mRNA_P-wetherbeei_contig5450.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5450.1.1
Unique NamemRNA_P-wetherbeei_contig5450.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5450.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5450contigP-wetherbeei_contig5450:837..1911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1075
Hectar predicted targeting categoryother localisation
Exons1
Cds size642
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186814.4728167-UTR-P-wetherbeei_contig5450:836..9551683186814.4728167-UTR-P-wetherbeei_contig5450:836..955Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5450 837..955 +
1683186814.491879-UTR-P-wetherbeei_contig5450:1597..19111683186814.491879-UTR-P-wetherbeei_contig5450:1597..1911Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5450 1598..1911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186814.482521-CDS-P-wetherbeei_contig5450:955..15971683186814.482521-CDS-P-wetherbeei_contig5450:955..1597Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5450 956..1597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5450.1.1prot_P-wetherbeei_contig5450.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5450 956..1597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5450.1.1

>prot_P-wetherbeei_contig5450.1.1 ID=prot_P-wetherbeei_contig5450.1.1|Name=mRNA_P-wetherbeei_contig5450.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=214bp
MIDLAENTDEAEAVEAMAAAKPEAMADAASVPGPSAVEEAVAVAAAVATA
AFTATPNAMVEVAADAASEADSATMLEAASAPTAGEAAMATPSAVEMAGG
DVTADAVDAAPSADGSGGGGDDAGGRDALAVNGCQCSSMTFASTPPTPAA
RVAAPARGCDDQWEEAKPAEAAAVPKRPPRHSKAPRGKRGAGDGTNAAEG
GTRLSSKRPRKTG*
back to top

mRNA from alignment at P-wetherbeei_contig5450:837..1911+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5450.1.1 ID=mRNA_P-wetherbeei_contig5450.1.1|Name=mRNA_P-wetherbeei_contig5450.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1075bp|location=Sequence derived from alignment at P-wetherbeei_contig5450:837..1911+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGCGCTTCGCTGAATGCGGAGCCGGTCACTGATGCGGCAGCCAGC
GTTCCGACAACCGAAGCTGGGACCGAGGCACCCACAGCGGCGACGGAAGT
GAAGGTCACGGCGGTGGACATGATCGATCTGGCAGAGAACACAGATGAGG
CCGAGGCGGTTGAGGCGATGGCGGCGGCGAAGCCCGAGGCAATGGCCGAT
GCGGCTTCAGTGCCGGGGCCAAGTGCTGTGGAAGAGGCGGTCGCGGTGGC
GGCGGCGGTGGCCACCGCGGCTTTTACGGCGACGCCGAACGCCATGGTAG
AGGTGGCTGCAGATGCAGCGTCGGAGGCGGACTCAGCAACGATGCTGGAG
GCGGCCTCGGCGCCGACGGCAGGTGAGGCTGCGATGGCAACGCCGTCCGC
CGTAGAGATGGCAGGCGGCGACGTTACCGCAGATGCCGTGGACGCTGCGC
CATCAGCAGACGGCAGCGGCGGGGGCGGCGATGACGCCGGCGGCAGGGAT
GCGCTTGCCGTGAATGGTTGCCAGTGCTCCAGCATGACGTTTGCGTCGAC
GCCGCCGACGCCGGCGGCCAGAGTTGCGGCGCCTGCCCGCGGCTGCGACG
ACCAGTGGGAGGAGGCCAAGCCAGCAGAGGCGGCGGCGGTTCCGAAACGA
CCACCGCGTCACTCAAAGGCACCTCGCGGAAAAAGAGGCGCCGGCGACGG
GACGAACGCGGCTGAGGGCGGCACGAGGCTCTCGTCCAAGCGCCCGCGCA
AGACGGGCTGACGCTGTGCTGCTCCGCGCTTGCGGTGGCTGACTGATGTC
CTCACATGAATGTTGAGGCTGGCCGCTGTTCTTTTAGCCATATATCCTAT
TTTCGTTGGAGCAGCGCTGAGCTTTCCGACGAAGCACGGCGGCCGGAATC
GGTCTTCATCAAGGTGGCGACGTTTTTATTGACGGCTGGGCATTGGCCAC
CCAGGGGCGCAGAATTATGTGCAGCCAGGCCGAGCGGGCCGAGCGAGACA
ACACATGGCAGAGAGCCTTGCACCGCATCCGACAGGAGTGGAGCGGCTAA
GCATTAAAAGCATCTTAAATTGTGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5450:837..1911+

>mRNA_P-wetherbeei_contig5450.1.1 ID=mRNA_P-wetherbeei_contig5450.1.1|Name=mRNA_P-wetherbeei_contig5450.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=642bp|location=Sequence derived from alignment at P-wetherbeei_contig5450:837..1911+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGATCTGGCAGAGAACACAGATGAGGCCGAGGCGGTTGAGGCGAT
GGCGGCGGCGAAGCCCGAGGCAATGGCCGATGCGGCTTCAGTGCCGGGGC
CAAGTGCTGTGGAAGAGGCGGTCGCGGTGGCGGCGGCGGTGGCCACCGCG
GCTTTTACGGCGACGCCGAACGCCATGGTAGAGGTGGCTGCAGATGCAGC
GTCGGAGGCGGACTCAGCAACGATGCTGGAGGCGGCCTCGGCGCCGACGG
CAGGTGAGGCTGCGATGGCAACGCCGTCCGCCGTAGAGATGGCAGGCGGC
GACGTTACCGCAGATGCCGTGGACGCTGCGCCATCAGCAGACGGCAGCGG
CGGGGGCGGCGATGACGCCGGCGGCAGGGATGCGCTTGCCGTGAATGGTT
GCCAGTGCTCCAGCATGACGTTTGCGTCGACGCCGCCGACGCCGGCGGCC
AGAGTTGCGGCGCCTGCCCGCGGCTGCGACGACCAGTGGGAGGAGGCCAA
GCCAGCAGAGGCGGCGGCGGTTCCGAAACGACCACCGCGTCACTCAAAGG
CACCTCGCGGAAAAAGAGGCGCCGGCGACGGGACGAACGCGGCTGAGGGC
GGCACGAGGCTCTCGTCCAAGCGCCCGCGCAAGACGGGCTGA
back to top