mRNA_P-wetherbeei_contig54360.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54360.1.1
Unique NamemRNA_P-wetherbeei_contig54360.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54360.1.1 vs. uniprot
Match: A0A1I2A4I2_9BACI (Flagellar motor switch protein FliN/FliY n=1 Tax=Alteribacillus iranensis TaxID=930128 RepID=A0A1I2A4I2_9BACI)

HSP 1 Score: 57.4 bits (137), Expect = 1.400e-7
Identity = 28/76 (36.84%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   22 LSFPIGLHTGEEGEIVLGFSTQQAGILIDLLVGGDGNNPSEDLVKQHQNVLREAVAQMVGGLGDILSAVRGKPVKV 249
            +S  +    G EG  +L   T+ A I+ DL++GGDG+NPS+DL + H + ++EA+ QM+G     +S V  K + +
Sbjct:  106 ISVNVQYTEGVEGTNLLAIQTRDAAIIADLMLGGDGSNPSDDLGELHLSAVQEAMNQMMGSASTSMSTVFNKRIDI 181          
BLAST of mRNA_P-wetherbeei_contig54360.1.1 vs. uniprot
Match: UPI000595D2B1 (flagellar motor switch phosphatase FliY n=1 Tax=Oceanobacillus jeddahense TaxID=1462527 RepID=UPI000595D2B1)

HSP 1 Score: 57.0 bits (136), Expect = 1.900e-7
Identity = 29/92 (31.52%), Postives = 49/92 (53.26%), Query Frame = 1
Query:    1 GEKQWTGLSFPIGLHTGEEGEIVLGFSTQQAGILIDLLVGGDGNNPSEDLVKQHQNVLREAVAQMVGGLGDILSAVRGKPVKVQMGEPLSGL 276
            GE  +  +S  +    G  G  V    T+ A ++ D+++GGDG NP E+L + H + ++EA+ QM+G     +S V  K + +   E + GL
Sbjct:   85 GEVTFRPVSVQVNYIEGFSGNNVFFIKTEDAAVIADIMLGGDGTNPDEELNEMHLSAVQEAMNQMMGAAATSMSTVFNKKIDISPPEIIHGL 176          
BLAST of mRNA_P-wetherbeei_contig54360.1.1 vs. uniprot
Match: UPI00034D16A7 (flagellar motor switch phosphatase FliY n=1 Tax=Alkalihalobacillus ligniniphilus TaxID=1134413 RepID=UPI00034D16A7)

HSP 1 Score: 57.0 bits (136), Expect = 1.920e-7
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   49 GEEGEIVLGFSTQQAGILIDLLVGGDGNNPSEDLVKQHQNVLREAVAQMVGGLGDILSAVRGKPVKV 249
            G EG  +L   T+ A I+ DL++GGDG NPSED+ + H + ++EA+ QM+G     +S V  K V +
Sbjct:  108 GFEGMNLLVIKTKDAAIIADLMLGGDGTNPSEDMSEMHVSAVQEAMNQMMGSASTSMSTVFNKKVDI 174          
BLAST of mRNA_P-wetherbeei_contig54360.1.1 vs. uniprot
Match: A0A2P8HYA5_9BACI (Flagellar motor switch protein FliN/FliY n=1 Tax=Salsuginibacillus halophilus TaxID=517424 RepID=A0A2P8HYA5_9BACI)

HSP 1 Score: 57.0 bits (136), Expect = 1.930e-7
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   49 GEEGEIVLGFSTQQAGILIDLLVGGDGNNPSEDLVKQHQNVLREAVAQMVGGLGDILSAVRGKPVKV 249
            G EG  VL    + A I+ DL++GGDG NP+EDL + H + + EA+ QM+G     +S V  K V +
Sbjct:  127 GFEGSNVLVIQKRDAAIIADLMLGGDGTNPAEDLTEMHTSAVEEAMNQMMGSASTSMSTVFNKKVDI 193          
BLAST of mRNA_P-wetherbeei_contig54360.1.1 vs. uniprot
Match: UPI00131BF05B (flagellar motor switch phosphatase FliY n=1 Tax=Alteribacillus sp. YIM 98480 TaxID=2606599 RepID=UPI00131BF05B)

HSP 1 Score: 56.2 bits (134), Expect = 3.580e-7
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   49 GEEGEIVLGFSTQQAGILIDLLVGGDGNNPSEDLVKQHQNVLREAVAQMVGGLGDILSAVRGKPVKV 249
            G EG  +L  +T  A I+ DL++GGDG NPSEDL   H + ++EA+ QM+G     +S +  K V +
Sbjct:  120 GFEGTNLLVINTLDAAIIADLMLGGDGTNPSEDLTDMHISAVQEAMNQMMGSASTSMSTIFNKRVDI 186          
BLAST of mRNA_P-wetherbeei_contig54360.1.1 vs. uniprot
Match: UPI0007831DF2 (flagellar motor switch phosphatase FliY n=1 Tax=Massilibacterium senegalense TaxID=1632858 RepID=UPI0007831DF2)

