mRNA_P-wetherbeei_contig5471.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5471.3.1
Unique NamemRNA_P-wetherbeei_contig5471.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5471.3.1 vs. uniprot
Match: A0A6H5JRR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRR5_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.980e-7
Identity = 59/239 (24.69%), Postives = 89/239 (37.24%), Query Frame = 3 
Query:  606 IVHCRGFSAGGTLECRHTNRGGAVMYNGIAASPDGSRVLAAECAGRAVLIFSRDTATGDLTLRQRMPLLLAPDNIVPEASAAVEAVATTACPAGGSGSSDCDGGXXXXXXXXXXXXXXXXATGETAGREKEAYIIGAVALNDFVRFAMEAGAAAAPEKVASTIRGAAVRLVVRPASADGHSGGGGGDGLDYSIEN---VVTTDGRRPGGLSGISVGIPLVGGGYMLGSCRDAGVLVCRP 1313
            I+ C G   G  ++C    +G   MYNGIA SP+G R+L ++     +LIF+R   TG L LRQR+ L  +PDN+  +   A E +                                            EAY +G +   DF +++                  AA+     P   D     GG   + +  E+       +    G L  IS  +    G  ++GS  + G L+CRP
Sbjct:  368 IIRCTGIR-GADIDCERLAKGRGAMYNGIAISPNGERLLVSDTVAMQMLIFNRSVETGALRLRQRLDLPGSPDNVEIDLFRATEGI--------------------------------------------EAYTVGLIRATDFAKYS------------------AAMVGATDPTDGDDIKMAGGFASIVFDQESGNYESNLEMWHDGSLLSISSAVSTASGARLMGSAVEEGYLLCRP 543
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BLAST of mRNA_P-wetherbeei_contig5471.3.1 vs. uniprot
Match: A0A835Z741_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z741_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.350e-5
Identity = 66/232 (28.45%), Postives = 93/232 (40.09%), Query Frame = 3 
Query:  672 AVMYNGIAASPDGSRVLAAE------------------CAGRAVLIFSRDTATGDLTLRQRMPLLLAPDNIVPEASAAVEAVATTACPAGGSGSSDCDGGXXXXXXXXXXXXXXXXATGETAGREKEAYIIGAVALNDFVRFAMEAGAAAAPEKVASTI-RGAAVRLVVRPASADGHSGGGGGDGLDYSIENVVTTDGRRPGGLSGISVGIPLVGGGYMLGSCRDAGVLVCR 1310
            A  Y+GIAASPDGSR+LA +                      AVL+F RD ATG L   + +PL +APDNI                                             +T  T+  + EAY+IG++   D+++  ++A   A    +A    RG A RLV R   ADG           Y+ E +  T+      L G+S  +P+     M GS    GVL+C+
Sbjct:  332 AHFYDGIAASPDGSRILAGDPLQTLNPPPPPFXXXXXXXPQSAVLVFDRDAATGALQYAETVPLAVAPDNI---------------------------------------------STDHTS--KTEAYMIGSIHAMDYLKVTLKAPHVAKTADLAGASGRGGATRLVRR---ADG----------SYASELLHFTN-----QLPGVSCAVPVGTARVMSGSWYSNGVLICK 498
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BLAST of mRNA_P-wetherbeei_contig5471.3.1 vs. uniprot
Match: A0A2E1XJ48_9PROT (SGL domain-containing protein n=1 Tax=Parvularcula sp. TaxID=1979207 RepID=A0A2E1XJ48_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 8.580e-5
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 3 
Query:  669 GAVMYNGIAASPDGSRVLAAECAGRAVLIFSRDTATGDLTLRQRMPLLLAPDNIVPEASAAV 854
            G    NG+A SPDG ++ AAE AG A+ +F R+  TG L+L + +PL  +PDNI  +AS AV
Sbjct:  205 GLRFANGLALSPDGGKLYAAETAGNALKVFDRNPQTGALSLSETIPLGASPDNINVDASGAV 266
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5471.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JRR5_9PHAE2.980e-724.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z741_9STRA2.350e-528.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2E1XJ48_9PROT8.580e-548.39SGL domain-containing protein n=1 Tax=Parvularcula... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5471contigP-wetherbeei_contig5471:1456..3836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1493
