mRNA_P-wetherbeei_contig54444.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54444.1.1
Unique NamemRNA_P-wetherbeei_contig54444.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54444.1.1 vs. uniprot
Match: A0A521YRC4_9PROT (MFS transporter n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YRC4_9PROT)

HSP 1 Score: 270 bits (690), Expect = 5.360e-87
Identity = 136/168 (80.95%), Postives = 143/168 (85.12%), Query Frame = 1
Query:   22 RALGADVRMREVWAWSMYDFANSGYTTVVITAVFSAYFTSVVAGKAVWGTFAWTAALSVSYALIMVTAPLVGAWADAHAAKKRLLALSTAGCVACTALLWFAGPGTFALTVVLVVLSNYFFGSGENLIAAFLPELADSEAMGRVSGWGWSVGYLGGLLSLGLCLAYIT 525
            RAL ++VR REVWAWSMYDFANSGYTTVVITAVF AYF SVV     W TFAWTAALSVSYALI+VT PLVGAWAD HAAKKRLL +ST GCV  TALLWFAGPG  AL + LV LSNYFFG GENLIAAFLPELADS AMGRVSGWGWS GYLGGL +LG+CLAYIT
Sbjct:    3 RALASEVRPREVWAWSMYDFANSGYTTVVITAVFGAYFVSVVTDNQPWATFAWTAALSVSYALILVTGPLVGAWADTHAAKKRLLLVSTIGCVLFTALLWFAGPGEAALALALVALSNYFFGVGENLIAAFLPELADSRAMGRVSGWGWSFGYLGGLAALGICLAYIT 170          
BLAST of mRNA_P-wetherbeei_contig54444.1.1 vs. uniprot
Match: A0A522VY50_9PROT (MFS transporter (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A522VY50_9PROT)

HSP 1 Score: 258 bits (658), Expect = 2.250e-83
Identity = 130/169 (76.92%), Postives = 145/169 (85.80%), Query Frame = 1
Query:   19 RRALGADVRMREVWAWSMYDFANSGYTTVVITAVFSAYFTSVVAGKAVWGTFAWTAALSVSYALIMVTAPLVGAWADAHAAKKRLLALSTAGCVACTALLWFAGPGTFALTVVLVVLSNYFFGSGENLIAAFLPELADSEAMGRVSGWGWSVGYLGGLLSLGLCLAYIT 525
            R AL A V +REVWAWSMYDFANSGYTTVVITAVF+AYF + VAGKA W TFAWTAALSVSY  ++++APLVGAWADAHAAKKRLL  +T GCV  TA L+FA PG  AL +VLVVLSN+FF +GENLIAAFLPELADS+AMGRVSGWGW+ GYLGGL SLG+ LAYIT
Sbjct:    6 RPALAAAVTLREVWAWSMYDFANSGYTTVVITAVFNAYFVAAVAGKAPWATFAWTAALSVSYLAVLLSAPLVGAWADAHAAKKRLLLGATFGCVLFTAALYFAAPGAVALAIVLVVLSNFFFSTGENLIAAFLPELADSQAMGRVSGWGWAFGYLGGLASLGISLAYIT 174          
BLAST of mRNA_P-wetherbeei_contig54444.1.1 vs. uniprot
Match: A0A7Y8M424_9RHOO (MFS transporter (Fragment) n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A7Y8M424_9RHOO)

HSP 1 Score: 256 bits (655), Expect = 1.470e-81
Identity = 125/169 (73.96%), Postives = 143/169 (84.62%), Query Frame = 1
Query:   19 RRALGADVRMREVWAWSMYDFANSGYTTVVITAVFSAYFTSVVAGKAVWGTFAWTAALSVSYALIMVTAPLVGAWADAHAAKKRLLALSTAGCVACTALLWFAGPGTFALTVVLVVLSNYFFGSGENLIAAFLPELADSEAMGRVSGWGWSVGYLGGLLSLGLCLAYIT 525
            RR L   VR REVWAW+MYDFANSG+TTVVITA+F+AYF +VVAG A WGTFAWTAALSVSYALI+VTAP VGA+AD HAAKKRLLA+ST GCVACTALLWFA PG     +  V+ +N+FFG+GENLIAAFLPELA   A+GRVSGWGW +GYLGGL +LG+CLAY+ 
Sbjct:    3 RRVLAPGVRPREVWAWAMYDFANSGFTTVVITALFNAYFVAVVAGDAPWGTFAWTAALSVSYALIIVTAPQVGAYADRHAAKKRLLAISTLGCVACTALLWFAQPGAIGFAIGCVIAANFFFGTGENLIAAFLPELARPRALGRVSGWGWGLGYLGGLFTLGVCLAYVA 171          
BLAST of mRNA_P-wetherbeei_contig54444.1.1 vs. uniprot
Match: A0A838JJ68_9BURK (MFS transporter n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A838JJ68_9BURK)

