mRNA_P-wetherbeei_contig53886.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53886.1.1
Unique NamemRNA_P-wetherbeei_contig53886.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig53886.1.1 vs. uniprot
Match: A0A3D5DGX2_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DGX2_9GAMM)

HSP 1 Score: 112 bits (281), Expect = 2.050e-30
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:   16 VFPVDRIRARLNADPEFKLAARFWYCDLRFKVGDELYFMRVENGRVDSFNHGTHGFDPYTINIGGPVEVW 225
            + PV+ I ARLN+DPEF L ARFWYCD+RF +G E YFM +ENGRV+SF  GT+GFDPYTIN+ G  EVW
Sbjct:    8 IIPVNDIVARLNSDPEFLLTARFWYCDIRFVIGAEQYFMHIENGRVESFTQGTNGFDPYTINLSGSEEVW 77
[Close]
BLAST of mRNA_P-wetherbeei_contig53886.1.1 vs. uniprot
Match: A0A1X7PXV9_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium australicum TaxID=536018 RepID=A0A1X7PXV9_9HYPH)

HSP 1 Score: 99.8 bits (247), Expect = 2.530e-25
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:    1 MTSPLVFPVDRIRARLNADPEFKLAARFWYCDLRFKVGDELYFMRVENGRVDSFNHGTHGFDPYTINIGGPVEVW 225
            M   + F VD IR ++NAD E+ LAAR+WY  +RF +G + YFMRVE+GRV  F  GT GFDPY I+IG P EVW
Sbjct:    1 MQESITFDVDEIRLQVNADKEWTLAARYWYARIRFSIGADRYFMRVEDGRVTEFVAGTQGFDPYQIDIGAPAEVW 75
[Close]
BLAST of mRNA_P-wetherbeei_contig53886.1.1 vs. uniprot
Match: A0A1Z9U7M5_9GAMM (Uncharacterized protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9U7M5_9GAMM)

HSP 1 Score: 90.1 bits (222), Expect = 1.650e-21
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:   22 PVDRIRARLNADPEFKLAARFWYCDLRFKVGDELYFMRVENGRVDSFNHGTHGFDPYTINIGGPVEVW 225
            P   I+  LN+D EF+L+AR+WYCDLRF VG++ Y+M +++G V +F  G+ GFDPYTIN   P + W
Sbjct:    8 PTLAIKNALNSDKEFRLSARYWYCDLRFGVGEDFYYMTIKDGEVSTFVKGSDGFDPYTINFSAPEDFW 75
[Close]
BLAST of mRNA_P-wetherbeei_contig53886.1.1 vs. uniprot
Match: A0A7G7MFR4_9PSEU (Uncharacterized protein n=1 Tax=Pseudonocardia sp. CGMCC 4.1532 TaxID=2761535 RepID=A0A7G7MFR4_9PSEU)

HSP 1 Score: 56.6 bits (135), Expect = 1.990e-8
Identity = 24/66 (36.36%), Postives = 35/66 (53.03%), Query Frame = 1 
Query:   28 DRIRARLNADPEFKLAARFWYCDLRFKVGDELYFMRVENGRVDSFNHGTHGFDPYTINIGGPVEVW 225
            DR+R  LNADPEF+L AR+W    R     +   +R+ +G V + + G   FD +   + G  E W
Sbjct:    6 DRLRDALNADPEFRLQARYWNTQFRIVTESQNLLVRLADGEVTAVDAGATPFDTWDFQLAGTAEHW 71
[Close]
BLAST of mRNA_P-wetherbeei_contig53886.1.1 vs. uniprot
Match: UPI001C4A247B (hypothetical protein n=1 Tax=Pseudonocardia oceani TaxID=2792013 RepID=UPI001C4A247B)

HSP 1 Score: 56.2 bits (134), Expect = 2.750e-8
Identity = 24/66 (36.36%), Postives = 35/66 (53.03%), Query Frame = 1 
Query:   28 DRIRARLNADPEFKLAARFWYCDLRFKVGDELYFMRVENGRVDSFNHGTHGFDPYTINIGGPVEVW 225
            DR+R  LNADPEF+L AR+W    R     +   +R+ +G V + + G   FD +   + G  E W
Sbjct:    6 DRLREALNADPEFRLQARYWNTQFRVVTDAQSLLVRLRDGEVVAVDAGATPFDTWDFQLAGTAEHW 71
[Close]
BLAST of mRNA_P-wetherbeei_contig53886.1.1 vs. uniprot
Match: A0A853BA06_9PSEU (Uncharacterized protein n=1 Tax=Amycolatopsis endophytica TaxID=860233 RepID=A0A853BA06_9PSEU)

