mRNA_P-wetherbeei_contig5404.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5404.3.1
Unique NamemRNA_P-wetherbeei_contig5404.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5404.3.1 vs. uniprot
Match: A0A7S3LHQ5_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LHQ5_9STRA)

HSP 1 Score: 166 bits (419), Expect = 6.930e-48
Identity = 72/142 (50.70%), Postives = 98/142 (69.01%), Query Frame = 1
Query:   22 RFTDEWVVDRTLFEHVNQGSCSCCGSVHAIMDVAALMATCSDIETDDGRADQRSPWPPFLRGEVWSERVKLRRTMKADMPVYKAFWDEHGREFRQWWEDQGLQDRSRLLSMPVEEVSVQLSTRYDVRGAYSVVLCAANEQVQ 447
            RF D WVVDR +FE VNQG CSCCG  H  M+++  MA CSD+ETDDG+ +++SPWP F++ EVW++RVK RR MK ++  YK   + HG++F QWW D   + R     MP EE+ VQ +T ++ + AY VVLC+  EQV+
Sbjct:    5 RFLDTWVVDRVMFEFVNQGGCSCCGFQHGGMEMSDFMALCSDVETDDGKTEKKSPWPKFMQDEVWADRVKFRRIMKKEITKYKKLSEAHGQDFVQWWLDADEKTRKSCFMMPKEELKVQFNTVFEFKTAYQVVLCSVLEQVE 146          
BLAST of mRNA_P-wetherbeei_contig5404.3.1 vs. uniprot
Match: A0A2R5GD26_9STRA (Histone-lysine N-methyltransferase setd3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GD26_9STRA)

HSP 1 Score: 170 bits (431), Expect = 7.770e-47
Identity = 73/142 (51.41%), Postives = 99/142 (69.72%), Query Frame = 1
Query:   22 RFTDEWVVDRTLFEHVNQGSCSCCGSVHAIMDVAALMATCSDIETDDGRADQRSPWPPFLRGEVWSERVKLRRTMKADMPVYKAFWDEHGREFRQWWEDQGLQDRSRLLSMPVEEVSVQLSTRYDVRGAYSVVLCAANEQVQ 447
            RF D WVVDR +FE VNQG C+CCG  H  M +   MA CSD+ETDDGR ++RSPWPPF++ EVW++RVK RR +K  M +Y+  +++HG +F  WW +   ++R R   MP EE+ VQ ++ YD + AY VVLC+  EQV+
Sbjct:  358 RFLDTWVVDRVMFEFVNQGGCNCCGFTHGGMGMQDFMALCSDVETDDGRTERRSPWPPFMQNEVWADRVKFRRMLKETMGIYRERFEQHGADFVTWWLELDPKERKRCFMMPKEELRVQFNSTYDFQTAYQVVLCSVLEQVE 499          
BLAST of mRNA_P-wetherbeei_contig5404.3.1 vs. uniprot
Match: A0A8K1CD15_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD15_PYTOL)

HSP 1 Score: 150 bits (380), Expect = 1.910e-42
Identity = 69/142 (48.59%), Postives = 92/142 (64.79%), Query Frame = 1
Query:   22 RFTDEWVVDRTLFEHVNQGSCSCCGSVHAIMDVAALMATCSDIETDDGRADQRSPWPPFLRGEVWSERVKLRRTMKADMPVYKAFWDEHGREFRQWWEDQGLQDRSRLLSMPVEEVSVQLSTRYDVRGAYSVVLCAANEQVQ 447
            +F D WVVDRT+FE+VNQG CSCCG  H IMDVA L   CSD E+DD + +Q SPWP F+  E+ +ER +LR  MK DM  YKAF D H + F  WW+      ++R+  +P E+V     +   V+G+Y +VLCA  EQ++
Sbjct:    3 KFEDCWVVDRTMFEYVNQGGCSCCGVTHQIMDVAQLADRCSDWESDDEKKEQFSPWPTFIHEEILTERARLRVVMKEDMRQYKAFIDTHMKGFSAWWQQLDESTKNRVFQVPDEDVMDYFKSHAKVKGSYEIVLCAVMEQLR 144          
BLAST of mRNA_P-wetherbeei_contig5404.3.1 vs. uniprot
Match: W2GLS0_PHYPR (Uncharacterized protein n=11 Tax=Phytophthora parasitica TaxID=4792 RepID=W2GLS0_PHYPR)

