mRNA_P-wetherbeei_contig54004.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54004.1.1
Unique NamemRNA_P-wetherbeei_contig54004.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: A0A521ZFA6_9BURK (Negative regulator of flagellin synthesis n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A521ZFA6_9BURK)

HSP 1 Score: 57.8 bits (138), Expect = 1.740e-9
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 1
Query:   37 EFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDLFG 153
            EFD+GRVE IKQ+IRDG+F VDSGVVADKL+ +V +L G
Sbjct:   60 EFDAGRVESIKQAIRDGQFLVDSGVVADKLLQSVQELLG 98          
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: UPI000A171D45 (flagellar biosynthesis anti-sigma factor FlgM n=1 Tax=Derxia lacustris TaxID=764842 RepID=UPI000A171D45)

HSP 1 Score: 54.7 bits (130), Expect = 2.760e-8
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    4 LASLSASESNAEFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDL 147
            L S+ A      FDS +VE IKQ+IRDG+FEVDS  VADKLI+ V+D+
Sbjct:   47 LKSVEADIKEPAFDSAKVESIKQAIRDGKFEVDSSAVADKLISGVSDM 94          
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: UPI001F5354A8 (flagellar biosynthesis anti-sigma factor FlgM n=2 Tax=Calidifontimicrobium TaxID=2828371 RepID=UPI001F5354A8)

HSP 1 Score: 53.1 bits (126), Expect = 1.040e-7
Identity = 24/45 (53.33%), Postives = 38/45 (84.44%), Query Frame = 1
Query:   13 LSASESNAEFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDL 147
            L+ +E NA+FD+ +V++I Q+IRDG++EV++ V+ADKLIAN  +L
Sbjct:   47 LAVTEGNADFDAEKVQRIAQAIRDGKYEVNADVIADKLIANAREL 91          
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: A0A8B6X7M3_9BURK (Negative regulator of flagellin synthesis n=1 Tax=Derxia gummosa DSM 723 TaxID=1121388 RepID=A0A8B6X7M3_9BURK)

HSP 1 Score: 52.0 bits (123), Expect = 3.160e-7
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1
Query:    4 LASLSASESNAEFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDL 147
            L S+ A      FD+ +VEQ+K +IRDG+FEVDS  VADKLIA  +D+
Sbjct:   47 LKSVEADIKEPSFDAAKVEQVKAAIRDGKFEVDSSAVADKLIAGSSDM 94          
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: UPI000FDF0A73 (flagellar biosynthesis anti-sigma factor FlgM n=1 Tax=Piscinibacter defluvii TaxID=1796922 RepID=UPI000FDF0A73)

HSP 1 Score: 52.0 bits (123), Expect = 3.440e-7
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 GLASLSASESNAEFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDLFG 153
            G  +L  +  NAEFD+ +VE+I Q+I DG F+V++  +ADKLIAN  +L G
Sbjct:   50 GAEALRGTAENAEFDAAKVERISQAISDGSFQVNAEAIADKLIANAQELLG 100          
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: A0A5C7Q3K4_9BURK (Negative regulator of flagellin synthesis n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A5C7Q3K4_9BURK)

HSP 1 Score: 50.8 bits (120), Expect = 9.550e-7
Identity = 25/49 (51.02%), Postives = 38/49 (77.55%), Query Frame = 1
Query:    7 ASLSASESNAEFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDLFG 153
            A+L A+ S A+FD+ +V++I Q+I DG F+V++ V+ADKLIAN  +L G
Sbjct:   51 ANLMANPSAADFDADKVQRISQAIADGSFQVNAEVIADKLIANAQELLG 99          
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: A0A368L3Z0_9BURK (Negative regulator of flagellin synthesis n=1 Tax=Parvibium lacunae TaxID=1888893 RepID=A0A368L3Z0_9BURK)

HSP 1 Score: 50.1 bits (118), Expect = 1.870e-6
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   40 FDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDLFGN 156
            FD+ +VE I Q+IRDG+F V+S VVADKL+A+V +L GN
Sbjct:   64 FDAQKVESITQAIRDGKFTVNSDVVADKLLASVRELVGN 102          
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: UPI001AE0A02D (flagellar biosynthesis anti-sigma factor FlgM n=1 Tax=Rhizobacter sp. AJA081-3 TaxID=2753607 RepID=UPI001AE0A02D)

HSP 1 Score: 50.1 bits (118), Expect = 1.950e-6
Identity = 24/51 (47.06%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    7 ASLSASESNAEFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDLFGNV 159
            ASL A  S+A+FD+ +V +I Q+I DG +++++ V+ADKLIAN  ++ G V
Sbjct:   52 ASLMAGASSADFDAEKVSRISQAIADGSYKINAEVIADKLIANAQEVLGKV 102          
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: A0A536V4A6_9PROT (Negative regulator of flagellin synthesis n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536V4A6_9PROT)