HSP 1 Score: 254 bits (649), Expect = 1.060e-80
Identity = 124/168 (73.81%), Postives = 146/168 (86.90%), Query Frame = 1
Query:   22 RALGADVRMREVWAWSMYDFANSGYTTVVITAVFSAYFTSVVAGKAVWGTFAWTAALSVSYALIMVTAPLVGAWADAHAAKKRLLALSTAGCVACTALLWFAGPGTFALTVVLVVLSNYFFGSGENLIAAFLPELADSEAMGRVSGWGWSVGYLGGLLSLGLCLAYIT 525
            +AL  DV+ REVWAW+MYDFANSGYTTVVITAVFSAYF SVV+G A W TFAWTAAL+VSYALIM+TAP++GA+AD   AKK+LL L+T GCV CTA L FAGPG+  L ++ V+LSNYF+GSGENLIAAFLPELADS ++G+VSGWGWS GYLGGL++LGLCLAY+ 
Sbjct:    3 QALSDDVKPREVWAWAMYDFANSGYTTVVITAVFSAYFVSVVSGNAPWATFAWTAALAVSYALIMLTAPIMGAYADVRRAKKKLLFLTTVGCVLCTAGLAFAGPGSVGLALLFVILSNYFYGSGENLIAAFLPELADSRSLGKVSGWGWSFGYLGGLVALGLCLAYVA 170          
BLAST of mRNA_P-wetherbeei_contig54444.1.1 vs. uniprot
Match: UPI001AD48CB5 (Uncharacterized protein n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=UPI001AD48CB5)

HSP 1 Score: 253 bits (646), Expect = 5.330e-80
Identity = 123/174 (70.69%), Postives = 143/174 (82.18%), Query Frame = 1
Query:    4 TSPKPRRALGADVRMREVWAWSMYDFANSGYTTVVITAVFSAYFTSVVAGKAVWGTFAWTAALSVSYALIMVTAPLVGAWADAHAAKKRLLALSTAGCVACTALLWFAGPGTFALTVVLVVLSNYFFGSGENLIAAFLPELADSEAMGRVSGWGWSVGYLGGLLSLGLCLAYIT 525
            T P   R LG DV  RE WAW+MYDFANSGYTTVVITAVF+AYF +VVA +A W T AWTA L+ SYALI++TAPL+GAWADA AAKKRLLA +T GCV  TA L F+GPGT AL +  +++SN+FFG+GENLIAAFLPELA   AMGRVSGWGWS+GYLGGLLSLG CLA+++
Sbjct:    5 TMPAANRPLGNDVTPREAWAWAMYDFANSGYTTVVITAVFNAYFVAVVAQRATWATLAWTATLAASYALIVLTAPLIGAWADARAAKKRLLAFATVGCVLSTAALCFSGPGTLALAIACIIVSNFFFGTGENLIAAFLPELAKGRAMGRVSGWGWSLGYLGGLLSLGACLAWLS 178          
BLAST of mRNA_P-wetherbeei_contig54444.1.1 vs. uniprot
Match: A0A6N7B2K2_9PROT (Major facilitator n=1 Tax=Gallionellaceae bacterium TaxID=2052162 RepID=A0A6N7B2K2_9PROT)