HSP 1 Score: 147 bits (372), Expect = 5.340e-42
Identity = 66/142 (46.48%), Postives = 91/142 (64.08%), Query Frame = 1
Query:   22 RFTDEWVVDRTLFEHVNQGSCSCCGSVHAIMDVAALMATCSDIETDDGRADQRSPWPPFLRGEVWSERVKLRRTMKADMPVYKAFWDEHGREFRQWWEDQGLQDRSRLLSMPVEEVSVQLSTRYDVRGAYSVVLCAANEQVQ 447
            ++ D WVVDRT+FE+VNQG CSCCG  H IM++A   + CSD ETDD   +Q SPWP F+  E+ +ER +LR  MKADM  YK F + H + F  WW   G   ++R+  +P EEV      +  V+G+Y ++LCA  EQ++
Sbjct:    3 KYEDTWVVDRTMFEYVNQGGCSCCGVTHTIMNLADFASKCSDWETDDENKEQFSPWPMFIHEEILTERARLRMAMKADMNKYKDFVETHMKGFIDWWSRLGENTKTRIFQLPSEEVLSYFRIQTKVKGSYEILLCAILEQIR 144          
BLAST of mRNA_P-wetherbeei_contig5404.3.1 vs. uniprot
Match: A0A225VF63_9STRA (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A225VF63_9STRA)

HSP 1 Score: 147 bits (372), Expect = 2.340e-41
Identity = 65/142 (45.77%), Postives = 91/142 (64.08%), Query Frame = 1
Query:   22 RFTDEWVVDRTLFEHVNQGSCSCCGSVHAIMDVAALMATCSDIETDDGRADQRSPWPPFLRGEVWSERVKLRRTMKADMPVYKAFWDEHGREFRQWWEDQGLQDRSRLLSMPVEEVSVQLSTRYDVRGAYSVVLCAANEQVQ 447
            ++ D WVVDRT+FE+VNQG CSCCG  H IM+ A   + CSD E+DD + +  SPWP F+  E+ +ER +LR  MKADM  YK F D H + F  WW   G   ++R+  +PV+EV      +  V+G+Y ++LCA  EQ++
Sbjct:    3 KYEDTWVVDRTMFEYVNQGGCSCCGVTHTIMNFADFASKCSDWESDDEKKEHYSPWPMFIHEEILTERARLRMAMKADMNKYKDFVDTHMKGFMAWWSRLGENAKTRIFQLPVDEVLSYFRVQTKVKGSYEILLCAILEQIR 144          
BLAST of mRNA_P-wetherbeei_contig5404.3.1 vs. uniprot
Match: A0A5D6YQ28_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YQ28_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.320e-40
Identity = 68/142 (47.89%), Postives = 90/142 (63.38%), Query Frame = 1
Query:   22 RFTDEWVVDRTLFEHVNQGSCSCCGSVHAIMDVAALMATCSDIETDDGRADQRSPWPPFLRGEVWSERVKLRRTMKADMPVYKAFWDEHGREFRQWWEDQGLQDRSRLLSMPVEEVSVQLSTRYDVRGAYSVVLCAANEQVQ 447
            ++ D WVVDRT+FE+VNQG CSCCG  HAIMD+A     CSD ETDD R +Q SPWP F+  E+ +ER +LR  MK DM  YKAF D H   F +WW+      + R+  +  E+V      +  V+G+Y +VLCA  +QV+
Sbjct:    3 KYEDCWVVDRTMFEYVNQGGCSCCGVTHAIMDLATFADKCSDWETDDERKEQMSPWPSFIHEEILTERARLRVAMKDDMKRYKAFADAHMEGFAEWWKRLDESGKLRVFQLSDEDVLAFFRLQARVKGSYDIVLCAVLKQVK 144          
BLAST of mRNA_P-wetherbeei_contig5404.3.1 vs. uniprot
Match: A0A1Z5JRF2_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JRF2_FISSO)

