mRNA_P-wetherbeei_contig54357.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54357.1.1
Unique NamemRNA_P-wetherbeei_contig54357.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54357.1.1 vs. uniprot
Match: UPI001F5D00C4 (DUF1214 domain-containing protein n=1 Tax=Phenylobacterium aquaticum TaxID=1763816 RepID=UPI001F5D00C4)

HSP 1 Score: 264 bits (675), Expect = 8.170e-84
Identity = 128/176 (72.73%), Postives = 139/176 (78.98%), Query Frame = 1
Query:    1 FVGPGWQGDLPQGLAVARMPTNLTSIAVRIAVHGEDDLAAVRRYQGAMSLTALADWKDGPSGTPPPAPGVRERARYDGDFAYFRLVADLMAENPPPAKHVGMLAMMRRIGLVPGKPFDPAKLDPATRAGVLRAEEQGPAIIDLIRRTRGTPTATGWTANRAALANDFDYPTRAGNA 528
            FVGP W+G LP G+   R  TNL SIAVRIAVHGE DLA VRRYQ AMSLTALADW   PS TPP  P  + RA Y GDFAYFR +ADLM +NPPP KH  M+ MMRRIGLVPG+PF+P  LDPATRAGVLRAE +GP +I+LIRRTRGTPT TGWTANRA   NDFDYPTRAGNA
Sbjct:  176 FVGPTWKGKLPAGVKELRATTNLLSIAVRIAVHGEADLANVRRYQSAMSLTALADWHGRPSATPPKPPPPKTRAAYSGDFAYFRRIADLMTDNPPPPKHAAMVTMMRRIGLVPGQPFNPDALDPATRAGVLRAEREGPVVINLIRRTRGTPTPTGWTANRAGANNDFDYPTRAGNA 351          
BLAST of mRNA_P-wetherbeei_contig54357.1.1 vs. uniprot
Match: A0A350ZS29_9PROT (DUF1254 domain-containing protein n=1 Tax=Hyphomonas sp. TaxID=87 RepID=A0A350ZS29_9PROT)

HSP 1 Score: 243 bits (621), Expect = 7.150e-76
Identity = 117/176 (66.48%), Postives = 135/176 (76.70%), Query Frame = 1
Query:    1 FVGPGWQGDLPQGLAVARMPTNLTSIAVRIAVHGEDDLAAVRRYQGAMSLTALADWKDGPSGTPPPAPGVRERARYDGDFAYFRLVADLMAENPPPAKHVGMLAMMRRIGLVPGKPFDPAKLDPATRAGVLRAEEQGPAIIDLIRRTRGTPTATGWTANRAALANDFDYPTRAGNA 528
            FVGP W G LP+G+ +AR+PTNL SIAVRIAV  E DL  VRRYQ  MSLTAL+DW+  PS + P  P  + R  Y+GDFAYFR VADLM +NPPP  HV M  MMRRIG+ PG+PF P  LD AT+AG+LRAE +GP +I+LIRRTRGT T TGWTANRA+  NDFDYPTRAGNA
Sbjct:  162 FVGPHWTGKLPRGVKIARIPTNLVSIAVRIAVRDEADLGTVRRYQEQMSLTALSDWRGRPSTSRPAPPPAKARTAYEGDFAYFRRVADLMIDNPPPRSHVAMYEMMRRIGIKPGEPFRPESLDAATQAGILRAEREGPMLINLIRRTRGTATPTGWTANRASKDNDFDYPTRAGNA 337          
BLAST of mRNA_P-wetherbeei_contig54357.1.1 vs. uniprot
Match: UPI001469A464 (DUF1214 domain-containing protein n=1 Tax=Oceanicaulis alexandrii TaxID=153233 RepID=UPI001469A464)

