mRNA_P-wetherbeei_contig52651.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig52651.1.1 vs. uniprot
Match: A0A7C4IAX5_9PROT (tRNA 2-selenouridine(34) synthase MnmH n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C4IAX5_9PROT) HSP 1 Score: 226 bits (576), Expect = 1.840e-70 Identity = 109/177 (61.58%), Postives = 134/177 (75.71%), Query Frame = 1
Query: 1 RIVCGVTGSGKSRLLRSLGTLGAQVLDLEEIARHRGSVLGSLPGEMQPSQKMFESLVRHALDTFDASRPIFVEAESKKIGALQVPDTLMARMRTSPCIRLDLDLPLRVELLKGEYAHFLADAPLLDERFDCLVPLHGRERIDQWKALSNAHAWDELVLRLLTEHYDPAYLRGMPRNY 531
R++CG TGSGKSRLL L GAQVLDLE++A+HRGSVLG LP + QPSQKMFE+ + AL FD +RP+FVE+ES+K+G ++VPD L+ RMR +PC+R++L L RV LL+ EY H AD L + DCLVPLHGRERID+WKAL WD LV RLL EHYDPAYLR + RN+
Sbjct: 147 RVLCGTTGSGKSRLLGELSRAGAQVLDLEQLAQHRGSVLGGLPAQPQPSQKMFETRIWWALRGFDPTRPVFVESESRKVGDVRVPDALIERMRAAPCLRIELPLAERVRLLRDEYPHLEADPQALFAQLDCLVPLHGRERIDRWKALVRRGQWDALVERLLIEHYDPAYLRSIRRNF 323
BLAST of mRNA_P-wetherbeei_contig52651.1.1 vs. uniprot
Match: A0A5C9BV37_9RHOO (tRNA 2-selenouridine synthase n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A5C9BV37_9RHOO) HSP 1 Score: 226 bits (575), Expect = 2.830e-70 Identity = 108/178 (60.67%), Postives = 133/178 (74.72%), Query Frame = 1
Query: 1 RIVCGVTGSGKSRLLRSLGTLGAQVLDLEEIARHRGSVLGSLPGEMQPSQKMFESLVRHALDTFDASRPIFVEAESKKIGALQVPDTLMARMRTSPCIRLDLDLPLRVELLKGEYAHFLADAPLLDERFDCLVPLHGRERIDQWKALSNAHAWDELVLRLLTEHYDPAYLRGMPRNYA 534
R+VCG TG GKSR L++L GAQVLDLE++A H GSVLG+ P QP QK+FE+ V HAL F A +P+FVE+ESKKIG L P+ L+ARMR +PC+RL D+P+RV LLK EYAHFLADA L+ + DCL+PL GRER++ WKA + A WDELV LL HYDPAY R + RNY+
Sbjct: 152 RVVCGPTGVGKSRFLKALAECGAQVLDLEDLAAHMGSVLGAYPDRPQPPQKLFETRVWHALRGFTADKPVFVESESKKIGNLHTPEPLLARMRAAPCLRLRADIPVRVTLLKEEYAHFLADAEALNRQLDCLLPLLGRERVEAWKAQARAGQWDELVADLLIHHYDPAYARSLERNYS 329
BLAST of mRNA_P-wetherbeei_contig52651.1.1 vs. uniprot
Match: A0A4R3JWM8_9PROT (tRNA 2-selenouridine synthase n=1 Tax=Sulfuritortus calidifontis TaxID=1914471 RepID=A0A4R3JWM8_9PROT) HSP 1 Score: 225 bits (574), Expect = 3.680e-70 Identity = 108/176 (61.36%), Postives = 133/176 (75.57%), Query Frame = 1
Query: 4 IVCGVTGSGKSRLLRSLGTLGAQVLDLEEIARHRGSVLGSLPGEMQPSQKMFESLVRHALDTFDASRPIFVEAESKKIGALQVPDTLMARMRTSPCIRLDLDLPLRVELLKGEYAHFLADAPLLDERFDCLVPLHGRERIDQWKALSNAHAWDELVLRLLTEHYDPAYLRGMPRNY 531
++CG TGSGKSR L +L GAQ LDLE++A H+GSVLG LP QPSQK FESL+R L FD +RP+FVE+ESKKIG L +PDTL+ARMR++ C+ L+ D+P RV LLK EYAHFLA+ LL+ + DCLV L G ERI++WK L+ A WDELV LL +HYDPAY R + RNY