Hectar predicted targeting categoryother localisation
Exons4
Cds size963
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5471.3.1prot_P-wetherbeei_contig5471.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5471 1821..3671 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186816.838862-UTR-P-wetherbeei_contig5471:1455..18201683186816.838862-UTR-P-wetherbeei_contig5471:1455..1820Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5471 1456..1820 +
1683186816.898478-UTR-P-wetherbeei_contig5471:3671..38361683186816.898478-UTR-P-wetherbeei_contig5471:3671..3836Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5471 3672..3836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186816.8495305-CDS-P-wetherbeei_contig5471:1820..19461683186816.8495305-CDS-P-wetherbeei_contig5471:1820..1946Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5471 1821..1946 +
1683186816.8598666-CDS-P-wetherbeei_contig5471:2167..22971683186816.8598666-CDS-P-wetherbeei_contig5471:2167..2297Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5471 2168..2297 +
1683186816.8705487-CDS-P-wetherbeei_contig5471:2680..27381683186816.8705487-CDS-P-wetherbeei_contig5471:2680..2738Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5471 2681..2738 +
1683186816.8810601-CDS-P-wetherbeei_contig5471:3022..36711683186816.8810601-CDS-P-wetherbeei_contig5471:3022..3671Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5471 3023..3671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5471.3.1

>prot_P-wetherbeei_contig5471.3.1 ID=prot_P-wetherbeei_contig5471.3.1|Name=mRNA_P-wetherbeei_contig5471.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=321bp
MSARCVFGAAAVGGGGGGRDCGGIWQPRHRNWAGGGGRGWHAYLVSAEEL
DRTTWARKLRGGLKDALQMLATFAGLRLSTIVHCRGFSAGGTLECRHTNR
GGAVMYNGIAASPDGSRVLAAECAGRAVLIFSRDTATGDLTLRQRMPLLL
APDNIVPEASAAVEAVATTACPAGGSGSSDCDGGGSDSVGGGADSAASAA
ATGETAGREKEAYIIGAVALNDFVRFAMEAGAAAAPEKVASTIRGAAVRL
VVRPASADGHSGGGGGDGLDYSIENVVTTDGRRPGGLSGISVGIPLVGGG
YMLGSCRDAGVLVCRPRGSS*
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mRNA from alignment at P-wetherbeei_contig5471:1456..3836+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5471.3.1 ID=mRNA_P-wetherbeei_contig5471.3.1|Name=mRNA_P-wetherbeei_contig5471.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2381bp|location=Sequence derived from alignment at P-wetherbeei_contig5471:1456..3836+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCTCTCTTCCCGTGGGGACATATCCGCAGATTGGCCAAAAAATGCGTT
ACCTCTGGAGTCTCCAAAATATCCTCGTTGTTTCACTTTCTGTTTGTGCG
TTTTTGTGCAAAATCGGTGGTCGTAACATGAACCAGACTTGTCCGAAATA
TGATCCGTTTCGTACTGAATCGGTCGCTTCCAACTCCTCTGTACTCGCGG
CTCCCCCCTCTGCCTGCGTGCAGACGTTGCCGCACGACGACGGCGGCCCG
CGCAGCGAAGAAACGCCGCCGGTGGTGCTCCACTACGCGCGGACCCTCGC
GCACCCGGTCTTTGCGGCGCGGTACGGCACGCTCAACGACCTTACCGTAG
CCGGCAGCGACCTTTATGTCAGCTCGGTGCGTCTTCGGTGCAGCAGCGGT
GGGTGGCGGCGGCGGCGGGCGCGACTGCGGCGGGATCTGGCAGCCACGGC
ACCGTAACTGGGCGGGTGGAGGTGGTCGGGGCTGGCATGCGGTAAGGGCG
GTTGTCACAATGCAGCTAGCTTGAGATCTGCGCTGCGTGGATTGCCCTGA
GGTGCAGCCTAGGATTCTTCACTCTAACAGTTCCTGTCCGCGGCGGATCG
TTCTCGTAGCATCCTACGTCTCTCACCTGTCTTGCTCCCTGGCGGTGCAA