HSP 1 Score: 166 bits (421), Expect = 3.880e-46
Identity = 85/174 (48.85%), Postives = 110/174 (63.22%), Query Frame = 1
Query:    1 FVGPGWQGDLPQGLAVARMPTNLTSIAVRIAVH-GEDDLAAVRRYQGAMSLTALADWKDGPSGTPPPAPGVRERARYDGDFAYFRLVADLMAENPPPAKHVGMLAMMRRIGLVPGKPFDPAKLDPATRAGVLRAEEQGPAIIDLIRRTRGTPTATGWTANRAALANDFDYPTRA 519
            FVGP W+G+LP G+    + T   ++A+R+AV   E DLA VR YQ  MSLT L+ W +GP+   P  P   ER  ++G FA+F  +A L+AENPPP +H  M A + R+GL PG+ FDP  LDP TRAG+LRA E GPA+++ +RR RG    TGW   R A    FDY  RA
Sbjct:  163 FVGPDWEGELPDGVQRVDIDTPSGALAIRLAVQRNETDLATVRGYQNQMSLTPLSAWNNGPTEVEPAIPAPVERETFEGPFAHFHQMAVLLAENPPPPQHAAMNATLWRLGLEPGQGFDPDALDPDTRAGILRAIEDGPAVMEYLRRNRGQRFPTGWDTARYADDIVFDYAARA 336          
BLAST of mRNA_P-wetherbeei_contig54357.1.1 vs. uniprot
Match: A0A1H7FGV3_9GAMM (DNA sulfur modification protein DndE n=1 Tax=Atopomonas hussainii TaxID=1429083 RepID=A0A1H7FGV3_9GAMM)

HSP 1 Score: 110 bits (276), Expect = 2.740e-25
Identity = 61/158 (38.61%), Postives = 86/158 (54.43%), Query Frame = 1
Query:    1 FVGPGWQGDLPQGLAVARMPTNLTSIAVRIAVHGED--DLAAVRRYQGAMSLTALADWKDGPSGTPPPAPGVRERARYDGDFAYFRLVADLMAENPPPAKHVGMLAMMRRIGLVPGKPFDPAKLDPATRAGVLRAEEQGPAIIDLIRRTRGTPTATGW 468
            FVGP WQG +P+G+ + R+PT+  ++A+R  V  ED  DL  V   Q  +  T+L+ W   P G     P    R  Y+GD A+F  + DL+ ENPP  +    + M + IG+  GKPFD + L PAT AG+ RA      ++    + RGTP  T W
Sbjct:  176 FVGPDWQGVVPEGVELRRLPTHSGALALRYGVSKEDPQDLPRVLALQQQVKTTSLSHWGQ-PDGLGKVTPVAMTRKTYEGDLAFFERMVDLLNENPPRQEQRAAVGMFQSIGIELGKPFDASSLHPATIAGLKRALHDSQDLMTWKVKYRGTPYPTRW 332          
BLAST of mRNA_P-wetherbeei_contig54357.1.1 vs. uniprot
Match: UPI001BAC2AE3 (DUF1214 domain-containing protein n=1 Tax=Kistimonas asteriae TaxID=517724 RepID=UPI001BAC2AE3)

HSP 1 Score: 108 bits (270), Expect = 1.870e-24
Identity = 65/159 (40.88%), Postives = 89/159 (55.97%), Query Frame = 1
Query:    1 FVGPGWQGDLPQGLAVARMPTNLTSIAVR--IAVHGEDDLAAVRRYQGAMSLTALADW-KDGPSGTPPPAPGVRERARYDGDFAYFRLVADLMAENPPPAKHVGMLAMMRRIGLVPGKPFDPAKLDPATRAGVLRAEEQGPAIIDLIRRTRGTPTATGW 468
            FVGP WQG +P+GL++ RMPTN   IA+R  +A    +++A V   Q  +  T+L++W K+   G   P     ER  YDGD A+F  +ADL+ ENPP       + M + IG+  GKPF    LDPA + G+ RA      I+    + RGTP AT W
Sbjct:  176 FVGPDWQGGVPEGLSLRRMPTNSAVIALRYGLAKDSPEEIANVMDIQKQVFTTSLSNWGKEDGFGKVNPV--QMERKAYDGDLAFFEKMADLLNENPPREHQRDAVGMFQSIGIELGKPFAGDALDPAIQRGLKRAMNDVDNIMVWKVKYRGTPYATRW 332          
BLAST of mRNA_P-wetherbeei_contig54357.1.1 vs. uniprot
Match: A0A1Y6D271_9GAMM (Uncharacterized conserved protein n=2 Tax=Methylomagnum ishizawai TaxID=1760988 RepID=A0A1Y6D271_9GAMM)