Sbjct: 153 VICGRTGSGKSRFLLALREAGAQALDLEDLAAHKGSVLGGLPDRPQPSQKYFESLIRAELHDFDPARPVFVESESKKIGRLHMPDTLLARMRSAECLTLEADIPTRVALLKEEYAHFLAEPQLLNRQLDCLVDLQGHERIERWKQLALAGQWDELVAELLVDHYDPAYNRSLGRNY 328
BLAST of mRNA_P-wetherbeei_contig52651.1.1 vs. uniprot
Match: A0A0Q6SHS8_9BURK (tRNA 2-selenouridine synthase n=7 Tax=Massilia TaxID=149698 RepID=A0A0Q6SHS8_9BURK) HSP 1 Score: 225 bits (573), Expect = 4.020e-70 Identity = 112/180 (62.22%), Postives = 134/180 (74.44%), Query Frame = 1
Query: 1 RIVCGVTGSGKSRLLRSLGTLGAQVLDLEEIARHRGSVLGSLPGEMQPSQKMFESLVRHALDTFDASRPIFVEAESKKIGALQVPDTLMARMRTSPCIRLDLDLPLRVELLKGEYAHFLADAPLLDERFDCLVPLHGRERIDQWKALSNAHAWDELVLRLLTEHYDPAYLRGMPRNYAGY 540
R+VCG TGSGKSRLL +L +GAQVLDLE++A HRGSVLG LPGE QPSQKMFE+ + L FD +RP+FVE+ESKK+G L+VPD +M RMR +PCI L LD PLRV+LL +Y HF AD L+ + D LV LHGR RID W L+N ELV +LL EHYDPAYLR + RN+A Y
Sbjct: 146 RVVCGTTGSGKSRLLETLDAIGAQVLDLEQMAAHRGSVLGHLPGEPQPSQKMFETRIWDKLRRFDPARPVFVESESKKVGNLRVPDAVMDRMRAAPCIALQLDRPLRVQLLMEDYHHFCADPAALNAQLDHLVQLHGRARIDAWHDLANTGRMPELVDQLLVEHYDPAYLRSIDRNFAQY 325
BLAST of mRNA_P-wetherbeei_contig52651.1.1 vs. uniprot
Match: A0A7Y8MMW0_9PROT (tRNA 2-selenouridine(34) synthase MnmH n=1 Tax=Hydrogenophilaceae bacterium TaxID=2723029 RepID=A0A7Y8MMW0_9PROT) HSP 1 Score: 223 bits (569), Expect = 2.090e-69 Identity = 107/176 (60.80%), Postives = 133/176 (75.57%), Query Frame = 1
Query: 4 IVCGVTGSGKSRLLRSLGTLGAQVLDLEEIARHRGSVLGSLPGEMQPSQKMFESLVRHALDTFDASRPIFVEAESKKIGALQVPDTLMARMRTSPCIRLDLDLPLRVELLKGEYAHFLADAPLLDERFDCLVPLHGRERIDQWKALSNAHAWDELVLRLLTEHYDPAYLRGMPRNY 531
+VCG TGSGKSR L++L GAQVLDLE++A H+GSVLG LP QPSQK FESL+ L FDA RP+FVE+ESKKIG L PDTL+ARMR++ C+ L+ D+P+RV LLK EY HFLA+ LL+ + DCLV L G +RI++WK ++ A WDELV LL +HYDPAY R + RNY
Sbjct: 153 VVCGRTGSGKSRFLQALREAGAQVLDLEDLAAHKGSVLGGLPDRPQPSQKYFESLIWADLHGFDADRPVFVESESKKIGRLHTPDTLLARMRSAECLTLEADIPVRVALLKEEYGHFLAEPQLLNRQLDCLVDLQGHQRIERWKQMALAGQWDELVAELLVDHYDPAYNRSLSRNY 328
BLAST of mRNA_P-wetherbeei_contig52651.1.1 vs. uniprot
Match: UPI001987058F (tRNA 2-selenouridine(34) synthase MnmH n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=UPI001987058F) HSP 1 Score: 223 bits (568), Expect = 3.300e-69 Identity = 104/178 (58.43%), Postives = 137/178 (76.97%), Query Frame = 1
Query: 1 RIVCGVTGSGKSRLLRSLGTLGAQVLDLEEIARHRGSVLGSLPGEMQPSQKMFESLVRHALDTFDASRPIFVEAESKKIGALQVPDTLMARMRTSPCIRLDLDLPLRVELLKGEYAHFLADAPLLDERFDCLVPLHGRERIDQWKALSNAHAWDELVLRLLTEHYDPAYLRGMPRNYA 534