HSP 1 Score: 55.5 bits (132), Expect = 6.600e-7
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   22 LSFPIGLHTGEEGEIVLGFSTQQAGILIDLLVGGDGNNPSEDLVKQHQNVLREAVAQMVGGLGDILSAVRGKPVKV 249
            +S  +    G EGE +L   T+ A I+ DL++GGDG NP E+L   H + ++EA+ QM+G     +S +  K V +
Sbjct:  100 VSVQVEYTEGFEGENLLVIRTEDAQIIADLMLGGDGTNPIEELTDMHLSAVQEAMNQMMGSAATSMSTIFNKRVDI 175          
BLAST of mRNA_P-wetherbeei_contig54360.1.1 vs. uniprot
Match: C9LSP8_SELS3 (Flagellar motor switch protein FliN n=3 Tax=Selenomonas TaxID=970 RepID=C9LSP8_SELS3)

HSP 1 Score: 55.1 bits (131), Expect = 9.080e-7
Identity = 26/76 (34.21%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   22 LSFPIGLHTGEEGEIVLGFSTQQAGILIDLLVGGDGNNPSEDLVKQHQNVLREAVAQMVGGLGDILSAVRGKPVKV 249
            L   +G   G +G  VL    Q A I+ DL++GGDG NP+++L + H + + E++ QM+G +   LS +  K + +
Sbjct:  105 LIVEVGYTVGIDGNNVLAIQAQDASIIADLMMGGDGTNPTQELNEIHMSAVGESMNQMMGSVATSLSTMFNKKIDI 180          
BLAST of mRNA_P-wetherbeei_contig54360.1.1 vs. uniprot
Match: A0A1I5MDY8_9BACI (Flagellar motor switch protein FliN/FliY n=1 Tax=Salibacterium halotolerans TaxID=1884432 RepID=A0A1I5MDY8_9BACI)

HSP 1 Score: 54.3 bits (129), Expect = 1.700e-6
Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   49 GEEGEIVLGFSTQQAGILIDLLVGGDGNNPSEDLVKQHQNVLREAVAQMVGGLGDILSAVRGKPVKV 249
            G EG  +L   T  A I+ DL++GGDG NP+ED+ + H + ++EA+ QM+G     +S +  K V +
Sbjct:  113 GFEGTNLLVIKTTDAAIIADLMLGGDGTNPAEDMEEMHISAVQEAMNQMMGSASTSMSTIFNKRVDI 179          
BLAST of mRNA_P-wetherbeei_contig54360.1.1 vs. uniprot
Match: UPI000B44CA92 (flagellar motor switch phosphatase FliY n=1 Tax=Alkalihalobacillus urbisdiaboli TaxID=1960589 RepID=UPI000B44CA92)

HSP 1 Score: 54.3 bits (129), Expect = 1.700e-6
Identity = 27/67 (40.30%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   49 GEEGEIVLGFSTQQAGILIDLLVGGDGNNPSEDLVKQHQNVLREAVAQMVGGLGDILSAVRGKPVKV 249
            G EG  +L   T  A I+ DL++GGDG NPS DL + H + ++EA+ QM+G     +S +  K V +
Sbjct:  110 GFEGMNLLVIKTTDAAIIADLMLGGDGTNPSNDLSEMHISAVQEAMNQMMGSASTSMSTIFNKKVDI 176          
BLAST of mRNA_P-wetherbeei_contig54360.1.1 vs. uniprot
Match: UPI001FD50B0F (flagellar motor switch phosphatase FliY n=1 Tax=Halobacillus sp. SSBR10-3 TaxID=2932257 RepID=UPI001FD50B0F)

