mRNA_P-wetherbeei_contig5349.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5349.1.1
Unique NamemRNA_P-wetherbeei_contig5349.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig5349.1.1 vs. uniprot
Match: B8CBE4_THAPS (Rieske domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBE4_THAPS)

HSP 1 Score: 75.9 bits (185), Expect = 1.040e-13
Identity = 45/103 (43.69%), Postives = 55/103 (53.40%), Query Frame = 1 
Query:    7 LTWADLINEAQLPFLGSTTSAVVSGLVIAIAVDPRGYIYAVGNKLPLAAQVTELAAPAKVSPPLPFIHLLSLCRVDDAGSGTDPVLGTKFDLESGAVSGPWCP 315
            L +   I+ A LP  GS TS V  GL I IAVDP+G +YA+G+K P                  P    LS  +VD  G+  DPVLGTKFDL++G V   WCP
Sbjct:   37 LQYVPCISTADLPKPGSATSGVAGGLAICIAVDPKGAVYALGDKCP------------------PVNQPLSFGKVDKDGTIADPVLGTKFDLKTGEVVS-WCP 120
[Close]
BLAST of mRNA_P-wetherbeei_contig5349.1.1 vs. uniprot
Match: A0A448ZLI8_9STRA (Rieske domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZLI8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.480e-13
Identity = 43/103 (41.75%), Postives = 54/103 (52.43%), Query Frame = 1 
Query:    7 LTWADLINEAQLPFLGSTTSAVVSGLVIAIAVDPRGYIYAVGNKLPLAAQVTELAAPAKVSPPLPFIHLLSLCRVDDAGSGTDPVLGTKFDLESGAVSGPWCP 315
            L +   I+   LP  GS TS V  GL I IAVDP+G +YA+G+K P                  P    LS  +V+  G+  DPVLGTKF L++G V G WCP
Sbjct:   37 LAYVPCISVEDLPAPGSATSGVAGGLAICIAVDPKGSVYALGDKCP------------------PVNQPLSFGKVNADGTIQDPVLGTKFSLKTGEVVGKWCP 121
[Close]
BLAST of mRNA_P-wetherbeei_contig5349.1.1 vs. uniprot
Match: K0SEG8_THAOC (Rieske domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SEG8_THAOC)

HSP 1 Score: 73.9 bits (180), Expect = 5.990e-13
Identity = 44/103 (42.72%), Postives = 54/103 (52.43%), Query Frame = 1 
Query:    7 LTWADLINEAQLPFLGSTTSAVVSGLVIAIAVDPRGYIYAVGNKLPLAAQVTELAAPAKVSPPLPFIHLLSLCRVDDAGSGTDPVLGTKFDLESGAVSGPWCP 315
            L +   I+   LP  GS TS V  GL I IAVDPRG +YA+G+K P                  P    LS  +V D G+ +DPVLGTKF L++G V   WCP
Sbjct:   41 LKYVPCISTDDLPAAGSATSGVAGGLAICIAVDPRGAVYALGDKCP------------------PVNQPLSFGKVGDDGTISDPVLGTKFSLKTGEVVS-WCP 124
[Close]
BLAST of mRNA_P-wetherbeei_contig5349.1.1 vs. uniprot
Match: A0A1E7FKP2_9STRA (Rieske domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKP2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.320e-11
Identity = 41/105 (39.05%), Postives = 53/105 (50.48%), Query Frame = 1 
Query:    1 SGLTWADLINEAQLPFLGSTTSAVVSGLVIAIAVDPRGYIYAVGNKLPLAAQVTELAAPAKVSPPLPFIHLLSLCRVDDAGSGTDPVLGTKFDLESGAVSGPWCP 315
            S L +   I+   LP  G  TS V  GL I IAVDP+G +YA+G+K P             ++ PL F  ++  C         DPVLGT F L++G V G WCP
Sbjct:    6 SKLQYVPCISVDDLPAPGGATSGVAGGLAICIAVDPKGAVYALGDKCP------------PINQPLSFGKVIDGCI-------QDPVLGTAFSLKTGEVVGKWCP 91
[Close]
BLAST of mRNA_P-wetherbeei_contig5349.1.1 vs. uniprot
Match: A0A7S2TF77_PROMC (Hypothetical protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2TF77_PROMC)

