mRNA_P-wetherbeei_contig5441.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5441.2.1
Unique NamemRNA_P-wetherbeei_contig5441.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5441.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5441contigP-wetherbeei_contig5441:3116..3679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009036129.1
PFAMsAldo_ket_red
Model size348
Max annot lvl2759|Eukaryota
KEGG rclassRC00066,RC00161
KEGG koko:K00064
KEGG ReactionR07675,R08926
KEGG Pathwayko00051,ko00053,ko01100,ko01110,ko01120,map00051,map00053,map01100,map01110,map01120
KEGG ModuleM00114
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.77e-07
EggNOG OGsCOG0667@1|root,KOG1576@2759|Eukaryota
EC1.1.1.122
DescriptionD-arabinose 1-dehydrogenase (NAD) activity
Cds size348
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186813.2280087-CDS-P-wetherbeei_contig5441:3115..32171683186813.2280087-CDS-P-wetherbeei_contig5441:3115..3217Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5441 3116..3217 -
1683186813.240789-CDS-P-wetherbeei_contig5441:3433..36791683186813.240789-CDS-P-wetherbeei_contig5441:3433..3679Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5441 3434..3679 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5441.2.1prot_P-wetherbeei_contig5441.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5441 3116..3679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5441.2.1

>prot_P-wetherbeei_contig5441.2.1 ID=prot_P-wetherbeei_contig5441.2.1|Name=mRNA_P-wetherbeei_contig5441.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
GVASLAAVALGASSVLATDVYTVPLALIDRAAKLQQEQQLALSAVVTFND
DVLRTCIFDVCGPEPLPPAGVVVISDMFYNHTVAWHVGRRAVEAWDRGST
TVVSDPGRSGRTAFFA
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mRNA from alignment at P-wetherbeei_contig5441:3116..3679-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5441.2.1 ID=mRNA_P-wetherbeei_contig5441.2.1|Name=mRNA_P-wetherbeei_contig5441.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=564bp|location=Sequence derived from alignment at P-wetherbeei_contig5441:3116..3679- (Phaeothamnion wetherbeei SAG_119_79)
GGCGTCGCATCACTGGCAGCAGTGGCGTTGGGTGCCAGTTCCGTCCTCGC
CACCGATGTCTACACCGTCCCGCTCGCTCTCATTGATCGCGCTGCCAAGT
TGCAGCAGGAGCAACAGCTGGCTTTATCTGCTGTAGTGACATTCAATGAT
GATGTGCTGCGGACCTGCATCTTTGACGTCTGCGGCCCGGAGCCGCTGCC
GCCGGCGGGTGTAGTTGTCATTTCGGACATGTTTTACAACCACACGGTAA
TTGGAGGGGATTTTGCTTCAACTGCGAGAATCTGTCGCTGCCCGTCTCAT
TAGTCTCTTCTCGCCGCCTCCTTTCGCGCAAGGGCCACTGGCGCAGCCAT
AAAGTAACGTTCTGTTTCGCTTGCTGATCTCCCGCTATTCCTCGTACACT
GGTCGCCACTGCGACCTACTATAACCTTTCGCTATCGTTACTTCCGGCGA
TTGACTGGACAGGTTGCGTGGCACGTCGGAAGGCGCGCGGTGGAGGCGTG
GGACCGTGGCAGCACTACGGTGGTCTCTGACCCTGGCAGATCGGGCCGTA
CAGCGTTTTTTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5441:3116..3679-

>mRNA_P-wetherbeei_contig5441.2.1 ID=mRNA_P-wetherbeei_contig5441.2.1|Name=mRNA_P-wetherbeei_contig5441.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig5441:3116..3679- (Phaeothamnion wetherbeei SAG_119_79)
GGCGTCGCATCACTGGCAGCAGTGGCGTTGGGTGCCAGTTCCGTCCTCGC
CACCGATGTCTACACCGTCCCGCTCGCTCTCATTGATCGCGCTGCCAAGT
TGCAGCAGGAGCAACAGCTGGCTTTATCTGCTGTAGTGACATTCAATGAT
GATGTGCTGCGGACCTGCATCTTTGACGTCTGCGGCCCGGAGCCGCTGCC
GCCGGCGGGTGTAGTTGTCATTTCGGACATGTTTTACAACCACACGGTTG
CGTGGCACGTCGGAAGGCGCGCGGTGGAGGCGTGGGACCGTGGCAGCACT
ACGGTGGTCTCTGACCCTGGCAGATCGGGCCGTACAGCGTTTTTTGCC
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