNIHSVWERPF 108          
BLAST of mRNA_P-wetherbeei_contig54931.1.1 vs. uniprot
Match: A0A537NFM5_9PROT (Polyhydroxyalkanoate depolymerase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NFM5_9PROT)

HSP 1 Score: 166 bits (419), Expect = 2.730e-47
Identity = 73/108 (67.59%), Postives = 89/108 (82.41%), Query Frame = 1
Query:    1 MPIGEFDGAATLSGDRSALMSTPMYWLYEMGHAALDPSRAFADATKLFFKNPVNPLAHTTYGKSVAAAMELFERSTRRYGRPEWDIEDTLVGGERVPVTIKTVWERPF 324
            MPIGEF GA    G    +++ PMYW YEM HAAL+PSRAFADA K++FK+P+NPL++TT+GKSVAAA ELFERSTRRYG+PEW I+ T+VGGERVPV +  VW+RPF
Sbjct:    1 MPIGEFGGAPAPPGQAGPILAAPMYWFYEMSHAALNPSRAFADAAKIYFKSPINPLSYTTFGKSVAAACELFERSTRRYGQPEWAIDATVVGGERVPVHVNAVWQRPF 108          
BLAST of mRNA_P-wetherbeei_contig54931.1.1 vs. uniprot
Match: A0A1Q4DMF4_9HYPH (Esterase n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DMF4_9HYPH)

HSP 1 Score: 165 bits (417), Expect = 4.990e-47
Identity = 78/108 (72.22%), Postives = 84/108 (77.78%), Query Frame = 1
Query:    1 MPIGEFDGAATLSGDRSALMSTPMYWLYEMGHAALDPSRAFADATKLFFKNPVNPLAHTTYGKSVAAAMELFERSTRRYGRPEWDIEDTLVGGERVPVTIKTVWERPF 324
            M IGEF GAA L    S + STPMYWLYE+GHAAL+PSR  ADATKLFFKNP NP AHT YGKS+AA  ELFERSTRRY +P WDI  TLV GERVPV +  VWERPF
Sbjct:    1 MAIGEFGGAAALPATDSFIPSTPMYWLYELGHAALNPSRVVADATKLFFKNPANPFAHTLYGKSMAAGAELFERSTRRYKKPAWDIASTLVEGERVPVAVVPVWERPF 108          
BLAST of mRNA_P-wetherbeei_contig54931.1.1 vs. uniprot
Match: A0A6L5FQ25_9HYPH (Polyhydroxyalkanoate depolymerase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FQ25_9HYPH)

HSP 1 Score: 165 bits (418), Expect = 5.300e-47
Identity = 73/108 (67.59%), Postives = 89/108 (82.41%), Query Frame = 1
Query:    1 MPIGEFDGAATLSGDRSALMSTPMYWLYEMGHAALDPSRAFADATKLFFKNPVNPLAHTTYGKSVAAAMELFERSTRRYGRPEWDIEDTLVGGERVPVTIKTVWERPF 324
            M IGEF  A   S +   ++S PMYWLYEMGHAAL+P+RA ADAT+L ++NP+NPL+HTT+GKS+AAA ELFERSTRRYG+PEWDI+  +VGGERVP+ I  VWERPF
Sbjct:    1 MMIGEFGSAPAASRESEFVVSGPMYWLYEMGHAALNPARAVADATRLLYRNPINPLSHTTFGKSIAAACELFERSTRRYGKPEWDIDSVMVGGERVPIEIDVVWERPF 108          
BLAST of mRNA_P-wetherbeei_contig54931.1.1 vs. uniprot
Match: A0A537UZZ2_9PROT (Polyhydroxyalkanoate depolymerase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537UZZ2_9PROT)

HSP 1 Score: 154 bits (390), Expect = 1.070e-46
Identity = 67/106 (63.21%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 MPIGEFDGAATLSGDRSALMSTPMYWLYEMGHAALDPSRAFADATKLFFKNPVNPLAHTTYGKSVAAAMELFERSTRRYGRPEWDIEDTLVGGERVPVTIKTVWER 318
            M IGEF GA   +GD   + + P YW YEM  AAL+PSRAFADA +LF++NP NPL++T +GK++AA++ELFERSTRRYG+PEW+I  T+VGGERVPV I T+WER
Sbjct:   11 MAIGEFGGAPAATGDNGPMYAAPAYWFYEMSQAALNPSRAFADAVRLFYRNPANPLSYTAFGKTMAASLELFERSTRRYGKPEWNISSTVVGGERVPVHISTIWER 116          
BLAST of mRNA_P-wetherbeei_contig54931.1.1 vs. uniprot
Match: A0A258E5U5_9HYPH (Polyhydroxyalkanoate depolymerase n=1 Tax=Rhizobiales bacterium 32-66-8 TaxID=1970550 RepID=A0A258E5U5_9HYPH)