HSP 1 Score: 104 bits (259), Expect = 5.980e-23
Identity = 72/184 (39.13%), Postives = 90/184 (48.91%), Query Frame = 1
Query:    1 FVGPGWQGDLPQGLAVARMPTNLTSIAVRIAVHGEDDLAAVRRYQGAMSLTALADWKDGPSGTPPPA---PGVR------ERARYDGDFAYFRLVADLMAENPPPAKHVGMLAMMRRIGLVPGKPFDPAKLDPATRAGVLRAEEQGPAIIDLIRRTRGTPTATGWTANRAALANDF--DYPTRA 519
              GPGW G+LP  +   + PTNL  I  R   +G  D AAV   Q    LT L+ +  G   TPPPA   P V       E     G  A+F  +  LM +NPPP     +LA + +IG+VPG+PFDPAKLDPA   G+ +A       +    +  G P   GW      LA DF  DY TRA
Sbjct:  163 ITGPGWTGNLPADVKPLKSPTNLVWIIGRTQTNGPKDYAAVHAVQRQYQLTPLSAF--GKPYTPPPAAVDPTVDMRLAPVEAVAKMGSAAFFNTLTALMQDNPPPPADAPVLAKLAKIGIVPGQPFDPAKLDPALAKGLEQALPAALEKLTAASKQAGAPV-NGWRIPSMQLA-DFGTDYGTRA 342          
BLAST of mRNA_P-wetherbeei_contig54357.1.1 vs. uniprot
Match: UPI001C464A5F (DUF1214 domain-containing protein n=1 Tax=Shewanella sp. NIFS-20-20 TaxID=2853806 RepID=UPI001C464A5F)

HSP 1 Score: 96.7 bits (239), Expect = 3.770e-20
Identity = 65/185 (35.14%), Postives = 91/185 (49.19%), Query Frame = 1
Query:    1 FVGPGWQGDLPQGLAVARMPTNLTSIAVRIAVHG--EDDLAAVRRYQ---GAMSLTALADWKDGPSGTPPPAPGVRERARYDGD-FAYFRLVADLMAENPPPAKHVGMLAMMRRIGLVPGKPFDPAKLDPATRAGVLRAEEQGPAIIDLIR---RTRGTPTATGWTANRAALANDFDYPTRAGNA 528
             +GP WQG LP G+   RMP N   +A+RIA +   E ++A VR  Q    AM L+     K   +  PP A  + E     G   A++R  + L+ ENPP   +  +L    +IGL    PFDP+KLD AT+ G+ RA     A ID+++   + RGT +   W  +        DY  RA  A
Sbjct:  188 LIGPDWQGQLPDGVTAMRMPNNSAIVALRIASYSNAEAEVAEVRELQQLFDAMPLSQFGMSKAQRAALPPVALNLAETQMKQGQALAFYRYFSQLLMENPPVGDNRAILNTFNQIGLSDTTPFDPSKLDEATKRGLARAVN---ASIDIVKWKVKFRGTQSQNKWNVDFVGGDYGTDYLARAEGA 369          
BLAST of mRNA_P-wetherbeei_contig54357.1.1 vs. uniprot
Match: UPI0009E65D4B (DUF1254 domain-containing protein n=1 Tax=Methyloterricola oryzae TaxID=1495050 RepID=UPI0009E65D4B)

HSP 1 Score: 95.9 bits (237), Expect = 6.490e-20
Identity = 69/186 (37.10%), Postives = 91/186 (48.92%), Query Frame = 1
Query:    7 GPGWQGDLPQGLAVARMPTNLTSIAVRIAVHGEDDLAAVRRYQGAMSLTALADWKDGPSGTPPPA---PGVR------ERARYDGDFAYFRLVADLMAENPPPAKHVGMLAMMRRIGLVPGKPFDPAKLDPATRAGVLRAEEQGPAIIDLIRRTR---GTPTATGW---TANRAALANDFDYPTRA 519
            GPGW G LP G+   + PTN+  I  R   +G  D AAV   Q    LT L+ +  G   TPPPA   P V       +        A+F  +A LM +NPPP +   +LA + +IG+VPG+PFDP KL+P    G+   E+  P  +D +       G P   GW   + N AA   D  Y TRA
Sbjct:  167 GPGWTGTLPAGITQLKSPTNMVWIIGRTQTNGPKDYAAVHAIQKRYRLTPLSAF--GKPYTPPPAAVDPTVDMKLAPVQAVATMSSAAFFNTLAVLMKDNPPPREDAPVLAKLAKIGIVPGQPFDPTKLEPPVAQGL---EKALPTALDKLTDAAKHVGAPV-NGWRVPSLNMAAYGTD--YTTRA 344          
BLAST of mRNA_P-wetherbeei_contig54357.1.1 vs. uniprot
Match: A0A6P0ZLJ1_9CYAN (DUF1254 domain-containing protein (Fragment) n=1 Tax=Sphaerospermopsis sp. SIO1G2 TaxID=2607815 RepID=A0A6P0ZLJ1_9CYAN)