HSP 1 Score: 251 bits (640), Expect = 2.460e-79
Identity = 121/169 (71.60%), Postives = 145/169 (85.80%), Query Frame = 1
Query:   19 RRALGADVRMREVWAWSMYDFANSGYTTVVITAVFSAYFTSVVAGKAVWGTFAWTAALSVSYALIMVTAPLVGAWADAHAAKKRLLALSTAGCVACTALLWFAGPGTFALTVVLVVLSNYFFGSGENLIAAFLPELADSEAMGRVSGWGWSVGYLGGLLSLGLCLAYIT 525
            R +L   V  RE WAW+MYDFANSGYTTVVITA+F+AYF +VVAG   W TFAWTAAL+VSYA IM TAPL+GA+ADA+AAKK+LLALST GCV  TALL F+GPG+  LT+ L+VLSN+F+GSGENL+AAFLPELA S+++G+VSGWGWS GY+GGL+SLG CLAY+T
Sbjct:    2 RHSLANTVTFREAWAWAMYDFANSGYTTVVITAIFNAYFVAVVAGNQPWATFAWTAALAVSYAAIMFTAPLIGAYADAYAAKKKLLALSTIGCVVFTALLMFSGPGSLWLTIALIVLSNFFYGSGENLVAAFLPELAQSKSLGKVSGWGWSFGYVGGLVSLGACLAYVT 170          
BLAST of mRNA_P-wetherbeei_contig54444.1.1 vs. uniprot
Match: A0A7L6ABM5_9RHOO (MFS transporter n=1 Tax=Dechloromonas sp. TaxID=1917218 RepID=A0A7L6ABM5_9RHOO)

HSP 1 Score: 248 bits (634), Expect = 1.970e-78
Identity = 115/166 (69.28%), Postives = 142/166 (85.54%), Query Frame = 1
Query:   28 LGADVRMREVWAWSMYDFANSGYTTVVITAVFSAYFTSVVAGKAVWGTFAWTAALSVSYALIMVTAPLVGAWADAHAAKKRLLALSTAGCVACTALLWFAGPGTFALTVVLVVLSNYFFGSGENLIAAFLPELADSEAMGRVSGWGWSVGYLGGLLSLGLCLAYIT 525
            L   VR RE W+W+ YDFANSGYTTVV+TA+F+AYF +VVAG A W TFAWTAALSVSYA I+VTAPL+GAWADAHAAKKR+LA++T GC+A TA L+FAGPG FA+ +  +V+SN+FFG+GEN+IAAFLPELA   A+G+VSGWGW+ GY+GGLLSLG+C A++ 
Sbjct:    8 LNEGVRPREAWSWACYDFANSGYTTVVVTAIFNAYFVAVVAGNATWATFAWTAALSVSYAAIVVTAPLIGAWADAHAAKKRVLAITTVGCIAGTAALYFAGPGNFAIAIAALVISNFFFGTGENVIAAFLPELAKGSALGKVSGWGWAFGYVGGLLSLGVCFAFVV 173          
BLAST of mRNA_P-wetherbeei_contig54444.1.1 vs. uniprot
Match: Q0KC48_CUPNH (Permease of the major facilitator superfamily n=11 Tax=Burkholderiaceae TaxID=119060 RepID=Q0KC48_CUPNH)

HSP 1 Score: 247 bits (630), Expect = 1.870e-77
Identity = 121/172 (70.35%), Postives = 144/172 (83.72%), Query Frame = 1
Query:   10 PKPRRALGADVRMREVWAWSMYDFANSGYTTVVITAVFSAYFTSVVAGKAVWGTFAWTAALSVSYALIMVTAPLVGAWADAHAAKKRLLALSTAGCVACTALLWFAGPGTFALTVVLVVLSNYFFGSGENLIAAFLPELADSEAMGRVSGWGWSVGYLGGLLSLGLCLAYIT 525
            P    ALG DVR REVWAW+MYDFANSGYTTVVITA+F+AYF +VVAG A W T AWTAALS+SYAL++++APLVGA+AD  AAKK LLA++TAGCV  TALL+FA PGT  L ++ VVLSN+FFGSGENLIAAFLP L+ + A+GRVSGWGWS+GY+GGL +LG CL Y+ 
Sbjct:   13 PSEPSALGVDVRPREVWAWAMYDFANSGYTTVVITALFNAYFVAVVAGNASWATLAWTAALSLSYALVVLSAPLVGAYADLRAAKKPLLAVTTAGCVVFTALLYFAQPGTLGLAILCVVLSNFFFGSGENLIAAFLPSLSTTRALGRVSGWGWSLGYIGGLATLGACLLYVN 184          
BLAST of mRNA_P-wetherbeei_contig54444.1.1 vs. uniprot
Match: A0A258ZGF5_9PROT (MFS transporter n=1 Tax=Gallionellales bacterium 24-53-125 TaxID=1970510 RepID=A0A258ZGF5_9PROT)

