mRNA_P-wetherbeei_contig53054.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53054.1.1
Unique NamemRNA_P-wetherbeei_contig53054.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53054.1.1 vs. uniprot
Match: UPI001FEE8B93 (copper-containing nitrite reductase n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI001FEE8B93)

HSP 1 Score: 296 bits (758), Expect = 7.030e-98
Identity = 138/173 (79.77%), Postives = 153/173 (88.44%), Query Frame = 1 
Query:    1 LKYDLAYYIGEQDFYIPRDEQGSFKKYETAGEDLSESLDVMRTLTPTHVVFNGAAGALTGDGALKAKVGDNVLFIHAQANRDTRPHLIGGHGDYVWTTGSFADVPATGRETWSVCGGSAGAAMYKFRQPGIYAYVNHNLIEAVMLGATAHVVVDGEWDDDLMMQVSKPGPISG 519
            LKYD+AYY+GEQDFYIPRDE+G+FKKYETAGEDL ESLDVMRTL P+HVVFNGA G+LTGD A+KAKVG+ +L IHAQANRDTRPHLIGGH DYVW  G FA+ P T  ETW + GGSAGAA+YKFRQPGIYAYVNHNLIEAVMLGATAH  VDG+W DDLMMQV+KP PI+G
Sbjct:  203 LKYDMAYYVGEQDFYIPRDEKGAFKKYETAGEDLPESLDVMRTLIPSHVVFNGAVGSLTGDNAMKAKVGETLLIIHAQANRDTRPHLIGGHADYVWEHGKFANAPDTDYETWFIRGGSAGAALYKFRQPGIYAYVNHNLIEAVMLGATAHFKVDGQWSDDLMMQVAKPRPITG 375
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BLAST of mRNA_P-wetherbeei_contig53054.1.1 vs. uniprot
Match: A0A847ZQB3_9HYPH (Copper-containing nitrite reductase n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZQB3_9HYPH)

HSP 1 Score: 293 bits (749), Expect = 1.900e-96
Identity = 136/171 (79.53%), Postives = 154/171 (90.06%), Query Frame = 1 
Query:    1 LKYDLAYYIGEQDFYIPRDEQGSFKKYETAGEDLSESLDVMRTLTPTHVVFNGAAGALTGDGALKAKVGDNVLFIHAQANRDTRPHLIGGHGDYVWTTGSFADVPATGRETWSVCGGSAGAAMYKFRQPGIYAYVNHNLIEAVMLGATAHVVVDGEWDDDLMMQVSKPGPI 513
            + YD AY+IGEQDFYIPRDEQG+++KYE AGE++S++L+VMR LTPTHVVFNGAAGALTGD ALKAKVG+ VLFIHAQANRD+RPHLIGGHGD+VW TGSF D PAT  ETW + GGSAGA  Y F+QPG+YAYVNHNLIEAVMLGATAHVVV+GEW+DDLMMQV KPGPI
Sbjct:  206 ITYDKAYFIGEQDFYIPRDEQGNYRKYEVAGENMSDALEVMRRLTPTHVVFNGAAGALTGDKALKAKVGERVLFIHAQANRDSRPHLIGGHGDHVWDTGSFNDAPATNLETWFIRGGSAGAMSYTFQQPGVYAYVNHNLIEAVMLGATAHVVVEGEWNDDLMMQVMKPGPI 376
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BLAST of mRNA_P-wetherbeei_contig53054.1.1 vs. uniprot
Match: A0A2W2BHQ7_9HYPH (Copper-containing nitrite reductase n=2 Tax=Bacteria TaxID=2 RepID=A0A2W2BHQ7_9HYPH)