HSP 1 Score: 95.1 bits (235), Expect = 1.030e-19
Identity = 67/206 (32.52%), Postives = 92/206 (44.66%), Query Frame = 1
Query:    1 FVGPGWQG---DLPQGLAVARMPTNLTSIAVRIAVHGEDDLAA------------VRRYQGAMSLTALADWKDGPSGTPPPAP---------------GVRERARYDGDFAYFRLVADLMAENPPPAKHVGMLAMMRRIGLVPGKPFDPAKLDPATRAGVLRAEEQGPAIIDLIRRTRGTPTATGWTANRAALANDFDYPTRAGNA 528
            FVGP W G   DLP    +  +  N    A+RI++  +D                V   Q   +LT+L++WK G  G    A                 +++R  YDG FA+++L+ADLM ENPP A H   +   + IGL  G+ FDP  L   T+ GV +A    P I++   + RGT   T W        N FDY  RA  A
Sbjct:   85 FVGPDWTGSRQDLPARATIHHLDYNSNIFALRISIDPDDKYGTPTQAAGTELAHIVNDLQPQFNLTSLSNWKQGNCGNVAIADFSRTNRYCGRAAVPESIKQRPDYDGAFAFYQLMADLMIENPPVADHDAAVVPFKYIGLNVGEKFDPKALLAPTQLGVAKAGLASPMIMNWKVKYRGTNYETRWNNLHPGTYN-FDYLDRAAGA 289          
BLAST of mRNA_P-wetherbeei_contig54357.1.1 vs. uniprot
Match: A0A239D723_9SPHN (Uncharacterized conserved protein n=1 Tax=Sphingopyxis indica TaxID=436663 RepID=A0A239D723_9SPHN)

HSP 1 Score: 94.7 bits (234), Expect = 1.530e-19
Identity = 67/181 (37.02%), Postives = 87/181 (48.07%), Query Frame = 1
Query:    1 FVGPGWQGDLPQGLAVARMPTNLTSIAVRIAVHGEDDLAAVRRYQGAMSLTALADW-----KDGPSGTPPPA-----PGVRERARYDGDFAYFRLVADLMAENPPPAKHVGMLAMMRRIGLVPGKPFDPAKLDPATRAGVLRAEEQG-PAIIDLIRRTRGTPTATGWTANRAALA---NDF 501
             VGP WQG+LP G+ + R PT+   I  RI  +G  D   V   Q   +   L+ W         S  P P+     P V + AR     A++ L A+ +  NPP A    +L  M R+GLVPGK FD A +DPA + G+ RA       I+D   RTR   TA GW A   AL    ND+
Sbjct:  145 LVGPHWQGELPAGMRMVRSPTDNGWIIGRIQTNGAPDYDHVHGLQAGYAAAPLSSWGQQQPASKASMEPDPSIDMATPPVEQLARMS-PAAFYSLFAETLKRNPPHATDYAILLRMERVGLVPGKSFDLAAVDPAVQRGLSRAAADAYRRIVD--NRTRVRLTANGWVALGNALGVYGNDY 322          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54357.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F5D00C48.170e-8472.73DUF1214 domain-containing protein n=1 Tax=Phenylob... [more]
A0A350ZS29_9PROT7.150e-7666.48DUF1254 domain-containing protein n=1 Tax=Hyphomon... [more]
UPI001469A4643.880e-4648.85DUF1214 domain-containing protein n=1 Tax=Oceanica... [more]
A0A1H7FGV3_9GAMM2.740e-2538.61DNA sulfur modification protein DndE n=1 Tax=Atopo... [more]
UPI001BAC2AE31.870e-2440.88DUF1214 domain-containing protein n=1 Tax=Kistimon... [more]
A0A1Y6D271_9GAMM5.980e-2339.13Uncharacterized conserved protein n=2 Tax=Methylom... [more]
UPI001C464A5F3.770e-2035.14DUF1214 domain-containing protein n=1 Tax=Shewanel... [more]
UPI0009E65D4B6.490e-2037.10DUF1254 domain-containing protein n=1 Tax=Methylot... [more]
A0A6P0ZLJ1_9CYAN1.030e-1932.52DUF1254 domain-containing protein (Fragment) n=1 T... [more]
A0A239D723_9SPHN1.530e-1937.02Uncharacterized conserved protein n=1 Tax=Sphingop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54357contigP-wetherbeei_contig54357:2..529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1122613.ATUP01000001_gene59
PFAMsDUF1214,DUF1254
Model size528
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.47e-47
EggNOG OGsCOG5361@1|root,COG5361@2|Bacteria,1MWTW@1224|Proteobacteria,2TUR1@28211|Alphaproteobacteria,440RM@69657|Hyphomonadaceae
DescriptionProtein of unknown function (DUF1254)
Cds size528
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186812.1938996-CDS-P-wetherbeei_contig54357:1..5291683186812.1938996-CDS-P-wetherbeei_contig54357:1..529Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54357 2..529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54357.1.1prot_P-wetherbeei_contig54357.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54357 2..529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54357.1.1

