mRNA_P-wetherbeei_contig53835.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53835.1.1
Unique NamemRNA_P-wetherbeei_contig53835.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53835.1.1 vs. uniprot
Match: A0A1F4DXA4_9PROT (TonB_C domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DXA4_9PROT)

HSP 1 Score: 50.8 bits (120), Expect = 1.490e-5
Identity = 25/76 (32.89%), Postives = 42/76 (55.26%), Query Frame = 1 
Query:    4 QYPRPAQEQKLSGWTIVMLLVDEQGKVLETAPVESSEAFMDYDKGVAEELRGSTFTPGKLDGRAVKTMMFVTVRFD 231
            ++P  A  +++ GW ++MLL+DE G V E + V    A   ++  V      + F+P + DGR V++ + V V FD
Sbjct:  158 EHPERAARERVGGWLLIMLLIDETGAVNEVSVVTGEPAGY-FEDAVRAVFAAARFSPARKDGRVVRSRVLVNVEFD 232
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BLAST of mRNA_P-wetherbeei_contig53835.1.1 vs. uniprot
Match: C0QD89_DESAH (Protein TonB n=1 Tax=Desulforapulum autotrophicum (strain ATCC 43914 / DSM 3382 / VKM B-1955 / HRM2) TaxID=177437 RepID=C0QD89_DESAH)

HSP 1 Score: 49.3 bits (116), Expect = 3.450e-5
Identity = 28/77 (36.36%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:    1 PQYPRPAQEQKLSGWTIVMLLVDEQGKVLETAPVESSEAFMDYDKGVAEELRGSTFTPGKLDGRAVKTMMFVTVRFD 231
            P YP  A+ + + GW  V  LV+ +G+V + + ++SS   + +D+ V   L    FTPG ++G AVKT +  T+RF+
Sbjct:  102 PVYPFQAKRRGIEGWVKVRFLVNPKGEVEDISILDSSPKNV-FDQSVLNALPRWKFTPGTVEGVAVKTRVETTIRFE 177
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BLAST of mRNA_P-wetherbeei_contig53835.1.1 vs. uniprot
Match: UPI00059BB79E (energy transducer TonB n=1 Tax=Desulforapulum autotrophicum TaxID=2296 RepID=UPI00059BB79E)

HSP 1 Score: 49.3 bits (116), Expect = 5.070e-5
Identity = 28/77 (36.36%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:    1 PQYPRPAQEQKLSGWTIVMLLVDEQGKVLETAPVESSEAFMDYDKGVAEELRGSTFTPGKLDGRAVKTMMFVTVRFD 231
            P YP  A+ + + GW  V  LV+ +G+V + + ++SS   + +D+ V   L    FTPG ++G AVKT +  T+RF+
Sbjct:  150 PVYPFQAKRRGIEGWVKVRFLVNPKGEVEDISILDSSPKNV-FDQSVLNALPRWKFTPGTVEGVAVKTRVETTIRFE 225
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53835.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1F4DXA4_9PROT1.490e-532.89TonB_C domain-containing protein n=1 Tax=Betaprote... [more]
C0QD89_DESAH3.450e-536.36Protein TonB n=1 Tax=Desulforapulum autotrophicum ... [more]
UPI00059BB79E5.070e-536.36energy transducer TonB n=1 Tax=Desulforapulum auto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53835contigP-wetherbeei_contig53835:1..243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog583355.Caka_2267
PFAMsTonB_C
Model size243
Max annot lvl414999|Opitutae
KEGG koko:K03832
KEGG TC2.C.1.1
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.16e-07
EggNOG OGsCOG0810@1|root,COG0810@2|Bacteria,46WRI@74201|Verrucomicrobia,3K8HB@414999|Opitutae
DescriptionBiopolymer transporter TonB
Cds size243
COG categoryM
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186804.9785652-CDS-P-wetherbeei_contig53835:0..2431683186804.9785652-CDS-P-wetherbeei_contig53835:0..243Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53835 1..243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53835.1.1prot_P-wetherbeei_contig53835.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53835 1..243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53835.1.1

>prot_P-wetherbeei_contig53835.1.1 ID=prot_P-wetherbeei_contig53835.1.1|Name=mRNA_P-wetherbeei_contig53835.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
PQYPRPAQEQKLSGWTIVMLLVDEQGKVLETAPVESSEAFMDYDKGVAEE
LRGSTFTPGKLDGRAVKTMMFVTVRFDPAGL
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mRNA from alignment at P-wetherbeei_contig53835:1..243+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53835.1.1 ID=mRNA_P-wetherbeei_contig53835.1.1|Name=mRNA_P-wetherbeei_contig53835.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig53835:1..243+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCAATATCCGCGGCCCGCGCAGGAGCAAAAGCTCTCCGGATGGACCAT
CGTCATGTTGCTGGTGGACGAACAGGGCAAGGTGTTGGAGACGGCACCAG
TGGAATCGAGCGAGGCCTTCATGGACTACGACAAAGGCGTGGCCGAGGAA
CTGCGTGGCTCCACCTTCACGCCTGGAAAACTCGACGGGCGGGCGGTCAA
GACGATGATGTTCGTCACGGTGCGGTTCGATCCGGCGGGGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53835:1..243+

>mRNA_P-wetherbeei_contig53835.1.1 ID=mRNA_P-wetherbeei_contig53835.1.1|Name=mRNA_P-wetherbeei_contig53835.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig53835:1..243+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCAATATCCGCGGCCCGCGCAGGAGCAAAAGCTCTCCGGATGGACCAT
CGTCATGTTGCTGGTGGACGAACAGGGCAAGGTGTTGGAGACGGCACCAG
TGGAATCGAGCGAGGCCTTCATGGACTACGACAAAGGCGTGGCCGAGGAA
CTGCGTGGCTCCACCTTCACGCCTGGAAAACTCGACGGGCGGGCGGTCAA
GACGATGATGTTCGTCACGGTGCGGTTCGATCCGGCGGGGCTG
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