CCAAAAGAGACTTCTCTCTGCTTTGCCCTTTCCGTTTGCTTTTATTTTTT
GACGCCGAGCAGTACCTGGTATCTGCAGAGGAGCTGGACCGAACGACGTG
GGCCAGGAAGCTGCGCGGAGGCCTGAAGGACGCGCTACAGATGCTGGCTA
CCTTCGCGGGGCTCCGGCTATCGACGATCGTCCACTGCCGGGGCGAGTTT
GCTTGTTTGGTTGATTGTGGTGAGGATACGAAGGAAGGAGAAGGGGGCAT
CTGAAACTGGGGGCATCTGAAACTGTTGTCTTGTGAAATGTTGCCTAGAA
GTGTATGTGGGGTGGTTCGCCCTGGCGGAGCTTTTGCGTAAGCCGGTCCT
TGTTATTTCTGTGCGATCCCTCTTCGATCGATGCTTTTTCCCTTCAAGTT
GCCGGCAAGGATGAATTTTGCGGTCTTGATCAGCGGACCGACGCGTCGCT
TACTCGAGCGCGCGCTGCGCTGCTTGCGAAGGTGCATGCTCTGTTCACTA
CGTTTTGGTCTCGACAGTTTTCGGAACCTGCGCTCATTCACGCAGGATTG
CTCCTGGCCATACCTTTCCTTCCAGGGTTTTCTGCAGGCGGCACGTTGGA
GTGCAGACACACGAATCGTGGCGGTGCTGTCATGTGAGTGTGGGAAGCAT
ACTTCCCTATCAGCTTTGGGCCCCAACCTATGGTCTATGTTCCAGTTTGA
GGTTTGGAACGGATGGAGAAGGCGGTCTTTACGTTGTTGCGGCCATTGTT
TCAAGGCTTTGAGCGATTCTATGTGTTGTAAGGAGTCGTATGGTTTGGCA
TGAAAAGTGCAAAAAGAGTACGTGAGGCTACTTGAATCTGGAAAGCCCCA
CCGCCCATCCTGTCTGGCGGCATCCATCCTCCGTTTTTCTGATGCTCACC
TAAACTCTAACGCGCAGGTACAACGGCATCGCAGCCAGCCCGGACGGGTC
GCGCGTCCTGGCCGCCGAATGCGCTGGGCGCGCCGTCCTCATCTTCTCTC
GCGACACCGCCACCGGCGACCTCACTTTGCGGCAGCGCATGCCGCTTCTG
CTTGCCCCGGACAATATCGTGCCGGAAGCCTCAGCGGCAGTGGAGGCGGT
GGCAACAACGGCGTGTCCGGCAGGTGGCAGTGGCAGCAGCGACTGCGACG
GCGGCGGCAGCGACAGCGTTGGCGGCGGCGCTGATAGTGCGGCGTCCGCC
GCCGCCACCGGTGAGACCGCCGGCAGGGAGAAAGAGGCTTACATCATCGG
CGCCGTGGCGCTCAATGACTTCGTGCGCTTCGCGATGGAGGCCGGCGCGG
CGGCGGCGCCCGAAAAAGTCGCTTCCACCATCCGCGGCGCGGCCGTGCGG
CTGGTCGTCCGACCGGCCAGCGCCGACGGCCATAGCGGCGGCGGTGGCGG
GGACGGATTGGACTATTCGATCGAAAATGTTGTCACAACGGACGGCCGCC
GGCCGGGTGGACTCTCGGGGATCTCAGTCGGCATACCGCTCGTCGGCGGC
GGCTACATGCTCGGTTCGTGCAGAGACGCCGGCGTCTTGGTTTGCCGGCC
GCGCGGCTCGTCGTAAAGCTACCCATAAATTGTATGATAGACGGGATGGC
TGTATAAAAGAATCATGCTGCGAATAGTTAGTTGCATGGTAGCACCAGAT
CTAGTCTAAGTTTGGGCGTGCTTAGCCAGGCGGCTGTGAAGCACCTAAGC
CTCTTCAGCAGTGAGGTGGACGAGGCAAAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5471:1456..3836+

>mRNA_P-wetherbeei_contig5471.3.1 ID=mRNA_P-wetherbeei_contig5471.3.1|Name=mRNA_P-wetherbeei_contig5471.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=963bp|location=Sequence derived from alignment at P-wetherbeei_contig5471:1456..3836+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCAGCTCGGTGCGTCTTCGGTGCAGCAGCGGTGGGTGGCGGCGGCGG
CGGGCGCGACTGCGGCGGGATCTGGCAGCCACGGCACCGTAACTGGGCGG
GTGGAGGTGGTCGGGGCTGGCATGCGTACCTGGTATCTGCAGAGGAGCTG
GACCGAACGACGTGGGCCAGGAAGCTGCGCGGAGGCCTGAAGGACGCGCT
ACAGATGCTGGCTACCTTCGCGGGGCTCCGGCTATCGACGATCGTCCACT
GCCGGGGGTTTTCTGCAGGCGGCACGTTGGAGTGCAGACACACGAATCGT
GGCGGTGCTGTCATGTACAACGGCATCGCAGCCAGCCCGGACGGGTCGCG
CGTCCTGGCCGCCGAATGCGCTGGGCGCGCCGTCCTCATCTTCTCTCGCG
ACACCGCCACCGGCGACCTCACTTTGCGGCAGCGCATGCCGCTTCTGCTT
GCCCCGGACAATATCGTGCCGGAAGCCTCAGCGGCAGTGGAGGCGGTGGC
AACAACGGCGTGTCCGGCAGGTGGCAGTGGCAGCAGCGACTGCGACGGCG
GCGGCAGCGACAGCGTTGGCGGCGGCGCTGATAGTGCGGCGTCCGCCGCC
GCCACCGGTGAGACCGCCGGCAGGGAGAAAGAGGCTTACATCATCGGCGC
CGTGGCGCTCAATGACTTCGTGCGCTTCGCGATGGAGGCCGGCGCGGCGG
CGGCGCCCGAAAAAGTCGCTTCCACCATCCGCGGCGCGGCCGTGCGGCTG
GTCGTCCGACCGGCCAGCGCCGACGGCCATAGCGGCGGCGGTGGCGGGGA
CGGATTGGACTATTCGATCGAAAATGTTGTCACAACGGACGGCCGCCGGC
CGGGTGGACTCTCGGGGATCTCAGTCGGCATACCGCTCGTCGGCGGCGGC
TACATGCTCGGTTCGTGCAGAGACGCCGGCGTCTTGGTTTGCCGGCCGCG
CGGCTCGTCGTAA
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