mRNA_P-wetherbeei_contig5413.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5413.2.1
Unique NamemRNA_P-wetherbeei_contig5413.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5413.2.1 vs. uniprot
Match: A0A6H5JKS8_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKS8_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.950e-36
Identity = 95/244 (38.93%), Postives = 111/244 (45.49%), Query Frame = 1
Query:  157 VMRVNQLDAGVLDNELHDLLRTQLNRVFSMFQASSVERYKPEVEALLRLLLWRFTVWSRLPTPGMKLQSLRYGD--GRAPQAPFLD------------------------------GALSHGGN----DGSXXXXXXXXXXXXXXXXXXXXXXA-------------TATQRLAFGMLYIGAPWALTRLTRWALACGWDERPDGDWRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLER 741
            VMRVNQLDAGVLD ELH LL+TQL R  S   A ++ER+KPEV+AL  LL++RFTVW   PTPGM LQ LRY    GR    P                                 GAL HGG     DGS                      A             T  QRL  G+L +G  W   RL R  L  GW     G  R   W  L R E  +R  W++NLLLFL++G Y TP++R
Sbjct:   32 VMRVNQLDAGVLDTELHSLLKTQLGRACSGLPAGTLERFKPEVDALFNLLMFRFTVWVHRPTPGMHLQGLRYRSEGGRTAGPPSATASGGSXXXXXXXXXAGDVSSLASGWEGGDGGALGHGGPSNTADGSSVGTRSPEREGGASSTSTFPGLASTAPLPYWGDAAPTRAQRLVHGLLSVGVQWGFARLRRHGLIHGWGGEDAGRARRVAWHVLGRLETLFRLAWMVNLLLFLKSGKYATPVDR 275          
BLAST of mRNA_P-wetherbeei_contig5413.2.1 vs. uniprot
Match: W7TYI4_9STRA (Peroxin-2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYI4_9STRA)

HSP 1 Score: 125 bits (313), Expect = 8.240e-30
Identity = 83/224 (37.05%), Postives = 109/224 (48.66%), Query Frame = 1
Query:  157 VMRVNQLDAGVLDNELHDLLRTQLNRVFS--MFQASSVERYKPEVEALLRLLLWRFTVWSRLPTPGMKLQSLRYGDGRAPQAPFLDGALSHGGNDGSXXXXXXXXXXXXXXXXXXXXXXATATQRLAFGMLYIGAPWALTRLTRWALACGW-DE--------------------------RPDGDWRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLER 741
            VM+VNQ+DA VLD EL DLL+ QL  +F+   F    V++YKPE++ALL  LL+RFT++   PTPGM++Q+LR+ DG A        A S                                +QRL  G L I   W   RL R AL  GW DE                          R  G W+   +RAL RAE+ +R  WL+N L+FLR G+YP+ L+R
Sbjct:   93 VMKVNQVDARVLDTELLDLLQIQLCSMFAPPFFAPGVVDKYKPELKALLDFLLFRFTIFQNEPTPGMRMQNLRFVDGHAIGTSVSSAASS------------------------VDAHAPRVSQRLLLGFLCIAGQWGFARLRRHALVAGWADEVQHPQPLISHTSDAQARGQGERSSGTRGGGQWKRRAYRALTRAESLFRLAWLINFLVFLRVGSYPSLLQR 292          
BLAST of mRNA_P-wetherbeei_contig5413.2.1 vs. uniprot
Match: A0A4D9D9T6_9STRA (Pex2_Pex12 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9T6_9STRA)