HSP 1 Score: 246 bits (627), Expect = 2.290e-77
Identity = 116/169 (68.64%), Postives = 145/169 (85.80%), Query Frame = 1
Query:   19 RRALGADVRMREVWAWSMYDFANSGYTTVVITAVFSAYFTSVVAGKAVWGTFAWTAALSVSYALIMVTAPLVGAWADAHAAKKRLLALSTAGCVACTALLWFAGPGTFALTVVLVVLSNYFFGSGENLIAAFLPELADSEAMGRVSGWGWSVGYLGGLLSLGLCLAYIT 525
            +++L  +V+  EVWAW+MYDFANSGYTTVVITA+F+AYF +V+AG A W T AWT AL+ SYALIM  AP++GA+ADA+AAKK+LLAL+T GCV  TALL++AGPGT  L + L++LSN+F+GSGENLIAAFLPELA   A+GRVSGWGWS+GY+GGL+SLG CLAY+T
Sbjct:    2 QKSLATNVKRHEVWAWAMYDFANSGYTTVVITAIFNAYFVAVIAGNAPWATLAWTLALATSYALIMFVAPVIGAYADAYAAKKKLLALTTTGCVIFTALLFYAGPGTLWLAIPLIILSNFFYGSGENLIAAFLPELARGRALGRVSGWGWSLGYIGGLVSLGACLAYVT 170          
BLAST of mRNA_P-wetherbeei_contig54444.1.1 vs. uniprot
Match: UPI001EF48914 (MFS transporter n=1 Tax=Candidatus Nitrotoga sp. 1052 TaxID=2886964 RepID=UPI001EF48914)

HSP 1 Score: 246 bits (628), Expect = 2.430e-77
Identity = 121/176 (68.75%), Postives = 149/176 (84.66%), Query Frame = 1
Query:    1 MTSPKP-RRALGADVRMREVWAWSMYDFANSGYTTVVITAVFSAYFTSVVAGKAVWGTFAWTAALSVSYALIMVTAPLVGAWADAHAAKKRLLALSTAGCVACTALLWFAGPGTFALTVVLVVLSNYFFGSGENLIAAFLPELADSEAMGRVSGWGWSVGYLGGLLSLGLCLAYIT 525
            MT PK  +  L  DVR RE+WAW+MYDFANSGYTTVVITA+F+AYF +VVAG A W TFAWTAALSVSY LI+++APL+GA+AD HA KK+LLA++T GCV  T+LL FA P T  LT+V V++SN+FFGSGENLIAAFLPE++ + AMGR+SGWGWS+GY+GGL++LGLCL Y+T
Sbjct:    1 MTMPKHFQTMLRPDVRPRELWAWAMYDFANSGYTTVVITALFNAYFVAVVAGNAPWATFAWTAALSVSYMLIVLSAPLIGAYADLHAVKKKLLAITTVGCVLFTSLLSFAQPDTLWLTIVCVIVSNFFFGSGENLIAAFLPEISKTRAMGRISGWGWSLGYIGGLVTLGLCLMYVT 176          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54444.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521YRC4_9PROT5.360e-8780.95MFS transporter n=1 Tax=Betaproteobacteria bacteri... [more]
A0A522VY50_9PROT2.250e-8376.92MFS transporter (Fragment) n=1 Tax=Betaproteobacte... [more]
A0A7Y8M424_9RHOO1.470e-8173.96MFS transporter (Fragment) n=1 Tax=Rhodocyclaceae ... [more]
A0A838JJ68_9BURK1.060e-8073.81MFS transporter n=1 Tax=Burkholderiales bacterium ... [more]
UPI001AD48CB55.330e-8070.69Uncharacterized protein n=1 Tax=Rhodocyclaceae bac... [more]
A0A6N7B2K2_9PROT2.460e-7971.60Major facilitator n=1 Tax=Gallionellaceae bacteriu... [more]
A0A7L6ABM5_9RHOO1.970e-7869.28MFS transporter n=1 Tax=Dechloromonas sp. TaxID=19... [more]
Q0KC48_CUPNH1.870e-7770.35Permease of the major facilitator superfamily n=11... [more]
A0A258ZGF5_9PROT2.290e-7768.64MFS transporter n=1 Tax=Gallionellales bacterium 2... [more]
UPI001EF489142.430e-7768.75MFS transporter n=1 Tax=Candidatus Nitrotoga sp. 1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54444contigP-wetherbeei_contig54444:1..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1366050.N234_10470
PFAMsATG22
Model size525
Max annot lvl28216|Betaproteobacteria
KEGG koko:K06902
KEGG TC2.A.1.24,9.A.15.1
KEGG Pathwayko04138,map04138
Hectar predicted targeting categorysignal anchor
Exons1
Evalue3.03e-79
EggNOG OGsCOG2270@1|root,COG2270@2|Bacteria,1MWXB@1224|Proteobacteria,2VKNE@28216|Betaproteobacteria,1KBP4@119060|Burkholderiaceae
DescriptionVacuole effluxer Atg22 like
Cds size525
COG categoryS
BRITEko00000,ko00001,ko02000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186813.6015902-CDS-P-wetherbeei_contig54444:0..5251683186813.6015902-CDS-P-wetherbeei_contig54444:0..525Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54444 1..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54444.1.1prot_P-wetherbeei_contig54444.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54444 1..525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54444.1.1