HSP 1 Score: 144 bits (362), Expect = 1.090e-39
Identity = 68/146 (46.58%), Postives = 94/146 (64.38%), Query Frame = 1
Query:   22 RFTDEWVVDRTLFEHVNQGSCSCCGSVHAIMD-VAALMATCSDIETDDGRADQR----SPWPPFLRGEVWSERVKLRRTMKADMPVYKAFWDEHGREFRQWWEDQGLQDRSRLLSMPVEEVSVQLSTRYDVRGAYSVVLCAANEQV 444
            R+TDEW+ DR LF++V+ GSC+CCG VH + +  A L+   +D+ETD   A+ +    SPWPP LR +VWS+RV+LR+ +KADM  YK FWD H  EF QW  DQG     R   +   E+  ++  +Y++  A+ VVLCA  EQV
Sbjct:    3 RYTDEWLTDRVLFDYVSGGSCACCGFVHFLPNGTADLITALTDLETDQANAEIKALDDSPWPPDLRDQVWSDRVRLRQKLKADMSSYKEFWDTHEEEFVQWCHDQGASFWRRHFQLARNEIMDEVRQKYNIHSAFGVVLCAVVEQV 148          
BLAST of mRNA_P-wetherbeei_contig5404.3.1 vs. uniprot
Match: K3W812_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W812_GLOUD)

HSP 1 Score: 142 bits (357), Expect = 4.750e-39
Identity = 67/142 (47.18%), Postives = 90/142 (63.38%), Query Frame = 1
Query:   22 RFTDEWVVDRTLFEHVNQGSCSCCGSVHAIMDVAALMATCSDIETDDGRADQRSPWPPFLRGEVWSERVKLRRTMKADMPVYKAFWDEHGREFRQWWEDQGLQDRSRLLSMPVEEVSVQLSTRYDVRGAYSVVLCAANEQVQ 447
            ++ D WVVDRT+FE+VNQG CSCCG  HAIMD+A+    CSD ETDD + ++ SPWP F+  E+ +ER +LR  MK DM  YK F D H   F +WW+      ++R+  M  EEV         V+G+Y +VLCA  +QV+
Sbjct:    3 KYEDCWVVDRTMFEYVNQGGCSCCGVTHAIMDLASFAEKCSDWETDDEKKEKFSPWPSFIHEEILTERARLRVAMKDDMKSYKHFIDTHLPGFAEWWKRLDETGKARVFQMTDEEVMDFFRIHARVKGSYDIVLCAIMKQVK 144          
BLAST of mRNA_P-wetherbeei_contig5404.3.1 vs. uniprot
Match: A0A1V9YNR0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YNR0_9STRA)

HSP 1 Score: 140 bits (353), Expect = 7.420e-39
Identity = 63/143 (44.06%), Postives = 87/143 (60.84%), Query Frame = 1
Query:   19 LRFTDEWVVDRTLFEHVNQGSCSCCGSVHAIMDVAALMATCSDIETDDGRADQRSPWPPFLRGEVWSERVKLRRTMKADMPVYKAFWDEHGREFRQWWEDQGLQDRSRLLSMPVEEVSVQLSTRYDVRGAYSVVLCAANEQVQ 447
            + F D WVVD+T+FE+V+QG CSCCG   A+M+ AAL   CSD ETDD   +  SPWP F+  +V ++R  +R  +KA MP Y  FW ++G  F QWW+ Q    + RL  +   +V   + T  DV G YS+VL    EQ++
Sbjct:    1 MAFQDAWVVDKTMFEYVSQGGCSCCGLTTAMMNFAALADLCSDWETDDEERESFSPWPTFIHEDVQTQRALIRLRLKAHMPAYTTFWADYGDAFSQWWDAQAPTTKYRLFQLQDADVKSYVHTHGDVHGPYSIVLATVTEQIK 143          
BLAST of mRNA_P-wetherbeei_contig5404.3.1 vs. uniprot
Match: A0A2D4C6E1_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6E1_PYTIN)