HSP 1 Score: 123 bits (308), Expect = 3.340e-29
Identity = 83/229 (36.24%), Postives = 111/229 (48.47%), Query Frame = 1
Query:  157 VMRVNQLDAGVLDNELHDLLRTQLNRVFS--MFQASSVERYKPEVEALLRLLLWRFTVWSRLPTPGMKLQSLRYGDGRAPQAPFLDGALSHGGNDGSXXXXXXXXXXXXXXXXXXXXXXATATQRLAFGMLYIGAPWALTRLTRWALACGW----------------------DERPDGD----------WRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLER 741
            VM+VNQ+DA VLD EL DLL+ QL  +F+   F    V++YKPE++ALL  LL+RFT++   PTPGM++Q+LR+ DG A        A S                                +QRL  G L I   W+  RL R AL  GW                      D+R  G+          W+   +RAL RAE+ +R  WLLN L+FLR G+YP+ L+R
Sbjct:   93 VMKVNQVDARVLDTELLDLLQIQLCSMFAPPFFAPGVVDKYKPELKALLDFLLFRFTIFQNEPTPGMRMQNLRFVDGHAIGTSVSSVASS------------------------VDAHAPRVSQRLLLGFLCIAGQWSFARLRRHALVAGWADEVQHPQSLIPHTSDAQASNGDDRGQGERSSGTQGGGQWKRRAYRALTRAESLFRLAWLLNFLVFLRVGSYPSLLQR 297          
BLAST of mRNA_P-wetherbeei_contig5413.2.1 vs. uniprot
Match: A0A4P9WGU4_9FUNG (Pex12 amino terminal region-domain-containing protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WGU4_9FUNG)

HSP 1 Score: 114 bits (286), Expect = 8.390e-28
Identity = 63/199 (31.66%), Postives = 112/199 (56.28%), Query Frame = 1
Query:  157 VMRVNQLDAGVLDNELHDLLRTQLNRVFSMFQASSVERYKPEVEALLRLLLWRFTVWSRLPTPGMKLQSLRYGD----GRAPQAPFLDGALSHGGNDGSXXXXXXXXXXXXXXXXXXXXXXATATQRLAFGMLYIGAPWALTRLTRWALACGWDERPDGDWRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLER 741
            V+RV+QLDA +LD EL  +L+ Q  ++F++F  +  ER++PE  A+L+ +++ F++++   + G++LQ+LRY +    G   +A  +D  L                               T +Q+LA  +L++   W+  R+ R+A    W E P+ +WR+ +WR L++AE AY+A+ ++N L+FL  G Y +PL+R
Sbjct:    3 VLRVSQLDAELLDQELSTMLKDQFLQIFALFSPTVKERFEPEFTAILQYVMYHFSIYATGASYGLQLQNLRYRNESRHGGKREASTIDAPL-------------------------------TRSQKLAHAILHVFGRWSWLRVNRYATTHEWSEHPENNWRNRIWRYLQKAETAYKAISVVNFLVFLYDGRYRSPLDR 170          
BLAST of mRNA_P-wetherbeei_contig5413.2.1 vs. uniprot
Match: C1E8X2_MICCC (RING-type domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E8X2_MICCC)

HSP 1 Score: 114 bits (284), Expect = 3.770e-26
Identity = 75/195 (38.46%), Postives = 100/195 (51.28%), Query Frame = 1
Query:  157 VMRVNQLDAGVLDNELHDLLRTQLNRVFSMFQASSVERYKPEVEALLRLLLWRFTVWSRLPTPGMKLQSLRYGDGRAPQAPFLDGALSHGGNDGSXXXXXXXXXXXXXXXXXXXXXXATATQRLAFGMLYIGAPWALTRLTRWALACGWDERPDGDWRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLER 741
            V+RV Q+DAG LD+EL  LLR Q NRVF+M    +V R + E+  LL  L++ FTVWS  PTPGM+L +LRY D R P +           + G                        + +QRL +G  ++G  +A ++L R   A  W + P+G WR     A+   EA Y AL L+NLL FL  G Y T  ER
Sbjct:   35 VLRVAQVDAGRLDDELVSLLREQFNRVFAMVFPGAVTRRQSELTLLLDALVFYFTVWSHRPTPGMELMNLRYRDER-PSSSXXXXXXXXXXSTGRTGMEGAKL---------------SVSQRLLYGTAFVGGRFAWSKLRRAIGAGRWADEPEGSWRRVASSAVSALEATYSALALVNLLAFLNRGRYRTLTER 213          
BLAST of mRNA_P-wetherbeei_contig5413.2.1 vs. uniprot
Match: L8HGF4_ACACA (Pex2 / Pex12 amino terminal regioncontaining protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HGF4_ACACA)