>prot_P-wetherbeei_contig54357.1.1 ID=prot_P-wetherbeei_contig54357.1.1|Name=mRNA_P-wetherbeei_contig54357.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp
FVGPGWQGDLPQGLAVARMPTNLTSIAVRIAVHGEDDLAAVRRYQGAMSL
TALADWKDGPSGTPPPAPGVRERARYDGDFAYFRLVADLMAENPPPAKHV
GMLAMMRRIGLVPGKPFDPAKLDPATRAGVLRAEEQGPAIIDLIRRTRGT
PTATGWTANRAALANDFDYPTRAGNA
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mRNA from alignment at P-wetherbeei_contig54357:2..529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54357.1.1 ID=mRNA_P-wetherbeei_contig54357.1.1|Name=mRNA_P-wetherbeei_contig54357.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig54357:2..529+ (Phaeothamnion wetherbeei SAG_119_79)
TTTGTCGGTCCGGGCTGGCAGGGCGACCTGCCACAGGGTCTGGCCGTCGC CCGGATGCCGACAAATCTCACCTCGATCGCCGTCCGCATCGCGGTCCATG GCGAAGACGACCTGGCCGCCGTTCGCCGTTACCAGGGCGCGATGTCCCTG ACCGCGCTCGCGGACTGGAAGGACGGCCCGTCGGGGACGCCGCCGCCCGC GCCGGGCGTCCGGGAGCGCGCGCGTTATGACGGGGACTTCGCCTATTTCC GGCTGGTCGCCGACCTGATGGCCGAGAATCCGCCGCCCGCCAAACATGTG GGCATGCTGGCCATGATGCGTCGCATCGGTCTGGTTCCCGGCAAGCCGTT CGACCCCGCCAAACTCGATCCGGCCACAAGGGCCGGGGTCCTGCGCGCCG AAGAGCAGGGGCCGGCGATCATCGACCTGATCCGGCGGACGCGCGGGACG CCGACCGCCACCGGGTGGACGGCGAACCGGGCCGCGCTGGCCAACGACTT CGACTACCCGACGCGCGCCGGCAACGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54357:2..529+

>mRNA_P-wetherbeei_contig54357.1.1 ID=mRNA_P-wetherbeei_contig54357.1.1|Name=mRNA_P-wetherbeei_contig54357.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig54357:2..529+ (Phaeothamnion wetherbeei SAG_119_79)
TTTGTCGGTCCGGGCTGGCAGGGCGACCTGCCACAGGGTCTGGCCGTCGC
CCGGATGCCGACAAATCTCACCTCGATCGCCGTCCGCATCGCGGTCCATG
GCGAAGACGACCTGGCCGCCGTTCGCCGTTACCAGGGCGCGATGTCCCTG
ACCGCGCTCGCGGACTGGAAGGACGGCCCGTCGGGGACGCCGCCGCCCGC
GCCGGGCGTCCGGGAGCGCGCGCGTTATGACGGGGACTTCGCCTATTTCC
GGCTGGTCGCCGACCTGATGGCCGAGAATCCGCCGCCCGCCAAACATGTG
GGCATGCTGGCCATGATGCGTCGCATCGGTCTGGTTCCCGGCAAGCCGTT
CGACCCCGCCAAACTCGATCCGGCCACAAGGGCCGGGGTCCTGCGCGCCG
AAGAGCAGGGGCCGGCGATCATCGACCTGATCCGGCGGACGCGCGGGACG
CCGACCGCCACCGGGTGGACGGCGAACCGGGCCGCGCTGGCCAACGACTT
CGACTACCCGACGCGCGCCGGCAACGCC
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