mRNA_P-wetherbeei_contig53674.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53674.1.1
Unique NamemRNA_P-wetherbeei_contig53674.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig53674.1.1 vs. uniprot
Match: A0A7X8XN90_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XN90_9BURK)

HSP 1 Score: 145 bits (366), Expect = 4.880e-40
Identity = 70/168 (41.67%), Postives = 106/168 (63.10%), Query Frame = 2 
Query:    8 RISKTQSMLEYFFMEAGFYPNSLEELEQLINSKAPKGSKLLVVPKDPATNQPFSYTLEKTGRRYILTVPDSSKYPEGKPYVQSMEWGFLADLAELRRFEQIVRHTTNIIKAVATQVELFAKDHGNQFPNSLDDLMPKYMARYPTDPLTNKNFNYTKTATGYIVACPNP 511
            R+S+ Q++LEYF+ME G YP +L+ LE+  N   P     +VVP DP T++PFSY L +    Y L  PD S Y      +++++WG++A LA  RR EQ+       I+ +ATQ E++AKD+  +FP+ ++DL+PKY+ R P  P+T +      T+TGY ++CPNP
Sbjct:   41 RMSRLQTLLEYFYMETGEYPPNLKLLERFFNHGVPDQVPKVVVPVDPVTSKPFSYELSQDALHYRLAPPDPSVYGAQALTLETLDWGWMAALARQRRAEQMGMECRLKIEVLATQCEMYAKDNEGKFPSRVEDLIPKYLPRVPVCPITGQPHLLVPTSTGYFISCPNP 208
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53674.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X8XN90_9BURK4.880e-4041.67Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53674contigP-wetherbeei_contig53674:8..530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size523
Hectar predicted targeting categoryother localisation
Exons1
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186802.8462088-CDS-P-wetherbeei_contig53674:7..5021683186802.8462088-CDS-P-wetherbeei_contig53674:7..502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53674 8..502 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186802.8569396-UTR-P-wetherbeei_contig53674:502..5301683186802.8569396-UTR-P-wetherbeei_contig53674:502..530Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53674 503..530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53674.1.1prot_P-wetherbeei_contig53674.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53674 8..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53674.1.1

>prot_P-wetherbeei_contig53674.1.1 ID=prot_P-wetherbeei_contig53674.1.1|Name=mRNA_P-wetherbeei_contig53674.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
MLEYFFMEAGFYPNSLEELEQLINSKAPKGSKLLVVPKDPATNQPFSYTL
EKTGRRYILTVPDSSKYPEGKPYVQSMEWGFLADLAELRRFEQIVRHTTN
IIKAVATQVELFAKDHGNQFPNSLDDLMPKYMARYPTDPLTNKNFNYTKT
ATGYIVACPNPERYG
back to top

mRNA from alignment at P-wetherbeei_contig53674:8..530-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53674.1.1 ID=mRNA_P-wetherbeei_contig53674.1.1|Name=mRNA_P-wetherbeei_contig53674.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=523bp|location=Sequence derived from alignment at P-wetherbeei_contig53674:8..530- (Phaeothamnion wetherbeei SAG_119_79)
CTGGGCGCGTATCAGCAAGACCCAGTCGATGCTCGAATACTTCTTCATGG
AAGCGGGATTCTATCCCAACTCCCTGGAGGAGCTCGAGCAGCTCATCAAT
AGCAAGGCGCCCAAGGGCTCCAAGCTGCTGGTCGTTCCCAAGGACCCGGC
CACCAATCAGCCGTTCAGCTACACGCTCGAAAAAACCGGACGTCGCTACA
TCCTGACGGTTCCCGACAGCTCCAAGTATCCGGAAGGTAAGCCATACGTC
CAGAGCATGGAATGGGGATTCCTGGCGGATTTGGCGGAGCTGCGCCGTTT
CGAGCAGATTGTGCGCCACACGACCAATATCATCAAGGCTGTGGCGACCC
AGGTCGAGCTCTTTGCCAAGGACCACGGCAATCAGTTTCCCAACTCGCTC
GACGACTTGATGCCCAAGTATATGGCTCGTTACCCAACCGATCCCCTGAC
CAACAAAAACTTCAACTATACGAAAACGGCGACGGGCTACATTGTGGCTT
GCCCCAACCCCGAGCGTTACGGT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig53674:8..530-

>mRNA_P-wetherbeei_contig53674.1.1 ID=mRNA_P-wetherbeei_contig53674.1.1|Name=mRNA_P-wetherbeei_contig53674.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig53674:8..530- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGAATACTTCTTCATGGAAGCGGGATTCTATCCCAACTCCCTGGA
GGAGCTCGAGCAGCTCATCAATAGCAAGGCGCCCAAGGGCTCCAAGCTGC
TGGTCGTTCCCAAGGACCCGGCCACCAATCAGCCGTTCAGCTACACGCTC
GAAAAAACCGGACGTCGCTACATCCTGACGGTTCCCGACAGCTCCAAGTA
TCCGGAAGGTAAGCCATACGTCCAGAGCATGGAATGGGGATTCCTGGCGG
ATTTGGCGGAGCTGCGCCGTTTCGAGCAGATTGTGCGCCACACGACCAAT
ATCATCAAGGCTGTGGCGACCCAGGTCGAGCTCTTTGCCAAGGACCACGG
CAATCAGTTTCCCAACTCGCTCGACGACTTGATGCCCAAGTATATGGCTC
GTTACCCAACCGATCCCCTGACCAACAAAAACTTCAACTATACGAAAACG
GCGACGGGCTACATTGTGGCTTGCCCCAACCCCGAGCGTTACGGT
back to top