HSP 1 Score: 109 bits (272), Expect = 1.380e-24
Identity = 62/195 (31.79%), Postives = 101/195 (51.79%), Query Frame = 1
Query:  157 VMRVNQLDAGVLDNELHDLLRTQLNRVFSMFQASSVERYKPEVEALLRLLLWRFTVWSRLPTPGMKLQSLRYGDGRAPQAPFLDGALSHGGNDGSXXXXXXXXXXXXXXXXXXXXXXATATQRLAFGMLYIGAPWALTRLTRWALACGWDERPDGDWRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLER 741
            V+RVNQLDA +LDNEL  +++T   ++FS+F+ S ++R+ PE++A L  +++R ++++   T G +LQ+L Y D R          +                               +  Q++ +G+L+IG  WA  RL R A    W ER + D    +W+ L   E A++AL LLN + FL  G Y +P++R
Sbjct:   37 VLRVNQLDASLLDNELTSIIKTSFTKIFSLFRPSLIDRFTPELDAFLYFIMYRLSLYATGSTYGQRLQNLTYRDERQDYLQATQRIIP-----------------------------PSTLQKIMWGVLHIGGAWAWARLNRLASDRTWAERDEDDVYKTLWKVLNYLEVAWKALTLLNFVAFLYNGKYMSPVDR 202          
BLAST of mRNA_P-wetherbeei_contig5413.2.1 vs. uniprot
Match: A0A835Z8Z6_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Z6_9STRA)

HSP 1 Score: 107 bits (267), Expect = 3.120e-24
Identity = 58/103 (56.31%), Postives = 71/103 (68.93%), Query Frame = 1
Query:   61 MDTPGRWLDVVPELAGLDALVKRYSKAGLYPEVMRVNQLDAGVLDNELHDLLRTQLNRVFSMFQASSVERYKPEVEALLRLLLWRFTVWSRLPTPGMKLQSLR 369
            + +P  W   +PELA + AL          P V+RVNQLDAGVLD EL +LL+ QL RVFSM      ERYKPEVEA LRLLLW +TV +++PTPGM+LQ+LR
Sbjct:    6 LPSPTDWAKPIPELAQVQALATATPVPS--PPVLRVNQLDAGVLDGELMELLKMQLARVFSMCSQGFSERYKPEVEAGLRLLLWGYTVMAQVPTPGMRLQNLR 106          
BLAST of mRNA_P-wetherbeei_contig5413.2.1 vs. uniprot
Match: A0A0L0HLU8_SPIPD (Peroxin-2 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HLU8_SPIPD)

HSP 1 Score: 104 bits (260), Expect = 1.110e-22
Identity = 64/195 (32.82%), Postives = 101/195 (51.79%), Query Frame = 1
Query:  157 VMRVNQLDAGVLDNELHDLLRTQLNRVFSMFQASSVERYKPEVEALLRLLLWRFTVWSRLPTPGMKLQSLRYGDGRAPQAPFLDGALSHGGNDGSXXXXXXXXXXXXXXXXXXXXXXATATQRLAFGMLYIGAPWALTRLTRWALACGWDERPDGDWRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLER 741
            V+RV+QLDA +LD EL  +++ Q   +FS+F+ +  E+Y+PE  ALL+ L+   +++S   + G++LQ+L+Y +              H G                           +  Q++A  +LYIG  W   R+ R A    W  +P+ DWR+ VW  L++AE  YRAL L+N L+FL  G Y + L+R
Sbjct:   73 VLRVSQLDAELLDAELTSVVKEQFLAIFSLFKPTLKEKYEPEFTALLQYLMCHLSIYSMGASYGLQLQNLKYRN-----------EARHSGR----------------LEVSAIDAPLSKWQKMAHALLYIGGRWGWIRVNRHATTHEWSAQPERDWRNRVWTYLQKAENVYRALSLVNFLVFLYNGRYRSLLDR 240          
BLAST of mRNA_P-wetherbeei_contig5413.2.1 vs. uniprot
Match: F0ZHQ8_DICPU (Peroxin-2 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZHQ8_DICPU)