HSP 1 Score: 279 bits (713), Expect = 6.440e-91
Identity = 131/169 (77.51%), Postives = 144/169 (85.21%), Query Frame = 1 
Query:    7 YDLAYYIGEQDFYIPRDEQGSFKKYETAGEDLSESLDVMRTLTPTHVVFNGAAGALTGDGALKAKVGDNVLFIHAQANRDTRPHLIGGHGDYVWTTGSFADVPATGRETWSVCGGSAGAAMYKFRQPGIYAYVNHNLIEAVMLGATAHVVVDGEWDDDLMMQVSKPGPI 513
            YD AY+IGEQDFYIPRD+ GSF KYE AG+D++++L+VMRTLTPTH VFNG  GALTG+GA+KAKVG+ VLFIHAQA RDTRPHLIGGHGD VW  GSF D P T  ETW + GGSAGA  Y FRQPGIYAYVNHNLIEAVMLGATAHVVV+GEWDDDLM QV KP PI
Sbjct:  215 YDRAYFIGEQDFYIPRDKDGSFVKYENAGDDMADALEVMRTLTPTHEVFNGKVGALTGEGAMKAKVGETVLFIHAQATRDTRPHLIGGHGDLVWEAGSFNDKPDTNLETWLIRGGSAGAMAYTFRQPGIYAYVNHNLIEAVMLGATAHVVVEGEWDDDLMTQVQKPAPI 383
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BLAST of mRNA_P-wetherbeei_contig53054.1.1 vs. uniprot
Match: Q2PSG3_9BACT (Putative nitrite reductase (Fragment) n=75 Tax=root TaxID=1 RepID=Q2PSG3_9BACT)

HSP 1 Score: 265 bits (678), Expect = 7.780e-89
Identity = 126/142 (88.73%), Postives = 132/142 (92.96%), Query Frame = 1 
Query:    1 LKYDLAYYIGEQDFYIPRDEQGSFKKYETAGEDLSESLDVMRTLTPTHVVFNGAAGALTGDGALKAKVGDNVLFIHAQANRDTRPHLIGGHGDYVWTTGSFADVPATGRETWSVCGGSAGAAMYKFRQPGIYAYVNHNLIEA 426
            +KYDLAYYIGEQDFYIPRD QG+FKKYETAGEDL +SLDVMRTLTPTHVVFNG AGALT D ALKAKVGDNVLFIHAQANRD+RPHLIGGHGD+VW TGSFADVPATG ETW + GGSAGA MYKFRQPGIYAYVNHNLIEA
Sbjct:   17 IKYDLAYYIGEQDFYIPRDAQGAFKKYETAGEDLPDSLDVMRTLTPTHVVFNGKAGALTADAALKAKVGDNVLFIHAQANRDSRPHLIGGHGDFVWDTGSFADVPATGLETWFIRGGSAGAMMYKFRQPGIYAYVNHNLIEA 158
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BLAST of mRNA_P-wetherbeei_contig53054.1.1 vs. uniprot
Match: A0A166BR48_9HYPH (Copper-containing nitrite reductase n=3 Tax=Pseudovibrio TaxID=258255 RepID=A0A166BR48_9HYPH)

HSP 1 Score: 273 bits (699), Expect = 1.080e-88
Identity = 124/171 (72.51%), Postives = 142/171 (83.04%), Query Frame = 1 
Query:    1 LKYDLAYYIGEQDFYIPRDEQGSFKKYETAGEDLSESLDVMRTLTPTHVVFNGAAGALTGDGALKAKVGDNVLFIHAQANRDTRPHLIGGHGDYVWTTGSFADVPATGRETWSVCGGSAGAAMYKFRQPGIYAYVNHNLIEAVMLGATAHVVVDGEWDDDLMMQVSKPGPI 513
            L YD  +Y+GEQDFYIP+DE G +K YE AG++  +   VMRTLTPTHVVFNG  GALTGD ALK+ VG   LFIHAQ+NRDTRPHLIGGHGDYVW TGSFAD PATG ETW + GGSAGAA+Y FRQPG+Y Y+NHNLIEA+ LGA +H++VDGEW+DDLM QVSKPGPI
Sbjct:  222 LSYDDVFYVGEQDFYIPKDENGDWKVYEGAGDNFGDVFPVMRTLTPTHVVFNGKVGALTGDNALKSAVGRTALFIHAQSNRDTRPHLIGGHGDYVWETGSFADTPATGLETWFIRGGSAGAALYTFRQPGVYVYLNHNLIEAIELGAASHIIVDGEWNDDLMKQVSKPGPI 392
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BLAST of mRNA_P-wetherbeei_contig53054.1.1 vs. uniprot
Match: A0A5B9GFT2_9BACT (Copper-containing nitrite reductase (Fragment) n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A5B9GFT2_9BACT)