HSP 1 Score: 140 bits (354), Expect = 8.900e-39
Identity = 63/142 (44.37%), Postives = 91/142 (64.08%), Query Frame = 1
Query:   22 RFTDEWVVDRTLFEHVNQGSCSCCGSVHAIMDVAALMATCSDIETDDGRADQRSPWPPFLRGEVWSERVKLRRTMKADMPVYKAFWDEHGREFRQWWEDQGLQDRSRLLSMPVEEVSVQLSTRYDVRGAYSVVLCAANEQVQ 447
            RF D WVVDRT+FE+VNQG CSCCG  H IMDVA+ +  CSD E+D+ + +  SPWP F+  E+ +ER +LR  MK D+  YK+F   H + F  WW+      ++R+  +P +++     T   V+G+Y +VLCA  EQ++
Sbjct:    3 RFDDCWVVDRTMFEYVNQGGCSCCGVTHQIMDVASFVERCSDWESDEEKNETLSPWPVFIHEEILTERARLRIVMKDDIERYKSFLATHMKGFMAWWQQLDAGGKTRVFQVPDDDLLDYFHTHVKVKGSYEIVLCAVLEQLR 144          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5404.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3LHQ5_9STRA6.930e-4850.70Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A2R5GD26_9STRA7.770e-4751.41Histone-lysine N-methyltransferase setd3 n=1 Tax=H... [more]
A0A8K1CD15_PYTOL1.910e-4248.59Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2GLS0_PHYPR5.340e-4246.48Uncharacterized protein n=11 Tax=Phytophthora para... [more]
A0A225VF63_9STRA2.340e-4145.77Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
A0A5D6YQ28_9STRA1.320e-4047.89Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1Z5JRF2_FISSO1.090e-3946.58Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
K3W812_GLOUD4.750e-3947.18Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1V9YNR0_9STRA7.420e-3944.06Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A2D4C6E1_PYTIN8.900e-3944.37Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5404contigP-wetherbeei_contig5404:2934..3798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo139889
Model size447
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.84e-44
EggNOG OGs2B923@1|root,2S0T1@2759|Eukaryota,3QDUM@4776|Peronosporales
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_011560.1
Cds size435
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186807.8256097-UTR-P-wetherbeei_contig5404:2933..29451683186807.8256097-UTR-P-wetherbeei_contig5404:2933..2945Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5404 2934..2945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186807.836373-CDS-P-wetherbeei_contig5404:2945..30081683186807.836373-CDS-P-wetherbeei_contig5404:2945..3008Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5404 2946..3008 +
1683186807.8469934-CDS-P-wetherbeei_contig5404:3101..31771683186807.8469934-CDS-P-wetherbeei_contig5404:3101..3177Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5404 3102..3177 +
1683186807.861426-CDS-P-wetherbeei_contig5404:3295..34851683186807.861426-CDS-P-wetherbeei_contig5404:3295..3485Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5404 3296..3485 +
1683186807.8717358-CDS-P-wetherbeei_contig5404:3692..37981683186807.8717358-CDS-P-wetherbeei_contig5404:3692..3798Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5404 3693..3798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5404.3.1prot_P-wetherbeei_contig5404.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5404 2946..3798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5404.3.1