HSP 1 Score: 53.9 bits (128), Expect = 2.310e-6
Identity = 26/67 (38.81%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   49 GEEGEIVLGFSTQQAGILIDLLVGGDGNNPSEDLVKQHQNVLREAVAQMVGGLGDILSAVRGKPVKV 249
            G  GE VL   ++ A I+ DL++GGDGN+P+EDL   H + ++E++ QM+G     +S +  K V +
Sbjct:   98 GFSGENVLVIKSKDAAIIADLMLGGDGNSPAEDLQDIHLSAVQESMNQMMGSAATSMSTIFNKKVDI 164          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54360.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I2A4I2_9BACI1.400e-736.84Flagellar motor switch protein FliN/FliY n=1 Tax=A... [more]
UPI000595D2B11.900e-731.52flagellar motor switch phosphatase FliY n=1 Tax=Oc... [more]
UPI00034D16A71.920e-741.79flagellar motor switch phosphatase FliY n=1 Tax=Al... [more]
A0A2P8HYA5_9BACI1.930e-741.79Flagellar motor switch protein FliN/FliY n=1 Tax=S... [more]
UPI00131BF05B3.580e-741.79flagellar motor switch phosphatase FliY n=1 Tax=Al... [more]
UPI0007831DF26.600e-736.84flagellar motor switch phosphatase FliY n=1 Tax=Ma... [more]
C9LSP8_SELS39.080e-734.21Flagellar motor switch protein FliN n=3 Tax=Seleno... [more]
A0A1I5MDY8_9BACI1.700e-638.81Flagellar motor switch protein FliN/FliY n=1 Tax=S... [more]
UPI000B44CA921.700e-640.30flagellar motor switch phosphatase FliY n=1 Tax=Al... [more]
UPI001FD50B0F2.310e-638.81flagellar motor switch phosphatase FliY n=1 Tax=Ha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54360contigP-wetherbeei_contig54360:28..303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1134413.ANNK01000079_gene3350
Preferred namefliY
PFAMsCheC,FliMN_C
Model size276
Max annot lvl91061|Bacilli
KEGG koko:K02417
KEGG TC3.A.6.2,3.A.6.3
KEGG Pathwayko02030,ko02040,map02030,map02040
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004721,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0008150,GO:0008152,GO:0009605,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0032879,GO:0036211,GO:0040011,GO:0040012,GO:0042221,GO:0042330,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050789,GO:0050794,GO:0050896,GO:0051270,GO:0065007,GO:0071704,GO:0140096,GO:1901564,GO:1902021,GO:2000145
Exons1
Evalue3.14e-08
EggNOG OGsCOG1776@1|root,COG1886@1|root,COG1776@2|Bacteria,COG1886@2|Bacteria,1TPT8@1239|Firmicutes,4HC56@91061|Bacilli,1ZB7S@1386|Bacillus
DescriptionFliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
Cds size276
COG categoryN
BRITEko00000,ko00001,ko02035,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186812.3057964-CDS-P-wetherbeei_contig54360:27..3031683186812.3057964-CDS-P-wetherbeei_contig54360:27..303Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54360 28..303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54360.1.1prot_P-wetherbeei_contig54360.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54360 28..303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54360.1.1

>prot_P-wetherbeei_contig54360.1.1 ID=prot_P-wetherbeei_contig54360.1.1|Name=mRNA_P-wetherbeei_contig54360.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
GEKQWTGLSFPIGLHTGEEGEIVLGFSTQQAGILIDLLVGGDGNNPSEDL
VKQHQNVLREAVAQMVGGLGDILSAVRGKPVKVQMGEPLSGL
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mRNA from alignment at P-wetherbeei_contig54360:28..303+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54360.1.1 ID=mRNA_P-wetherbeei_contig54360.1.1|Name=mRNA_P-wetherbeei_contig54360.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig54360:28..303+ (Phaeothamnion wetherbeei SAG_119_79)
GGAGAAAAACAATGGACCGGCCTGAGCTTTCCTATCGGGCTTCACACGGG GGAGGAGGGAGAGATCGTGTTGGGTTTCAGTACCCAACAAGCCGGAATCC TCATCGATTTACTTGTAGGGGGCGACGGCAATAACCCCTCAGAGGACCTG GTGAAACAGCACCAAAACGTCTTGCGAGAAGCAGTGGCGCAGATGGTAGG TGGGCTTGGCGACATACTCTCTGCCGTTCGAGGCAAGCCGGTAAAGGTTC AGATGGGAGAACCACTGAGCGGGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54360:28..303+

>mRNA_P-wetherbeei_contig54360.1.1 ID=mRNA_P-wetherbeei_contig54360.1.1|Name=mRNA_P-wetherbeei_contig54360.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig54360:28..303+ (Phaeothamnion wetherbeei SAG_119_79)
GGAGAAAAACAATGGACCGGCCTGAGCTTTCCTATCGGGCTTCACACGGG
GGAGGAGGGAGAGATCGTGTTGGGTTTCAGTACCCAACAAGCCGGAATCC
TCATCGATTTACTTGTAGGGGGCGACGGCAATAACCCCTCAGAGGACCTG
GTGAAACAGCACCAAAACGTCTTGCGAGAAGCAGTGGCGCAGATGGTAGG
TGGGCTTGGCGACATACTCTCTGCCGTTCGAGGCAAGCCGGTAAAGGTTC
AGATGGGAGAACCACTGAGCGGGCTG
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