HSP 1 Score: 261 bits (668), Expect = 2.600e-87
Identity = 123/142 (86.62%), Postives = 132/142 (92.96%), Query Frame = 1 
Query:    1 LKYDLAYYIGEQDFYIPRDEQGSFKKYETAGEDLSESLDVMRTLTPTHVVFNGAAGALTGDGALKAKVGDNVLFIHAQANRDTRPHLIGGHGDYVWTTGSFADVPATGRETWSVCGGSAGAAMYKFRQPGIYAYVNHNLIEA 426
            +KYD AYYIGEQDFYIPRDE G++KKYETAGEDLSESLDVMRTLTPTHVVFNGAAGALT +GA+KAKVG+ VLFIHAQANRD+RPHLIGGHGDYVW TGSFADVPATG ETW + GGSAGA  YKFRQPG+YAYVNHNLIEA
Sbjct:   17 IKYDRAYYIGEQDFYIPRDENGAYKKYETAGEDLSESLDVMRTLTPTHVVFNGAAGALTKEGAMKAKVGETVLFIHAQANRDSRPHLIGGHGDYVWETGSFADVPATGLETWFIRGGSAGAMTYKFRQPGVYAYVNHNLIEA 158
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BLAST of mRNA_P-wetherbeei_contig53054.1.1 vs. uniprot
Match: Q06MB4_9BACT (NirK (Fragment) n=9 Tax=uncultured bacterium TaxID=77133 RepID=Q06MB4_9BACT)

HSP 1 Score: 260 bits (665), Expect = 7.440e-87
Identity = 121/142 (85.21%), Postives = 134/142 (94.37%), Query Frame = 1 
Query:    1 LKYDLAYYIGEQDFYIPRDEQGSFKKYETAGEDLSESLDVMRTLTPTHVVFNGAAGALTGDGALKAKVGDNVLFIHAQANRDTRPHLIGGHGDYVWTTGSFADVPATGRETWSVCGGSAGAAMYKFRQPGIYAYVNHNLIEA 426
            LKYDLAYYIGEQD+YIPRDE+G+FKKYE AGE+L++ LDVMRTLTPTHVVFNGAAGALTGD ALKAKVGDNVLFIHAQANRD+RPHLIGGHGD+VW TGSFAD+PATG ETW + GGSAGA +YKF+QPG+YAYVNHNLIEA
Sbjct:   17 LKYDLAYYIGEQDYYIPRDEKGAFKKYEMAGENLTDCLDVMRTLTPTHVVFNGAAGALTGDAALKAKVGDNVLFIHAQANRDSRPHLIGGHGDFVWDTGSFADMPATGLETWFIRGGSAGAMLYKFQQPGVYAYVNHNLIEA 158
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BLAST of mRNA_P-wetherbeei_contig53054.1.1 vs. uniprot
Match: A0A1C1YS49_9HYPH (Copper-containing nitrite reductase n=1 Tax=Hoeflea olei TaxID=1480615 RepID=A0A1C1YS49_9HYPH)

HSP 1 Score: 268 bits (686), Expect = 1.410e-86
Identity = 121/172 (70.35%), Postives = 142/172 (82.56%), Query Frame = 1 
Query:    1 LKYDLAYYIGEQDFYIPRDEQGSFKKYETAGEDLSESLDVMRTLTPTHVVFNGAAGALTGDGALKAKVGDNVLFIHAQANRDTRPHLIGGHGDYVWTTGSFADVPATGRETWSVCGGSAGAAMYKFRQPGIYAYVNHNLIEAVMLGATAHVVVDGEWDDDLMMQVSKPGPIS 516
            L YD   Y+GEQD+Y+PRDE G FK YE AG+D ++S+D MR+L PTH VFNGAAGALTG+GA+KA+VG+ VL +H QANRDTRPHLIGGHGDYVW TGSF D P TG ETW + GGS+GAAMY FRQPG+YAYVNHNLIEA +LGAT H VV+GEWD+ LM QV+ P PI+
Sbjct:  234 LPYDKIVYVGEQDYYLPRDENGEFKTYEAAGDDYADSVDAMRSLVPTHSVFNGAAGALTGEGAIKARVGETVLMVHNQANRDTRPHLIGGHGDYVWETGSFGDAPQTGLETWFIRGGSSGAAMYTFRQPGVYAYVNHNLIEAALLGATGHFVVEGEWDNGLMEQVAAPRPIA 405
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BLAST of mRNA_P-wetherbeei_contig53054.1.1 vs. uniprot
Match: A0A4Q3ZIW0_9PROT (Copper-containing nitrite reductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A4Q3ZIW0_9PROT)