HSP 1 Score: 164 bits (415), Expect = 1.240e-46
Identity = 74/108 (68.52%), Postives = 87/108 (80.56%), Query Frame = 1
Query:    1 MPIGEFDGAATLSGDRSALMSTPMYWLYEMGHAALDPSRAFADATKLFFKNPVNPLAHTTYGKSVAAAMELFERSTRRYGRPEWDIEDTLVGGERVPVTIKTVWERPF 324
            M IGEF GAA L       +STP+YW+YEM HA+L+PSRA ADA+++ FKNP+NP AHTT GKS+AAA ELFER+TRRYG+P+W I DTLVGGERVPV I TVW RPF
Sbjct:    1 MAIGEFGGAAKLPATSGTALSTPLYWMYEMAHASLNPSRALADASRMLFKNPLNPAAHTTMGKSMAAAFELFERTTRRYGKPDWGITDTLVGGERVPVHINTVWSRPF 108          
BLAST of mRNA_P-wetherbeei_contig54931.1.1 vs. uniprot
Match: A0A833GFF6_9HYPH (Polyhydroxyalkanoate depolymerase n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GFF6_9HYPH)

HSP 1 Score: 160 bits (406), Expect = 2.350e-45
Identity = 71/108 (65.74%), Postives = 84/108 (77.78%), Query Frame = 1
Query:    1 MPIGEFDGAATLSGDRSALMSTPMYWLYEMGHAALDPSRAFADATKLFFKNPVNPLAHTTYGKSVAAAMELFERSTRRYGRPEWDIEDTLVGGERVPVTIKTVWERPF 324
            MPIGEF GA  L GD     ST +YW YEMG AAL P+RAFAD T+L+FKNP+NPL HTT GK++AA ME+FERSTRRYG+P+W I+  LVG ER+PV +  VWERPF
Sbjct:    1 MPIGEFGGAPRLPGDGGPAFSTGLYWAYEMGQAALHPARAFADVTRLYFKNPLNPLTHTTLGKTIAAGMEVFERSTRRYGKPDWGIDSVLVGAERLPVRVNVVWERPF 108          
BLAST of mRNA_P-wetherbeei_contig54931.1.1 vs. uniprot
Match: A0A354UW15_9PROT (Polyhydroxyalkanoate depolymerase (Fragment) n=1 Tax=Acetobacteraceae bacterium TaxID=1909293 RepID=A0A354UW15_9PROT)

