mRNA_P-wetherbeei_contig542.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig542.3.1
Unique NamemRNA_P-wetherbeei_contig542.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig542.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig542contigP-wetherbeei_contig542:5745..6834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size544
Hectar predicted targeting categoryother localisation
Exons2
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186810.1520932-CDS-P-wetherbeei_contig542:5744..61311683186810.1520932-CDS-P-wetherbeei_contig542:5744..6131Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig542 5745..6131 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186810.1607847-UTR-P-wetherbeei_contig542:6131..62351683186810.1607847-UTR-P-wetherbeei_contig542:6131..6235Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig542 6132..6235 -
1683186810.1717207-UTR-P-wetherbeei_contig542:6782..68341683186810.1717207-UTR-P-wetherbeei_contig542:6782..6834Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig542 6783..6834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig542.3.1prot_P-wetherbeei_contig542.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig542 5745..6131 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig542.3.1

>prot_P-wetherbeei_contig542.3.1 ID=prot_P-wetherbeei_contig542.3.1|Name=mRNA_P-wetherbeei_contig542.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
MSAELVEPAGTAPPTEDACEADAAILRRLRRSSRGSIGRRPSDCDGDGAS
EAAAAPSVSVAAPAAAAAAAAAAASAAAAVANRPVALTKRERQAAAAAAA
AAAAVKAAEAAPAAVAADIPSPNTTAVNT
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mRNA from alignment at P-wetherbeei_contig542:5745..6834-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig542.3.1 ID=mRNA_P-wetherbeei_contig542.3.1|Name=mRNA_P-wetherbeei_contig542.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1090bp|location=Sequence derived from alignment at P-wetherbeei_contig542:5745..6834- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGGAAGTGACGGGCGCAGACTGCGGCAGACGGAAGGCATAGCACAC
AGGTGTGTCCACGGTGGGAGTCGGAAGTCCGTCGGTTTTGCTCTCGCTTA
TTCTAAATCCCGGTCAAACGCGCTCACTCCGTGATTCGACGTTGAAGCCA
ACAAGGAGAATGCAACGTTGACGTGAATTGCCTATCTTGCACGCTGCCGC
CCATTGCGCGGTGCTGGCCCGTCTCCTGCCCTTCTGGCTTCGGGTTTTCC
GTCACAATCTGTTTGAAAGGCGCGTGAGGCGAAAGTGACTGAAAGAGAGG
GGGCGATCTGGCGATTCTGCTACGGCGCGAGTAGGCTGTTGGCACTGCGC
GCCGCTCCGTTATGCACCGTGCGAGGCCGCAAGATTCCTTGTGTGTTCCC
TTTTGTCCAGCTCCTTTCGAACCTGTCGATCTTCGGAGCGTTCAAATCGA
AGGCGCTCACGCGACGACCCAGGGAGAAATGAACCGTAGCGACCTTGCGA
TCGAGTGCACACCGTGGGGCAGTCGTATCTTCGTCTTTGCTTTACTTCAG
AAAATGCTCCAACTGCAATCCCACCAATCTTGCTCTTTCCGCCTCCCAGG
AGAAGCTCAGCGGAGCGATAACGGCTGGCTGCGGCGCTCAGGTCAGCTAC
TGACGAACGCGTGGGAGCAATAAACTTCTCGTTTCTAATCTCAGTGCGTG
ACGATGTCGGCCGAGCTTGTGGAGCCAGCTGGTACGGCTCCCCCGACCGA
GGACGCGTGCGAGGCGGACGCCGCCATCCTCCGACGCCTGCGCCGCAGCA
GTCGCGGCTCCATCGGCCGGCGGCCGAGCGACTGCGACGGCGACGGCGCT
TCTGAGGCTGCCGCTGCTCCGTCAGTATCGGTGGCGGCGCCAGCGGCCGC
AGCAGCGGCAGCAGCAGCGGCGGCGTCGGCGGCAGCGGCAGTTGCGAACC
GCCCTGTGGCCCTTACCAAGCGTGAGCGTCAGGCTGCCGCTGCGGCGGCA
GCGGCAGCGGCGGCGGTGAAGGCAGCGGAGGCCGCGCCTGCCGCGGTGGC
CGCGGATATCCCGTCGCCAAACACGACGGCTGTCAACACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig542:5745..6834-

>mRNA_P-wetherbeei_contig542.3.1 ID=mRNA_P-wetherbeei_contig542.3.1|Name=mRNA_P-wetherbeei_contig542.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig542:5745..6834- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGCCGAGCTTGTGGAGCCAGCTGGTACGGCTCCCCCGACCGAGGA
CGCGTGCGAGGCGGACGCCGCCATCCTCCGACGCCTGCGCCGCAGCAGTC
GCGGCTCCATCGGCCGGCGGCCGAGCGACTGCGACGGCGACGGCGCTTCT
GAGGCTGCCGCTGCTCCGTCAGTATCGGTGGCGGCGCCAGCGGCCGCAGC
AGCGGCAGCAGCAGCGGCGGCGTCGGCGGCAGCGGCAGTTGCGAACCGCC
CTGTGGCCCTTACCAAGCGTGAGCGTCAGGCTGCCGCTGCGGCGGCAGCG
GCAGCGGCGGCGGTGAAGGCAGCGGAGGCCGCGCCTGCCGCGGTGGCCGC
GGATATCCCGTCGCCAAACACGACGGCTGTCAACACC
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