HSP 1 Score: 267 bits (682), Expect = 2.710e-86
Identity = 124/171 (72.51%), Postives = 140/171 (81.87%), Query Frame = 1 
Query:    1 LKYDLAYYIGEQDFYIPRDEQGSFKKYETAGEDLSESLDVMRTLTPTHVVFNGAAGALTGDGALKAKVGDNVLFIHAQANRDTRPHLIGGHGDYVWTTGSFADVPATGRETWSVCGGSAGAAMYKFRQPGIYAYVNHNLIEAVMLGATAHVVVDGEWDDDLMMQVSKPGPI 513
            LKYD  +YIGEQDFYIPRDE G+FK YE+AG+   + L+VM+TLTPTH VFNGA GALTGD ALKAKVG+ VLF+H+QANRDTRPHLIGGHGD+VW TG F + P    ETW + GG AGA +Y F QPGIYAYVNHNLIEAV LGATAHVVV+GEW+DDLM QV  P PI
Sbjct:  210 LKYDKIFYIGEQDFYIPRDEDGNFKSYESAGDAYGDMLEVMKTLTPTHEVFNGAVGALTGDNALKAKVGETVLFVHSQANRDTRPHLIGGHGDHVWNTGKFRNAPEVDLETWHIPGGCAGAMLYTFLQPGIYAYVNHNLIEAVELGATAHVVVEGEWNDDLMTQVEPPTPI 380
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BLAST of mRNA_P-wetherbeei_contig53054.1.1 vs. uniprot
Match: A0A0Q8AAM1_9HYPH (Copper-containing nitrite reductase n=5 Tax=Bacteria TaxID=2 RepID=A0A0Q8AAM1_9HYPH)

HSP 1 Score: 266 bits (681), Expect = 2.930e-86
Identity = 124/171 (72.51%), Postives = 135/171 (78.95%), Query Frame = 1 
Query:    1 LKYDLAYYIGEQDFYIPRDEQGSFKKYETAGEDLSESLDVMRTLTPTHVVFNGAAGALTGDGALKAKVGDNVLFIHAQANRDTRPHLIGGHGDYVWTTGSFADVPATGRETWSVCGGSAGAAMYKFRQPGIYAYVNHNLIEAVMLGATAHVVVDGEWDDDLMMQVSKPGPI 513
            L YD  +YIGE DFY+PRDE G +K YET GE   E+L+VMR L PTHVVFNG  GALTGD ALKAKVGD VL +HAQANRDTRPHLIGGHGDYVW  G F + PA   ETW + GGSAGAA Y F QPG+YAYVNHNLIEA  LGATAH+ V+GEWDDDLM QVS PGPI
Sbjct:  199 LTYDKLFYIGENDFYVPRDENGKYKSYETLGESYEETLNVMRGLIPTHVVFNGKVGALTGDNALKAKVGDRVLIVHAQANRDTRPHLIGGHGDYVWEQGKFNNAPAKDLETWFIRGGSAGAAFYTFLQPGVYAYVNHNLIEAAELGATAHITVEGEWDDDLMAQVSAPGPI 369
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53054.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001FEE8B937.030e-9879.77copper-containing nitrite reductase n=1 Tax=Aestua... [more]
A0A847ZQB3_9HYPH1.900e-9679.53Copper-containing nitrite reductase n=1 Tax=Phyllo... [more]
A0A2W2BHQ7_9HYPH6.440e-9177.51Copper-containing nitrite reductase n=2 Tax=Bacter... [more]
Q2PSG3_9BACT7.780e-8988.73Putative nitrite reductase (Fragment) n=75 Tax=roo... [more]
A0A166BR48_9HYPH1.080e-8872.51Copper-containing nitrite reductase n=3 Tax=Pseudo... [more]
A0A5B9GFT2_9BACT2.600e-8786.62Copper-containing nitrite reductase (Fragment) n=1... [more]
Q06MB4_9BACT7.440e-8785.21NirK (Fragment) n=9 Tax=uncultured bacterium TaxID... [more]
A0A1C1YS49_9HYPH1.410e-8670.35Copper-containing nitrite reductase n=1 Tax=Hoefle... [more]
A0A4Q3ZIW0_9PROT2.710e-8672.51Copper-containing nitrite reductase n=1 Tax=Alphap... [more]
A0A0Q8AAM1_9HYPH2.930e-8672.51Copper-containing nitrite reductase n=5 Tax=Bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53054contigP-wetherbeei_contig53054:18..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1046724.KB889851_gene2221
Preferred namenirK
PFAMsCopper-bind,Cu-oxidase,Cu-oxidase_2,Cu-oxidase_3,Cytochrome_CBB3
Model size522
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00086
KEGG koko:K00368
KEGG ReactionR00783,R00785
KEGG Pathwayko00910,ko01120,map00910,map01120
KEGG ModuleM00529
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.5e-85
EggNOG OGsCOG2132@1|root,COG2132@2|Bacteria,1MV74@1224|Proteobacteria,1RXZF@1236|Gammaproteobacteria
EC1.7.2.1
Descriptionnitrite reductase
Cds size522
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.6130087-CDS-P-wetherbeei_contig53054:17..5391683186794.6130087-CDS-P-wetherbeei_contig53054:17..539Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53054 18..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53054.1.1prot_P-wetherbeei_contig53054.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53054 18..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53054.1.1