HSP 1 Score: 103 bits (258), Expect = 4.380e-22
Identity = 61/195 (31.28%), Postives = 105/195 (53.85%), Query Frame = 1
Query:  157 VMRVNQLDAGVLDNELHDLLRTQLNRVFSMFQASSVERYKPEVEALLRLLLWRFTVWSRLPTPGMKLQSLRYGDGRAPQAPFLDGALSHGGNDGSXXXXXXXXXXXXXXXXXXXXXXATATQRLAFGMLYIGAPWALTRLTRWALACGWDERPDGDWRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLER 741
            ++RV+QLD+  LD E+ DLLR+Q  ++FS F+ + ++R++PE+ A+L+ ++++ ++++   T G +LQ+L + + +A              N GS                       T  Q+   G++ IG  W  TRL R+++  GW ERP  D+R  +W  +   E++Y+AL +LN L FL  G Y T + R
Sbjct:  114 IVRVSQLDSARLDEEILDLLRSQFMKIFSFFKPNFIQRFQPEINAILKSIIFKLSIFNLGTTYGNQLQNLTFRNEKAFDP-----------NRGSDQLTKL-----------------TLRQKWLSGLINIGGEWLWTRLNRYSIKEGWSERPSTDFRKRLWNLMNFLESSYKALSILNFLAFLYDGKYVTLVNR 280          
BLAST of mRNA_P-wetherbeei_contig5413.2.1 vs. uniprot
Match: A0A162XZ02_PHYB8 (RING-type domain-containing protein (Fragment) n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162XZ02_PHYB8)

HSP 1 Score: 101 bits (251), Expect = 1.480e-21
Identity = 67/221 (30.32%), Postives = 112/221 (50.68%), Query Frame = 1
Query:   79 WLDVVPELAGLDALVKRYSKAGLYPEVMRVNQLDAGVLDNELHDLLRTQLNRVFSMFQASSVERYKPEVEALLRLLLWRFTVWSRLPTPGMKLQSLRYGDGRAPQAPFLDGALSHGGNDGSXXXXXXXXXXXXXXXXXXXXXXATATQRLAFGMLYIGAPWALTRLTRWALACGWDERPDGDWRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLER 741
            W ++ P L+ +   +     + L  +VMRV+QLD+ +LD+EL  +L+ QL    S+F  +  E  +PE+ ALL L L++ +++    T G +LQ+L+Y +              HGG                           T TQ++ +G+L +G  +A TR +R   + GW E  + D R+ ++R L+  E  ++AL L+N L+FL +G Y T L+R
Sbjct:    6 WKNIQPALSSVRRSMASLQTSSL--KVMRVSQLDSDILDSELFTILKEQLWNALSLFNPAFKESIEPELLALLNLALFKLSIYDTSATYGAQLQNLKYRN-----------EWKHGG----------------PLESIAKDAPLTKTQKIIYGVLSVGGQYAWTRTSRLVTSRGWGELDESDIRNKIYRVLQAGEKYWKALSLVNFLVFLYSGKYRTLLDR 197          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5413.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKS8_9PHAE1.950e-3638.93RING-type domain-containing protein n=2 Tax=Ectoca... [more]
W7TYI4_9STRA8.240e-3037.05Peroxin-2 n=1 Tax=Nannochloropsis gaditana TaxID=7... [more]
A0A4D9D9T6_9STRA3.340e-2936.24Pex2_Pex12 domain-containing protein n=1 Tax=Nanno... [more]
A0A4P9WGU4_9FUNG8.390e-2831.66Pex12 amino terminal region-domain-containing prot... [more]
C1E8X2_MICCC3.770e-2638.46RING-type domain-containing protein n=1 Tax=Microm... [more]
L8HGF4_ACACA1.380e-2431.79Pex2 / Pex12 amino terminal regioncontaining prote... [more]
A0A835Z8Z6_9STRA3.120e-2456.31RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A0L0HLU8_SPIPD1.110e-2232.82Peroxin-2 n=2 Tax=Spizellomyces TaxID=4815 RepID=A... [more]
F0ZHQ8_DICPU4.380e-2231.28Peroxin-2 n=1 Tax=Dictyostelium purpureum TaxID=57... [more]
A0A162XZ02_PHYB81.480e-2130.32RING-type domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5413contigP-wetherbeei_contig5413:2784..3857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LL84
Preferred namePEX2
PFAMsPex2_Pex12,zf-C3HC4
Model size743
Max annot lvl2759|Eukaryota
KEGG koko:K06664
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000038,GO:0000122,GO:0000151,GO:0000152,GO:0000209,GO:0000280,GO:0000428,GO:0000910,GO:0001764,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005829,GO:0005911,GO:0006082,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006694,GO:0006699,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007031,GO:0007049,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007285,GO:0007286,GO:0007399,GO:0008023,GO:0008104,GO:0008150,GO:0008152,GO:0008202,GO:0008206,GO:0008270,GO:0008285,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009062,GO:0009314,GO:0009416,GO:0009506,GO:0009628,GO:0009639,GO:0009640,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016049,GO:0016053,GO:0016054,GO:0016477,GO:0016558,GO:0016567,GO:0016591,GO:0016593,GO:0016740,GO:0017038,GO:0019216,GO:0019218,GO:0019219,GO:0019222,GO:0019395,GO:0019538,GO:0019752,GO:0019787,GO:0019941,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0030054,GO:0030154,GO:0030163,GO:0030258,GO:0030880,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031647,GO:0031648,GO:0031903,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032991,GO:0033036,GO:0033206,GO:0033233,GO:0033234,GO:0033365,GO:0033768,GO:0034440,GO:0034613,GO:0036211,GO:0040007,GO:0040011,GO:0042127,GO:0042579,GO:0042592,GO:0042632,GO:0042886,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043574,GO:0043632,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044743,GO:0045184,GO:0045540,GO:0045892,GO:0045934,GO:0046394,GO:0046395,GO:0046872,GO:0046890,GO:0046907,GO:0046914,GO:0048137,GO:0048145,GO:0048147,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0048878,GO:0050678,GO:0050680,GO:0050789,GO:0050794,GO:0050810,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051301,GO:0051321,GO:0051603,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0055029,GO:0055044,GO:0055085,GO:0055088,GO:0055092,GO:0055114,GO:0060255,GO:0061630,GO:0061640,GO:0061659,GO:0061695,GO:0062012,GO:0065002,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072330,GO:0072594,GO:0072662,GO:0072663,GO:0080090,GO:0090181,GO:0098588,GO:0098805,GO:0106118,GO:0140013,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1902494,GO:1902679,GO:1902930,GO:1903046,GO:1903320,GO:1903321,GO:1903506,GO:1903507,GO:1990234,GO:1990351,GO:1990415,GO:1990429,GO:2000112,GO:2000113,GO:2001141
Exons2
Evalue4.74e-37
EggNOG OGsKOG2879@1|root,KOG2879@2759|Eukaryota
Descriptionprotein import into peroxisome matrix
Cds size741
COG categoryS
BRITEko00000,ko00001,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186808.9986994-CDS-P-wetherbeei_contig5413:2783..30351683186808.9986994-CDS-P-wetherbeei_contig5413:2783..3035Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5413 2784..3035 +
1683186809.0125248-CDS-P-wetherbeei_contig5413:3368..38571683186809.0125248-CDS-P-wetherbeei_contig5413:3368..3857Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5413 3369..3857 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5413.2.1prot_P-wetherbeei_contig5413.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5413 2784..3857 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5413.2.1