>prot_P-wetherbeei_contig5404.3.1 ID=prot_P-wetherbeei_contig5404.3.1|Name=mRNA_P-wetherbeei_contig5404.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
MSLRFTDEWVVDRTLFEHVNQGSCSCCGSVHAIMDVAALMATCSDIETDD
GRADQRSPWPPFLRGEVWSERVKLRRTMKADMPVYKAFWDEHGREFRQWW
EDQGLQDRSRLLSMPVEEVSVQLSTRYDVRGAYSVVLCAANEQVQ
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mRNA from alignment at P-wetherbeei_contig5404:2934..3798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5404.3.1 ID=mRNA_P-wetherbeei_contig5404.3.1|Name=mRNA_P-wetherbeei_contig5404.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=865bp|location=Sequence derived from alignment at P-wetherbeei_contig5404:2934..3798+ (Phaeothamnion wetherbeei SAG_119_79)
TCAAAGCACGTCATGTCGCTCCGCTTCACGGACGAGTGGGTTGTGGATCG CACGCTGTTCGAGCACGTCAATCAGGTACGGTGCGATTGCGAAAACGTTG AAAACTTCGCCACTTCCTTTCTCTTTCGTTCACGCTCTGCCCTTCTCTGA TCCACTGACGCGCGGCAGGGTTCGTGCTCATGCTGTGGCTCCGTGCACGC GATCATGGACGTGGCCGCCCTGATGGCGACTTGCTCTGATATCGGTGAGG GGGTAGAGACAGTTTTTGGCAAGAGTTCTTCTCCACTTTTACACTCTTGG TGGTGCAGCGTGCGCCCAGCCTCTCGAGAATTTTTTCACGGGCTGCCTTC CACTTCATGCAGAAACCGACGACGGCCGCGCCGACCAGCGCTCTCCGTGG CCTCCATTTTTGCGGGGTGAGGTGTGGAGCGAGCGCGTCAAGCTTCGACG CACGATGAAGGCGGACATGCCAGTCTACAAGGCGTTTTGGGACGAGCACG GCCGTGAGTTTCGGCAATGGTGGGAAGACCAAGGCCTGCAGGACAGAAGC AGGTATATTCAAAATTCTCGGTATCAACGCTTCACATCCTCTCTGCTTCC ATATTGGTCTGAGGTGCAGAGCGCCGACTGGACCGCTCTTCTAGGCATTC TCTGCTTCGGCCGGGTCGCTTCCGGCAGCGCCTCAGAAGTAATTGTCCTG TTCGGCTTCGCACTCGCGACTTGGCTTGACGCCTGCTCCCGGCTTTTCTC TCTACGCAGGTTGCTGTCCATGCCGGTTGAGGAGGTGTCCGTCCAGCTGA GCACGCGCTACGACGTGCGCGGCGCCTACAGCGTCGTGCTTTGCGCGGCG AACGAGCAGGTACAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5404:2934..3798+

>mRNA_P-wetherbeei_contig5404.3.1 ID=mRNA_P-wetherbeei_contig5404.3.1|Name=mRNA_P-wetherbeei_contig5404.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig5404:2934..3798+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCTCCGCTTCACGGACGAGTGGGTTGTGGATCGCACGCTGTTCGA
GCACGTCAATCAGGGTTCGTGCTCATGCTGTGGCTCCGTGCACGCGATCA
TGGACGTGGCCGCCCTGATGGCGACTTGCTCTGATATCGAAACCGACGAC
GGCCGCGCCGACCAGCGCTCTCCGTGGCCTCCATTTTTGCGGGGTGAGGT
GTGGAGCGAGCGCGTCAAGCTTCGACGCACGATGAAGGCGGACATGCCAG
TCTACAAGGCGTTTTGGGACGAGCACGGCCGTGAGTTTCGGCAATGGTGG
GAAGACCAAGGCCTGCAGGACAGAAGCAGGTTGCTGTCCATGCCGGTTGA
GGAGGTGTCCGTCCAGCTGAGCACGCGCTACGACGTGCGCGGCGCCTACA
GCGTCGTGCTTTGCGCGGCGAACGAGCAGGTACAG
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