HSP 1 Score: 53.1 bits (126), Expect = 4.400e-7
Identity = 24/66 (36.36%), Postives = 34/66 (51.52%), Query Frame = 1 
Query:   28 DRIRARLNADPEFKLAARFWYCDLRFKVGDELYFMRVENGRVDSFNHGTHGFDPYTINIGGPVEVW 225
            DR+R  LNADPEF+L ARFW    R     +   +R+ +G V + +     FD +   + G  E W
Sbjct:    6 DRLREALNADPEFRLQARFWNTQFRVVTDTQNLLVRLVDGEVVTVDTAATPFDTWDFQLAGTDEHW 71
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53886.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A3D5DGX2_9GAMM2.050e-3067.14Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A1X7PXV9_9HYPH2.530e-2557.33Uncharacterized protein n=1 Tax=Mesorhizobium aust... [more]
A0A1Z9U7M5_9GAMM1.650e-2151.47Uncharacterized protein n=3 Tax=Gammaproteobacteri... [more]
A0A7G7MFR4_9PSEU1.990e-836.36Uncharacterized protein n=1 Tax=Pseudonocardia sp.... [more]
UPI001C4A247B2.750e-836.36hypothetical protein n=1 Tax=Pseudonocardia oceani... [more]
A0A853BA06_9PSEU4.400e-736.36Uncharacterized protein n=1 Tax=Amycolatopsis endo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53886contigP-wetherbeei_contig53886:311..535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog101510.RHA1_ro00321
Model size225
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.17e-11
EggNOG OGs2EVB2@1|root,33NRN@2|Bacteria,2H0F2@201174|Actinobacteria,4G60I@85025|Nocardiaceae
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186805.3749695-CDS-P-wetherbeei_contig53886:310..5351683186805.3749695-CDS-P-wetherbeei_contig53886:310..535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53886 311..535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53886.1.1prot_P-wetherbeei_contig53886.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53886 311..535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53886.1.1

>prot_P-wetherbeei_contig53886.1.1 ID=prot_P-wetherbeei_contig53886.1.1|Name=mRNA_P-wetherbeei_contig53886.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
MTSPLVFPVDRIRARLNADPEFKLAARFWYCDLRFKVGDELYFMRVENGR
VDSFNHGTHGFDPYTINIGGPVEVW
back to top

mRNA from alignment at P-wetherbeei_contig53886:311..535+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53886.1.1 ID=mRNA_P-wetherbeei_contig53886.1.1|Name=mRNA_P-wetherbeei_contig53886.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig53886:311..535+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACATCTCCACTAGTATTCCCAGTCGATCGCATCCGTGCGCGACTGAA
CGCCGACCCCGAATTCAAACTCGCGGCACGCTTCTGGTATTGCGACCTGC
GCTTCAAGGTCGGTGATGAGCTGTATTTCATGCGCGTCGAGAACGGGCGG
GTCGACAGCTTCAATCATGGTACCCATGGCTTCGACCCCTACACCATCAA
TATCGGTGGTCCGGTCGAGGTGTGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig53886:311..535+

>mRNA_P-wetherbeei_contig53886.1.1 ID=mRNA_P-wetherbeei_contig53886.1.1|Name=mRNA_P-wetherbeei_contig53886.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig53886:311..535+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACATCTCCACTAGTATTCCCAGTCGATCGCATCCGTGCGCGACTGAA
CGCCGACCCCGAATTCAAACTCGCGGCACGCTTCTGGTATTGCGACCTGC
GCTTCAAGGTCGGTGATGAGCTGTATTTCATGCGCGTCGAGAACGGGCGG
GTCGACAGCTTCAATCATGGTACCCATGGCTTCGACCCCTACACCATCAA
TATCGGTGGTCCGGTCGAGGTGTGG
back to top