R++CG TGSGKSRLL+ L GAQVLDLEE+A+HRGSVLG LP + QPSQKMFE+ + AL TFD +RP+FVE+ES+KIG L+VP+ LM MR S C+RL++ L +RV LL+ EY HF D L+++ DCL LHG+++I QWK+L++ WD +V +LL EHYDPAYL+ + RN+A
Sbjct: 154 RVICGTTGSGKSRLLQQLAATGAQVLDLEELAQHRGSVLGGLPSQPQPSQKMFETRLWSALQTFDPARPVFVESESRKIGELRVPEGLMIAMRASECVRLEVPLEVRVRLLRDEYRHFERDLTALNDQLDCLSALHGKQKISQWKSLASDDNWDAVVEQLLVEHYDPAYLKSIDRNFA 331
BLAST of mRNA_P-wetherbeei_contig52651.1.1 vs. uniprot
Match: A0A536ZWJ3_9PROT (tRNA 2-selenouridine(34) synthase MnmH (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536ZWJ3_9PROT) HSP 1 Score: 221 bits (562), Expect = 7.680e-69 Identity = 112/176 (63.64%), Postives = 127/176 (72.16%), Query Frame = 1
Query: 4 IVCGVTGSGKSRLLRSLGTLGAQVLDLEEIARHRGSVLGSLPGEMQPSQKMFESLVRHALDTFDASRPIFVEAESKKIGALQVPDTLMARMRTSPCIRLDLDLPLRVELLKGEYAHFLADAPLLDERFDCLVPLHGRERIDQWKALSNAHAWDELVLRLLTEHYDPAYLRGMPRNY 531
+V G TGSGKSR L +LG GAQVLDLE +A HRGSVLG LPGE QPSQK FES + A++ FD +RP+FVE ESKKIG LQVPD LMARMR S CI L+ DL RV LL EY HF+AD L+ + DCL LHG+ERI QWKAL+ A W E V RLL EHYDPAY R N+
Sbjct: 135 VVHGPTGSGKSRFLAALGKAGAQVLDLEALAAHRGSVLGGLPGEPQPSQKWFESQLLAAVENFDRARPVFVEGESKKIGELQVPDALMARMRASRCITLETDLSTRVTLLLDEYRHFVADRAALEAQLDCLTALHGKERIAQWKALAAAGNWREFVTRLLIEHYDPAYRRSSMHNF 310
BLAST of mRNA_P-wetherbeei_contig52651.1.1 vs. uniprot
Match: A0A1S9AI26_9BURK (tRNA 2-selenouridine(34) synthase MnmH n=3 Tax=Massilia TaxID=149698 RepID=A0A1S9AI26_9BURK) HSP 1 Score: 221 bits (564), Expect = 9.690e-69 Identity = 112/180 (62.22%), Postives = 132/180 (73.33%), Query Frame = 1
Query: 1 RIVCGVTGSGKSRLLRSLGTLGAQVLDLEEIARHRGSVLGSLPGEMQPSQKMFESLVRHALDTFDASRPIFVEAESKKIGALQVPDTLMARMRTSPCIRLDLDLPLRVELLKGEYAHFLADAPLLDERFDCLVPLHGRERIDQWKALSNAHAWDELVLRLLTEHYDPAYLRGMPRNYAGY 540
R+VCG TGSGKSRLL +L +GAQVLDLE +A HRGSVLG LP E QP+QKMFES + L FD SRP+FVE+ESKK+G L+VPD +M RMR SPCI L+L P RV LL +Y HF AD L+ + + LV LHGRERID W AL+N A ELV +LL EHYDPAYLR + RN+ Y
Sbjct: 146 RVVCGTTGSGKSRLLETLERVGAQVLDLERLAAHRGSVLGHLPDEPQPTQKMFESQIWDKLRRFDPSRPVFVESESKKVGNLRVPDAVMERMRASPCIALELSRPNRVRLLMEDYEHFCADPAALNGQLEHLVQLHGRERIDAWHALANGGAMAELVDQLLVEHYDPAYLRSIDRNFVHY 325
BLAST of mRNA_P-wetherbeei_contig52651.1.1 vs. uniprot
Match: A0A7V9DXH5_9BURK (tRNA 2-selenouridine(34) synthase MnmH n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A7V9DXH5_9BURK) HSP 1 Score: 219 bits (559), Expect = 4.510e-68 Identity = 103/178 (57.87%), Postives = 132/178 (74.16%), Query Frame = 1