HSP 1 Score: 63.9 bits (154), Expect = 1.950e-9
Identity = 41/103 (39.81%), Postives = 55/103 (53.40%), Query Frame = 1 
Query:    7 LTWADLINEAQLPFLGSTTSAVVSGLVIAIAVDPRGYIYAVGNKLPLAAQVTELAAPAKVSPPLPFIHLLSLCRVDDAGSGTDPVLGTKFDLESGAVS-GPWC 312
            L +   I++ +LP  G  TS V  GL I IAVD +G ++A+G+K P                  P    LS  +V D G   DPVLGTKF+L++GAV+ G WC
Sbjct:   12 LQFVPCISKDELPGPGKATSGVAGGLAICIAVDEKGSVFALGDKCP------------------PINQPLSFGKVAD-GCIQDPVLGTKFNLKTGAVAEGDWC 95
[Close]
BLAST of mRNA_P-wetherbeei_contig5349.1.1 vs. uniprot
Match: A0A7S1DYV2_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1DYV2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.030e-9
Identity = 39/93 (41.94%), Postives = 49/93 (52.69%), Query Frame = 1 
Query:   37 QLPFLGSTTSAVVSGLVIAIAVDPRGYIYAVGNKLPLAAQVTELAAPAKVSPPLPFIHLLSLCRVDDAGSGTDPVLGTKFDLESGAVSGPWCP 315
             LP  G  TS V  GL I IAVDP+G +YA+G+K P                  P    LS  +V++ G+  DPVLGTKF L++G V   WCP
Sbjct:   62 DLPKPGFATSGVAGGLAICIAVDPKGSVYALGDKCP------------------PVNQPLSFGKVNNDGTIEDPVLGTKFSLKTGDVVS-WCP 135
[Close]
BLAST of mRNA_P-wetherbeei_contig5349.1.1 vs. uniprot
Match: A0A7S0BY90_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BY90_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.160e-9
Identity = 41/105 (39.05%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:    1 SGLTWADLINEAQLPFLGSTTSAVVSGLVIAIAVDPRGYIYAVGNKLPLAAQVTELAAPAKVSPPLPFIHLLSLCRVDDAGSGTDPVLGTKFDLESGAV-SGPWC 312
            S + +   ++   LP  GS TS V  GL I IAVDP+G IYA+G+K P             V+ PL F  + +       G+  DPVLGT +DL++G V  G WC
Sbjct:   94 SKMQYVPCVSLEDLPEPGSATSGVAGGLAICIAVDPKGAIYALGDKCP------------PVNQPLSFGKVTT-------GAIEDPVLGTNYDLKTGKVIDGTWC 179
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5349.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
B8CBE4_THAPS1.040e-1343.69Rieske domain-containing protein n=1 Tax=Thalassio... [more]
A0A448ZLI8_9STRA1.480e-1341.75Rieske domain-containing protein n=1 Tax=Pseudo-ni... [more]
K0SEG8_THAOC5.990e-1342.72Rieske domain-containing protein n=1 Tax=Thalassio... [more]
A0A1E7FKP2_9STRA2.320e-1139.05Rieske domain-containing protein n=1 Tax=Fragilari... [more]
A0A7S2TF77_PROMC1.950e-939.81Hypothetical protein n=1 Tax=Prorocentrum micans T... [more]
A0A7S1DYV2_9STRA2.030e-941.94Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A7S0BY90_9STRA5.160e-939.05Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5349contigP-wetherbeei_contig5349:1290..2117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps29842
PFAMsRieske_2
Model size610
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.7e-14
EggNOG OGs2DKM1@1|root,2S634@2759|Eukaryota,2XCF7@2836|Bacillariophyta
DescriptionRieske-like [2Fe-2S] domain
Cds size609
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186800.0064645-CDS-P-wetherbeei_contig5349:1290..16781683186800.0064645-CDS-P-wetherbeei_contig5349:1290..1678Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5349 1291..1678 -
1683186800.0177522-CDS-P-wetherbeei_contig5349:1896..21171683186800.0177522-CDS-P-wetherbeei_contig5349:1896..2117Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5349 1897..2117 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5349.1.1prot_P-wetherbeei_contig5349.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5349 1291..2117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5349.1.1