HSP 1 Score: 150 bits (379), Expect = 4.100e-45
Identity = 65/108 (60.19%), Postives = 83/108 (76.85%), Query Frame = 1
Query:    1 MPIGEFDGAATLSGDRSALMSTPMYWLYEMGHAALDPSRAFADATKLFFKNPVNPLAHTTYGKSVAAAMELFERSTRRYGRPEWDIEDTLVGGERVPVTIKTVWERPF 324
            MPIGEF GA  L  + S  ++TPMYW+YEM HA+L+P+RA  DATK+  +NP+NP +HT +GKSVAA  ELFER+TRRYG+PEW + DT V G R P+ I+ VWE+PF
Sbjct:    1 MPIGEFGGAPPLVAEGSPALTTPMYWMYEMAHASLNPARAVTDATKILLQNPLNPWSHTEFGKSVAAGCELFERTTRRYGKPEWGLNDTHVSGIRTPIEIRVVWEKPF 108          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54931.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A345ZYX4_9HYPH3.610e-5579.63Polyhydroxyalkanoate depolymerase n=2 Tax=Pseudola... [more]
Q7X356_9BACT1.650e-5479.63Putative intracellular PHB depolymerase n=1 Tax=un... [more]
A0A371BDM1_9HYPH3.250e-5275.00Polyhydroxyalkanoate depolymerase n=5 Tax=unclassi... [more]
A0A537NFM5_9PROT2.730e-4767.59Polyhydroxyalkanoate depolymerase n=1 Tax=Alphapro... [more]
A0A1Q4DMF4_9HYPH4.990e-4772.22Esterase n=1 Tax=Rhizobiales bacterium 64-17 TaxID... [more]
A0A6L5FQ25_9HYPH5.300e-4767.59Polyhydroxyalkanoate depolymerase n=1 Tax=Hyphomic... [more]
A0A537UZZ2_9PROT1.070e-4663.21Polyhydroxyalkanoate depolymerase (Fragment) n=1 T... [more]
A0A258E5U5_9HYPH1.240e-4668.52Polyhydroxyalkanoate depolymerase n=1 Tax=Rhizobia... [more]
A0A833GFF6_9HYPH2.350e-4565.74Polyhydroxyalkanoate depolymerase n=1 Tax=Pseudorh... [more]
A0A354UW15_9PROT4.100e-4560.19Polyhydroxyalkanoate depolymerase (Fragment) n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54931contigP-wetherbeei_contig54931:3..326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog443598.AUFA01000001_gene1394
Preferred namephaZ
PFAMsPHB_depo_C
Model size324
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K05973
KEGG ReactionR05118
KEGG Pathwayko00650,map00650
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.7e-45
EggNOG OGsCOG4553@1|root,COG4553@2|Bacteria,1MVUH@1224|Proteobacteria,2TQXW@28211|Alphaproteobacteria,3JTT6@41294|Bradyrhizobiaceae
EC3.1.1.75
DescriptionPHB de-polymerase C-terminus
Cds size324
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186819.312437-CDS-P-wetherbeei_contig54931:2..3261683186819.312437-CDS-P-wetherbeei_contig54931:2..326Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54931 3..326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54931.1.1prot_P-wetherbeei_contig54931.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54931 3..326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54931.1.1

>prot_P-wetherbeei_contig54931.1.1 ID=prot_P-wetherbeei_contig54931.1.1|Name=mRNA_P-wetherbeei_contig54931.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
MPIGEFDGAATLSGDRSALMSTPMYWLYEMGHAALDPSRAFADATKLFFK
NPVNPLAHTTYGKSVAAAMELFERSTRRYGRPEWDIEDTLVGGERVPVTI
KTVWERPF
back to top

mRNA from alignment at P-wetherbeei_contig54931:3..326-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54931.1.1 ID=mRNA_P-wetherbeei_contig54931.1.1|Name=mRNA_P-wetherbeei_contig54931.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig54931:3..326- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGATTGGGGAATTTGACGGAGCGGCGACGCTTTCCGGCGACCGCAG CGCGTTGATGTCGACGCCGATGTATTGGCTCTATGAAATGGGCCATGCCG CGCTCGACCCGTCGCGCGCCTTCGCCGACGCCACCAAATTGTTCTTCAAG AATCCGGTCAATCCGCTGGCGCACACCACCTATGGCAAGTCGGTGGCGGC GGCGATGGAATTGTTCGAACGCTCGACGCGCCGCTACGGCCGGCCGGAAT GGGACATCGAGGACACTTTGGTCGGCGGCGAGCGCGTGCCGGTCACCATC AAGACGGTGTGGGAGCGGCCGTTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig54931:3..326-

>mRNA_P-wetherbeei_contig54931.1.1 ID=mRNA_P-wetherbeei_contig54931.1.1|Name=mRNA_P-wetherbeei_contig54931.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig54931:3..326- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGATTGGGGAATTTGACGGAGCGGCGACGCTTTCCGGCGACCGCAG
CGCGTTGATGTCGACGCCGATGTATTGGCTCTATGAAATGGGCCATGCCG
CGCTCGACCCGTCGCGCGCCTTCGCCGACGCCACCAAATTGTTCTTCAAG
AATCCGGTCAATCCGCTGGCGCACACCACCTATGGCAAGTCGGTGGCGGC
GGCGATGGAATTGTTCGAACGCTCGACGCGCCGCTACGGCCGGCCGGAAT
GGGACATCGAGGACACTTTGGTCGGCGGCGAGCGCGTGCCGGTCACCATC
AAGACGGTGTGGGAGCGGCCGTTC
back to top