mRNA_P-wetherbeei_contig5271.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5271.2.1
Unique NamemRNA_P-wetherbeei_contig5271.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5271.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5271contigP-wetherbeei_contig5271:1442..2930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size641
Hectar predicted targeting categoryother localisation
Exons5
Cds size459
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5271.2.1prot_P-wetherbeei_contig5271.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5271 1442..2264 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186789.897926-CDS-P-wetherbeei_contig5271:1441..17181683186789.897926-CDS-P-wetherbeei_contig5271:1441..1718Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5271 1442..1718 +
1683186789.9070764-CDS-P-wetherbeei_contig5271:1874..19351683186789.9070764-CDS-P-wetherbeei_contig5271:1874..1935Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5271 1875..1935 +
1683186789.9160442-CDS-P-wetherbeei_contig5271:2143..22641683186789.9160442-CDS-P-wetherbeei_contig5271:2143..2264Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5271 2144..2264 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186789.925277-UTR-P-wetherbeei_contig5271:2264..22851683186789.925277-UTR-P-wetherbeei_contig5271:2264..2285Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5271 2265..2285 +
1683186789.9350657-UTR-P-wetherbeei_contig5271:2604..26531683186789.9350657-UTR-P-wetherbeei_contig5271:2604..2653Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5271 2605..2653 +
1683186789.957122-UTR-P-wetherbeei_contig5271:2820..29301683186789.957122-UTR-P-wetherbeei_contig5271:2820..2930Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5271 2821..2930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5271.2.1

>prot_P-wetherbeei_contig5271.2.1 ID=prot_P-wetherbeei_contig5271.2.1|Name=mRNA_P-wetherbeei_contig5271.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
RSVVSPTFAIRRSECFAYLSGHGVSCSTQWRIDQIASRNVFWRGSSSFPL
SRTERATYLFKPLPRNHTRRRRRCCPFVHLRTGVLRLRTARAGHRAGGAG
CRGAKVGQNAMKRGLQSDGRGLLNRCNFNAHSRRARHHNQRKLDNCHQAG
DF*
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mRNA from alignment at P-wetherbeei_contig5271:1442..2930+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5271.2.1 ID=mRNA_P-wetherbeei_contig5271.2.1|Name=mRNA_P-wetherbeei_contig5271.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1489bp|location=Sequence derived from alignment at P-wetherbeei_contig5271:1442..2930+ (Phaeothamnion wetherbeei SAG_119_79)
CGTTCAGTTGTTTCGCCGACGTTCGCTATTCGACGGTCTGAATGTTTCGC
GTATCTGTCTGGGCATGGCGTCTCCTGTTCAACGCAGTGGCGCATCGATC
AAATAGCATCACGCAATGTTTTTTGGCGAGGATCTTCCTCCTTTCCGTTA
TCGCGCACGGAGAGGGCTACCTACCTCTTCAAACCTCTTCCGAGAAATCA
TACGCGACGCCGGCGTCGGTGCTGCCCATTCGTGCACCTTCGCACGGGAG
TGTTACGACTGCGGACGGCGAGAGCTGGTGAGAAACGCGCGGATGACCTT
TGCGGTGCGTGCAAAAGAAGAGGTATACCCTCTGAATGCAACACTCTGTC
CTTTTCGTCAAAGGAGAAACCTTTCCTTGTGAGATGCAACAGAATCATTG
CTGAATTACGAGTTCTTCCCGCGTGCTTCACAGGTCATCGGGCTGGTGGA
GCGGGATGCCGAGGGGCAAAGGTCGGCCAAAACGCCATGAAAAGGCACGC
GTTCACTGGCGTCGGCAAGGGTTAACTATCACTTGGCGACATGGTGTTTG
TGGACGTCGGGACGGATTTGGGCTTCTATCAGGTGTACCGAAAACACGTG
AGAGGATAGAAAAGTCCCTCGTATTTCCCTTCCGGTAAATTCCTTCTAAA
CTGTCTTCTAAATCTTTACCGTCCTTGATCTCTCTCTGTCACAATGCTGC
AGAGGTCTTCAATCGGACGGCAGAGGTCTTCTCAATCGTTGCAATTTCAA
TGCACACTCTCGGAGAGCCCGGCACCATAACCAGCGGAAACTAGACAACT
GCCATCAAGCAGGGGACTTTTAAAGTACCCATCGCTGTCACCATGTAAGC
CACTGGTACGCGCAGCCTGCAACAGTCGCAAATGGCTGCTTCCATGAAGC
TCAGAGAATCGGTTATTTGCTGCGCACCGCCACCGTCCTTGCCATTGCGA
ATACAACGATATAGTTGCACTCCGCCACGCTTTCTATTTTCCGGTGCACC
CACCGTACCGTTTTTGCGTCTCAAAGTGAAGCGCCCCCGCCTACCACTGC
CATCATTCCCCTTTCCCTTGGAGGCCGGCCCGCCGCCCGCCCGCAGCTGG
CCGTTCTGTGCGTCTGACGTGACCTATGGCAACCTTGATTACTGCCTCCG
CGGGCACTTGCAGGTCGGATCCTTTTGGAAAACCCAGTCACCGTCGTCGG
CTCCGGCCAGAGGTGAGTGCTGCTTCCGATCAAAGGCCTGTCTCCTCAAC
CTTATAAACCAGATTGCTTCGAAAGAGGGGAACGCAGACCTATGCAATGC
CAGCAGCCCGTCAGCGCACGCATCCCCAGTTTGCCGCTTCGTCTGCCGCC
CCTTTCTCTGCTTGCCTTCCTGCCTGCAGGGCGGACCCTCCGAACACGCT
GCAGAGCGGCGGTTTCACCGGAATGTTGGTGGAGAAATACCGCACGCTTT
GGTACGACGCGCTGGGTGGTCTATCGCACGGCCGGCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5271:1442..2930+

>mRNA_P-wetherbeei_contig5271.2.1 ID=mRNA_P-wetherbeei_contig5271.2.1|Name=mRNA_P-wetherbeei_contig5271.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig5271:1442..2930+ (Phaeothamnion wetherbeei SAG_119_79)
CGTTCAGTTGTTTCGCCGACGTTCGCTATTCGACGGTCTGAATGTTTCGC
GTATCTGTCTGGGCATGGCGTCTCCTGTTCAACGCAGTGGCGCATCGATC
AAATAGCATCACGCAATGTTTTTTGGCGAGGATCTTCCTCCTTTCCGTTA
TCGCGCACGGAGAGGGCTACCTACCTCTTCAAACCTCTTCCGAGAAATCA
TACGCGACGCCGGCGTCGGTGCTGCCCATTCGTGCACCTTCGCACGGGAG
TGTTACGACTGCGGACGGCGAGAGCTGGTCATCGGGCTGGTGGAGCGGGA
TGCCGAGGGGCAAAGGTCGGCCAAAACGCCATGAAAAGAGGTCTTCAATC
GGACGGCAGAGGTCTTCTCAATCGTTGCAATTTCAATGCACACTCTCGGA
GAGCCCGGCACCATAACCAGCGGAAACTAGACAACTGCCATCAAGCAGGG
GACTTTTAA
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