>prot_P-wetherbeei_contig5349.1.1 ID=prot_P-wetherbeei_contig5349.1.1|Name=mRNA_P-wetherbeei_contig5349.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=203bp
SGLTWADLINEAQLPFLGSTTSAVVSGLVIAIAVDPRGYIYAVGNKLPLA
AQVTELAAPAKVSPPLPFIHLLSLCRVDDAGSGTDPVLGTKFDLESGAVS
GPWCPFSSADCCPPCWPRWSPPPASRRCPPTRSACRMAWCRRKSTRAPGG
IRGDILERSPRRPRQGHQRLLLNRAGQGTRERGCGKKGEGREREVQRKRG
FGA
back to top

mRNA from alignment at P-wetherbeei_contig5349:1290..2117-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5349.1.1 ID=mRNA_P-wetherbeei_contig5349.1.1|Name=mRNA_P-wetherbeei_contig5349.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig5349:1290..2117- (Phaeothamnion wetherbeei SAG_119_79)
TCGGGCCTCACCTGGGCCGACTTGATCAACGAGGCACAACTACCGTTCCT
CGGCTCCACCACCTCCGCAGTGGTATCTGGTCTGGTTATCGCGATCGCCG
TCGATCCCCGTGGGTATATTTACGCCGTTGGAAACAAGCTGCCTCTGGCT
GCACAGGTGACTGAGCTTGCGGCGCCTGCCAAAGTTTCGCCTCCCCTTCC
CTTCATTCACCTTCTCTCCCTGTTGACAGTTGTTGCACCTTCACAAATAC
TCCCGTCGAATATATTTAACCATGCAACGCGGCGGTTCAGAACCTTCGCT
ATACAAACTTAGAAGAAGCCAGCCGCTCGCAAATCTAATTCTGCCTCTAT
TTTCCTCGAGCGCAAGCCCGCTGGCTCGCTCTGTTCTCTCCTCTTCTCCT
CCCTCCCCTCTCGTGCTGCCGCCGCCCAGCCCTCGCCAGATGCCGCGTCG
ACGATGCCGGCTCCGGGACGGACCCGGTCCTCGGCACCAAGTTCGACTTG
GAGTCGGGCGCTGTCTCGGGCCCCTGGTGCCCATTCTCCTCGGCCGACTG
CTGTCCCCCCTGCTGGCCCCGCTGGAGCCCGCCGCCGGCGAGCAGACGCT
GCCCACCTACGCGGTCCGCATGCAGGATGGCGTGGTGCAGGCGCAAATCG
ACACGCGCGCCAGGAGGCATTCGAGGCGATATACTAGAGCGCTCTCCTCG
ACGCCCGCGGCAAGGCCACCAGCGACTATTACTGAATAGGGCCGGCCAGG
GAACGAGGGAGAGAGGGTGCGGGAAGAAGGGAGAAGGAAGAGAAAGGGAA
GTTCAAAGGAAGAGGGGCTTTGGAGCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5349:1290..2117-

>mRNA_P-wetherbeei_contig5349.1.1 ID=mRNA_P-wetherbeei_contig5349.1.1|Name=mRNA_P-wetherbeei_contig5349.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=609bp|location=Sequence derived from alignment at P-wetherbeei_contig5349:1290..2117- (Phaeothamnion wetherbeei SAG_119_79)
TCGGGCCTCACCTGGGCCGACTTGATCAACGAGGCACAACTACCGTTCCT
CGGCTCCACCACCTCCGCAGTGGTATCTGGTCTGGTTATCGCGATCGCCG
TCGATCCCCGTGGGTATATTTACGCCGTTGGAAACAAGCTGCCTCTGGCT
GCACAGGTGACTGAGCTTGCGGCGCCTGCCAAAGTTTCGCCTCCCCTTCC
CTTCATTCACCTTCTCTCCCTATGCCGCGTCGACGATGCCGGCTCCGGGA
CGGACCCGGTCCTCGGCACCAAGTTCGACTTGGAGTCGGGCGCTGTCTCG
GGCCCCTGGTGCCCATTCTCCTCGGCCGACTGCTGTCCCCCCTGCTGGCC
CCGCTGGAGCCCGCCGCCGGCGAGCAGACGCTGCCCACCTACGCGGTCCG
CATGCAGGATGGCGTGGTGCAGGCGCAAATCGACACGCGCGCCAGGAGGC
ATTCGAGGCGATATACTAGAGCGCTCTCCTCGACGCCCGCGGCAAGGCCA
CCAGCGACTATTACTGAATAGGGCCGGCCAGGGAACGAGGGAGAGAGGGT
GCGGGAAGAAGGGAGAAGGAAGAGAAAGGGAAGTTCAAAGGAAGAGGGGC
TTTGGAGCG
back to top