>prot_P-wetherbeei_contig5413.2.1 ID=prot_P-wetherbeei_contig5413.2.1|Name=mRNA_P-wetherbeei_contig5413.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=247bp
LSPFHLVPSVFPSFTRQREKMDTPGRWLDVVPELAGLDALVKRYSKAGLY
PEVMRVNQLDAGVLDNELHDLLRTQLNRVFSMFQASSVERYKPEVEALLR
LLLWRFTVWSRLPTPGMKLQSLRYGDGRAPQAPFLDGALSHGGNDGSTSS
GGGVGTSGGGGNGGGFGGGATATQRLAFGMLYIGAPWALTRLTRWALACG
WDERPDGDWRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLER
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mRNA from alignment at P-wetherbeei_contig5413:2784..3857+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5413.2.1 ID=mRNA_P-wetherbeei_contig5413.2.1|Name=mRNA_P-wetherbeei_contig5413.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1074bp|location=Sequence derived from alignment at P-wetherbeei_contig5413:2784..3857+ (Phaeothamnion wetherbeei SAG_119_79)
CTCTCCCCCTTCCATCTTGTCCCTTCTGTCTTCCCCTCCTTCACACGTCA AAGGGAGAAGATGGATACGCCGGGACGATGGCTTGACGTCGTGCCCGAGC TGGCGGGCCTCGATGCGCTCGTCAAGCGCTACTCAAAGGCGGGGTTGTAC CCAGAGGTGATGCGCGTGAATCAACTCGACGCCGGCGTTCTCGACAACGA GCTCCATGACCTTTTGAGGACGCAGCTGAATAGAGTGTTCTCCATGTTTC AGGTATGTGCCAGATCGCGTTACTCTTTTGTCTTGTCTGAAAGATTGTTC AAAGGCTCCTCTCCCCTTCAACGTTCATAGCAGCCTGTGAAAGCGAGGCG AAATAGGGGCAGCAGGAAAATAAAGTGTTTGGAACGCGGAAAATGCATCA CCTTTCCTTGCCACACAACCCTTCCTTGCTGTTCGCTTTCGGACATATGC AACAAGCACCACCATCCATATTCCTTTGGACACATGCCTCCTATCCCAGT GGAGCGTTCGGGCACTCTGAACCTCCCTGCAACGCCTTTCTCGGTCCTTT ACTCTCGTCGGTGCCTCCCTCTCGGCGACGTGTAGGCTTCTTCCGTAGAG CGCTACAAGCCGGAGGTCGAGGCGCTGTTGCGGCTGCTCCTCTGGCGCTT CACCGTCTGGTCCCGCCTGCCGACGCCAGGCATGAAGCTCCAGTCGCTGC GTTACGGCGACGGCCGGGCCCCACAGGCCCCTTTTCTCGACGGCGCCCTC TCCCATGGCGGCAACGACGGCAGCACCAGCAGCGGCGGCGGCGTCGGCAC CAGCGGCGGCGGCGGCAACGGCGGCGGCTTCGGCGGCGGGGCGACGGCGA CGCAGCGGCTGGCCTTTGGCATGCTCTACATCGGCGCGCCCTGGGCGCTC ACCCGCCTCACGCGCTGGGCACTGGCATGCGGCTGGGACGAGCGCCCCGA CGGCGACTGGCGGCACGCCGTTTGGCGGGCGCTCCGGCGGGCCGAGGCTG CCTACCGTGCGCTGTGGTTGCTTAACCTGTTGCTGTTTCTGCGGACGGGT GCCTACCCGACGCCACTGGAGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5413:2784..3857+