>prot_P-wetherbeei_contig53054.1.1 ID=prot_P-wetherbeei_contig53054.1.1|Name=mRNA_P-wetherbeei_contig53054.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
LKYDLAYYIGEQDFYIPRDEQGSFKKYETAGEDLSESLDVMRTLTPTHVV
FNGAAGALTGDGALKAKVGDNVLFIHAQANRDTRPHLIGGHGDYVWTTGS
FADVPATGRETWSVCGGSAGAAMYKFRQPGIYAYVNHNLIEAVMLGATAH
VVVDGEWDDDLMMQVSKPGPISG*
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mRNA from alignment at P-wetherbeei_contig53054:18..539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53054.1.1 ID=mRNA_P-wetherbeei_contig53054.1.1|Name=mRNA_P-wetherbeei_contig53054.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig53054:18..539- (Phaeothamnion wetherbeei SAG_119_79)
CTCAAATACGACCTCGCTTACTACATTGGCGAGCAGGACTTCTACATTCC
GCGCGACGAGCAGGGCTCGTTCAAGAAATACGAGACGGCGGGCGAAGACC
TCTCTGAAAGCCTTGATGTCATGCGCACGCTGACGCCAACCCATGTGGTC
TTCAATGGCGCTGCCGGGGCGTTGACGGGCGACGGGGCTCTGAAGGCCAA
AGTCGGGGACAATGTCCTTTTCATCCATGCACAAGCCAATCGCGACACGC
GGCCCCACCTCATTGGCGGCCACGGCGACTATGTCTGGACCACCGGCTCC
TTCGCCGATGTTCCCGCAACCGGGCGTGAGACCTGGTCTGTTTGCGGTGG
GTCGGCTGGCGCCGCAATGTACAAGTTCCGCCAGCCCGGCATTTATGCCT
ACGTCAACCATAACCTCATTGAGGCTGTGATGCTGGGCGCCACCGCCCAC
GTTGTGGTTGATGGCGAATGGGATGATGACCTTATGATGCAAGTCTCCAA
GCCGGGGCCAATTAGCGGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53054:18..539-

>mRNA_P-wetherbeei_contig53054.1.1 ID=mRNA_P-wetherbeei_contig53054.1.1|Name=mRNA_P-wetherbeei_contig53054.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig53054:18..539- (Phaeothamnion wetherbeei SAG_119_79)
CTCAAATACGACCTCGCTTACTACATTGGCGAGCAGGACTTCTACATTCC
GCGCGACGAGCAGGGCTCGTTCAAGAAATACGAGACGGCGGGCGAAGACC
TCTCTGAAAGCCTTGATGTCATGCGCACGCTGACGCCAACCCATGTGGTC
TTCAATGGCGCTGCCGGGGCGTTGACGGGCGACGGGGCTCTGAAGGCCAA
AGTCGGGGACAATGTCCTTTTCATCCATGCACAAGCCAATCGCGACACGC
GGCCCCACCTCATTGGCGGCCACGGCGACTATGTCTGGACCACCGGCTCC
TTCGCCGATGTTCCCGCAACCGGGCGTGAGACCTGGTCTGTTTGCGGTGG
GTCGGCTGGCGCCGCAATGTACAAGTTCCGCCAGCCCGGCATTTATGCCT
ACGTCAACCATAACCTCATTGAGGCTGTGATGCTGGGCGCCACCGCCCAC
GTTGTGGTTGATGGCGAATGGGATGATGACCTTATGATGCAAGTCTCCAA
GCCGGGGCCAATTAGCGGGTAG
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