HSP 1 Score: 49.7 bits (117), Expect = 2.140e-6
Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 1
Query:   28 SNAEFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDLFGNV 159
            S  EFD+ +V +I Q+IRDG+F+V++  +ADKLIAN  +L G V
Sbjct:   47 STPEFDADKVSRIAQAIRDGKFQVNAEAIADKLIANAQELLGKV 90          
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Match: A0A1A8XL18_9RHOO (Negative regulator of flagellin synthesis n=1 Tax=Candidatus Propionivibrio aalborgensis TaxID=1860101 RepID=A0A1A8XL18_9RHOO)

HSP 1 Score: 48.9 bits (115), Expect = 4.480e-6
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:    7 ASLSASESNAEFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDLFGN 156
            A LS ++    FD+ RV +IKQ+I DGRF +++G +AD+LIA+  +L  N
Sbjct:   41 AQLSTTDDQPPFDATRVSEIKQAISDGRFAINAGAIADRLIASAKELVDN 90          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54004.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521ZFA6_9BURK1.740e-971.79Negative regulator of flagellin synthesis n=1 Tax=... [more]
UPI000A171D452.760e-858.33flagellar biosynthesis anti-sigma factor FlgM n=1 ... [more]
UPI001F5354A81.040e-753.33flagellar biosynthesis anti-sigma factor FlgM n=2 ... [more]
A0A8B6X7M3_9BURK3.160e-754.17Negative regulator of flagellin synthesis n=1 Tax=... [more]
UPI000FDF0A733.440e-749.02flagellar biosynthesis anti-sigma factor FlgM n=1 ... [more]
A0A5C7Q3K4_9BURK9.550e-751.02Negative regulator of flagellin synthesis n=1 Tax=... [more]
A0A368L3Z0_9BURK1.870e-661.54Negative regulator of flagellin synthesis n=1 Tax=... [more]
UPI001AE0A02D1.950e-647.06flagellar biosynthesis anti-sigma factor FlgM n=1 ... [more]
A0A536V4A6_9PROT2.140e-652.27Negative regulator of flagellin synthesis n=1 Tax=... [more]
A0A1A8XL18_9RHOO4.480e-646.00Negative regulator of flagellin synthesis n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54004contigP-wetherbeei_contig54004:370..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog395494.Galf_1038
Preferred nameflgM
PFAMsFlgM
Model size165
Max annot lvl28216|Betaproteobacteria
KEGG koko:K02398
KEGG Pathwayko02020,ko02025,ko02026,ko02040,map02020,map02025,map02026,map02040
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.34e-07
EggNOG OGsCOG2747@1|root,COG2747@2|Bacteria,1NGJA@1224|Proteobacteria,2VXZB@28216|Betaproteobacteria,44W25@713636|Nitrosomonadales
DescriptionPFAM Anti-sigma-28 factor FlgM family protein
Cds size165
COG categoryKNU
BRITEko00000,ko00001,ko02035
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186807.3499532-CDS-P-wetherbeei_contig54004:369..5341683186807.3499532-CDS-P-wetherbeei_contig54004:369..534Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54004 370..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54004.1.1prot_P-wetherbeei_contig54004.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54004 370..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54004.1.1

>prot_P-wetherbeei_contig54004.1.1 ID=prot_P-wetherbeei_contig54004.1.1|Name=mRNA_P-wetherbeei_contig54004.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp
GLASLSASESNAEFDSGRVEQIKQSIRDGRFEVDSGVVADKLIANVNDLF
GNVH*
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mRNA from alignment at P-wetherbeei_contig54004:370..534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54004.1.1 ID=mRNA_P-wetherbeei_contig54004.1.1|Name=mRNA_P-wetherbeei_contig54004.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig54004:370..534- (Phaeothamnion wetherbeei SAG_119_79)
GGCCTGGCTTCCCTGTCCGCGAGCGAAAGCAATGCGGAATTCGACTCCGG ACGCGTCGAACAGATCAAGCAGTCGATTCGTGACGGAAGGTTCGAAGTCG ATTCGGGCGTAGTCGCCGACAAGCTGATCGCCAACGTAAACGACCTTTTC GGCAATGTCCACTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54004:370..534-

>mRNA_P-wetherbeei_contig54004.1.1 ID=mRNA_P-wetherbeei_contig54004.1.1|Name=mRNA_P-wetherbeei_contig54004.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig54004:370..534- (Phaeothamnion wetherbeei SAG_119_79)
GGCCTGGCTTCCCTGTCCGCGAGCGAAAGCAATGCGGAATTCGACTCCGG
ACGCGTCGAACAGATCAAGCAGTCGATTCGTGACGGAAGGTTCGAAGTCG
ATTCGGGCGTAGTCGCCGACAAGCTGATCGCCAACGTAAACGACCTTTTC
GGCAATGTCCACTAA
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