Query: 1 RIVCGVTGSGKSRLLRSLGTLGAQVLDLEEIARHRGSVLGSLPGEMQPSQKMFESLVRHALDTFDASRPIFVEAESKKIGALQVPDTLMARMRTSPCIRLDLDLPLRVELLKGEYAHFLADAPLLDERFDCLVPLHGRERIDQWKALSNAHAWDELVLRLLTEHYDPAYLRGMPRNYA 534
R++CG TGSGKSRLL+ L LGAQVLDLE +A HRGSVLG LP QPSQKMFE+ + AL FD + P+F+E+ES+KIG L++PD L+A MR S CIRL++ L R+ LL+ EY H+ D LD + DCL LHG+++I QWKAL+N WD +V RLL +HYDPAYL+ + RN+A
Sbjct: 141 RVICGTTGSGKSRLLQQLSALGAQVLDLEHLALHRGSVLGGLPSHPQPSQKMFETRLWSALRAFDPAYPVFIESESRKIGELRIPDPLLAAMRASECIRLEVPLAARIRLLREEYEHYERDRGALDSQLDCLTALHGKQKISQWKALANDDNWDGVVERLLLDHYDPAYLKSIDRNFA 318
BLAST of mRNA_P-wetherbeei_contig52651.1.1 vs. uniprot
Match: A0A258TRA6_9PROT (tRNA 2-selenouridine(34) synthase MnmH n=1 Tax=Hydrogenophilales bacterium 28-61-23 TaxID=1970530 RepID=A0A258TRA6_9PROT) HSP 1 Score: 219 bits (558), Expect = 9.750e-68 Identity = 103/179 (57.54%), Postives = 127/179 (70.95%), Query Frame = 1
Query: 1 RIVCGVTGSGKSRLLRSLGTLGAQVLDLEEIARHRGSVLGSLPGEMQPSQKMFESLVRHALDTFDASRPIFVEAESKKIGALQVPDTLMARMRTSPCIRLDLDLPLRVELLKGEYAHFLADAPLLDERFDCLVPLHGRERIDQWKALSNAHAWDELVLRLLTEHYDPAYLRGMPRNYAG 537
R++CG TG GKSR LR L AQVLDLE++A H GSVLG+ P QP+QK+FES V H L +FD RPIFVE+ESKKIG L P+ L+ RMR + CI L D+P+RVELLK EYAHFL DA L ++ DCL + G+E+++ WK L+ + WDELV LL HYDPAY R + RNY G
Sbjct: 153 RVICGPTGVGKSRFLRELKACKAQVLDLEDLAAHMGSVLGAYPARPQPAQKLFESRVWHTLQSFDPERPIFVESESKKIGNLHTPEELLKRMRAATCINLHADIPVRVELLKQEYAHFLIDAESLGQKLDCLTTIQGKEQVENWKVLARSGRWDELVAELLIRHYDPAYTRSLDRNYVG 331 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52651.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig52651.1.1 >prot_P-wetherbeei_contig52651.1.1 ID=prot_P-wetherbeei_contig52651.1.1|Name=mRNA_P-wetherbeei_contig52651.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp RIVCGVTGSGKSRLLRSLGTLGAQVLDLEEIARHRGSVLGSLPGEMQPSQback to top mRNA from alignment at P-wetherbeei_contig52651:1..540+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig52651.1.1 ID=mRNA_P-wetherbeei_contig52651.1.1|Name=mRNA_P-wetherbeei_contig52651.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig52651:1..540+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig52651:1..540+ >mRNA_P-wetherbeei_contig52651.1.1 ID=mRNA_P-wetherbeei_contig52651.1.1|Name=mRNA_P-wetherbeei_contig52651.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig52651:1..540+ (Phaeothamnion wetherbeei SAG_119_79)back to top |