>mRNA_P-wetherbeei_contig5413.2.1 ID=mRNA_P-wetherbeei_contig5413.2.1|Name=mRNA_P-wetherbeei_contig5413.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=741bp|location=Sequence derived from alignment at P-wetherbeei_contig5413:2784..3857+ (Phaeothamnion wetherbeei SAG_119_79)
CTCTCCCCCTTCCATCTTGTCCCTTCTGTCTTCCCCTCCTTCACACGTCA
AAGGGAGAAGATGGATACGCCGGGACGATGGCTTGACGTCGTGCCCGAGC
TGGCGGGCCTCGATGCGCTCGTCAAGCGCTACTCAAAGGCGGGGTTGTAC
CCAGAGGTGATGCGCGTGAATCAACTCGACGCCGGCGTTCTCGACAACGA
GCTCCATGACCTTTTGAGGACGCAGCTGAATAGAGTGTTCTCCATGTTTC
AGGCTTCTTCCGTAGAGCGCTACAAGCCGGAGGTCGAGGCGCTGTTGCGG
CTGCTCCTCTGGCGCTTCACCGTCTGGTCCCGCCTGCCGACGCCAGGCAT
GAAGCTCCAGTCGCTGCGTTACGGCGACGGCCGGGCCCCACAGGCCCCTT
TTCTCGACGGCGCCCTCTCCCATGGCGGCAACGACGGCAGCACCAGCAGC
GGCGGCGGCGTCGGCACCAGCGGCGGCGGCGGCAACGGCGGCGGCTTCGG
CGGCGGGGCGACGGCGACGCAGCGGCTGGCCTTTGGCATGCTCTACATCG
GCGCGCCCTGGGCGCTCACCCGCCTCACGCGCTGGGCACTGGCATGCGGC
TGGGACGAGCGCCCCGACGGCGACTGGCGGCACGCCGTTTGGCGGGCGCT
CCGGCGGGCCGAGGCTGCCTACCGTGCGCTGTGGTTGCTTAACCTGTTGC
TGTTTCTGCGGACGGGTGCCTACCCGACGCCACTGGAGCGG
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