>prot_P-wetherbeei_contig54444.1.1 ID=prot_P-wetherbeei_contig54444.1.1|Name=mRNA_P-wetherbeei_contig54444.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
MTSPKPRRALGADVRMREVWAWSMYDFANSGYTTVVITAVFSAYFTSVVA
GKAVWGTFAWTAALSVSYALIMVTAPLVGAWADAHAAKKRLLALSTAGCV
ACTALLWFAGPGTFALTVVLVVLSNYFFGSGENLIAAFLPELADSEAMGR
VSGWGWSVGYLGGLLSLGLCLAYIT
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mRNA from alignment at P-wetherbeei_contig54444:1..525-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54444.1.1 ID=mRNA_P-wetherbeei_contig54444.1.1|Name=mRNA_P-wetherbeei_contig54444.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig54444:1..525- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCTCCCCGAAACCCCGCCGCGCGCTCGGCGCCGACGTTCGCATGCG GGAAGTCTGGGCGTGGAGCATGTACGACTTCGCAAACTCGGGGTACACCA CGGTCGTGATCACGGCGGTGTTCAGCGCCTACTTCACCTCGGTCGTGGCG GGCAAGGCCGTGTGGGGTACGTTCGCATGGACCGCGGCCCTGTCGGTGTC CTATGCCCTCATCATGGTCACGGCCCCGCTCGTGGGCGCGTGGGCCGACG CGCATGCGGCCAAGAAGAGGCTGCTGGCCCTCAGTACCGCCGGTTGCGTG GCCTGCACCGCCCTGCTTTGGTTCGCAGGGCCGGGCACGTTCGCGCTCAC GGTCGTGCTGGTCGTGCTGTCGAATTATTTCTTCGGCAGCGGCGAAAACC TCATCGCCGCGTTCCTGCCGGAACTGGCCGACTCCGAAGCCATGGGCCGG GTGTCAGGCTGGGGCTGGTCCGTGGGCTACCTCGGCGGCCTGCTGTCGCT CGGCCTGTGCCTCGCCTACATCACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54444:1..525-

>mRNA_P-wetherbeei_contig54444.1.1 ID=mRNA_P-wetherbeei_contig54444.1.1|Name=mRNA_P-wetherbeei_contig54444.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig54444:1..525- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCTCCCCGAAACCCCGCCGCGCGCTCGGCGCCGACGTTCGCATGCG
GGAAGTCTGGGCGTGGAGCATGTACGACTTCGCAAACTCGGGGTACACCA
CGGTCGTGATCACGGCGGTGTTCAGCGCCTACTTCACCTCGGTCGTGGCG
GGCAAGGCCGTGTGGGGTACGTTCGCATGGACCGCGGCCCTGTCGGTGTC
CTATGCCCTCATCATGGTCACGGCCCCGCTCGTGGGCGCGTGGGCCGACG
CGCATGCGGCCAAGAAGAGGCTGCTGGCCCTCAGTACCGCCGGTTGCGTG
GCCTGCACCGCCCTGCTTTGGTTCGCAGGGCCGGGCACGTTCGCGCTCAC
GGTCGTGCTGGTCGTGCTGTCGAATTATTTCTTCGGCAGCGGCGAAAACC
TCATCGCCGCGTTCCTGCCGGAACTGGCCGACTCCGAAGCCATGGGCCGG
GTGTCAGGCTGGGGCTGGTCCGTGGGCTACCTCGGCGGCCTGCTGTCGCT
CGGCCTGTGCCTCGCCTACATCACC
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