mRNA_P-wetherbeei_contig52642.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52642.1.1
Unique NamemRNA_P-wetherbeei_contig52642.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52642.1.1 vs. uniprot
Match: A0A1Z9ULQ8_9GAMM (Uncharacterized protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9ULQ8_9GAMM)

HSP 1 Score: 195 bits (495), Expect = 3.290e-57
Identity = 102/167 (61.08%), Postives = 130/167 (77.84%), Query Frame = 1
Query:   43 RLLALGLPIGVSLFLQSGLFTAVAMMMGAISSAAVAAHQIALNYCGIVFMLPLGFAMALTVRVGQAVGRRDLVAVRRIAYTGFVLCGLCTVTAATTTWLFAPRIIAIYTDDPQVVAIALLLFKVGAGLQMADGLQVAAAFALRGMKDTRVPLVLNALNYWGVGFTLA 543
            RL++LGLPIG+SLFLQSGLFT VA++M ++ + AVAAHQI L+Y G+VFM+PLG AMALTV VGQAVGR D+    RI Y G V C + +  +A TT+ F P I +IYT D +V+ +++ LFK+ A LQ+ DG+QVA AFALRG+KDTRVPL+LNA+NYWG GF  A
Sbjct:  238 RLISLGLPIGMSLFLQSGLFTTVALLMASLGTVAVAAHQIVLSYSGLVFMIPLGLAMALTVCVGQAVGRGDVSGAGRIGYVGIVTCIVLSSISAITTFYFGPVIASIYTQDKEVLELSVTLFKLAALLQLGDGVQVAGAFALRGLKDTRVPLILNAINYWGFGFVAA 404          
BLAST of mRNA_P-wetherbeei_contig52642.1.1 vs. uniprot
Match: UPI001F109C81 (MATE family efflux transporter n=1 Tax=Thioalkalivibrio sp. XN8 TaxID=2712863 RepID=UPI001F109C81)

HSP 1 Score: 161 bits (407), Expect = 1.720e-44
Identity = 85/181 (46.96%), Postives = 118/181 (65.19%), Query Frame = 1
Query:    1 LWQSFERPDRAALTRLLALGLPIGVSLFLQSGLFTAVAMMMGAISSAAVAAHQIALNYCGIVFMLPLGFAMALTVRVGQAVGRRDLVAVRRIAYTGFVLCGLCTVTAATTTWLFAPRIIAIYTDDPQVVAIALLLFKVGAGLQMADGLQVAAAFALRGMKDTRVPLVLNALNYWGVGFTLA 543
            LW+ FERP       +L LGLPI  S+  ++GLF  VA++MG + +  VAAHQIA+NY   +FM+PL F  A T+RVGQA+GR +    RR  ++G  LCGL  V +AT    F  +I A YT DP+++ +A+ L  +    Q++DGLQV AA ALRG KDTRVP+++N  +YW + F +A
Sbjct:  188 LWRGFERPRWPVQREILGLGLPIAASVEAEAGLFAGVALIMGTLGATQVAAHQIAINYAATMFMVPLAFHSATTIRVGQALGRGEPRRARRAGWSGIGLCGLFMVASATVLLFFREQIAAFYTTDPELLPLAVALLSMAMIFQVSDGLQVGAAGALRGFKDTRVPMLINVASYWLIAFPMA 368          
BLAST of mRNA_P-wetherbeei_contig52642.1.1 vs. uniprot
Match: A0A0S8FIC7_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium SG8_31 TaxID=1703405 RepID=A0A0S8FIC7_9GAMM)

HSP 1 Score: 159 bits (403), Expect = 1.270e-43
Identity = 90/177 (50.85%), Postives = 117/177 (66.10%), Query Frame = 1
Query:   13 FERPDRAALTRLLALGLPIGVSLFLQSGLFTAVAMMMGAISSAAVAAHQIALNYCGIVFMLPLGFAMALTVRVGQAVGRRDLVAVRRIAYTGFVLCGLCTVTAATTTWLFAPRIIAIYTDDPQVVAIALLLFKVGAGLQMADGLQVAAAFALRGMKDTRVPLVLNALNYWGVGFTLA 543
            FE P  + L  LL LGLPIG+S+  ++GLF+AVA++MGA+ + AVAAHQIA+NY   +FM+PL    ALT+RVG  +GR D  A RRI + G  +CG+    +A    +F   I + YT DPQV  +A+ L  +G   Q+ DGLQV AA ALRG KDTRVP+VLN  +YW   F LA
Sbjct:  232 FEPPRVSVLKDLLGLGLPIGISVVSEAGLFSAVALLMGALGATAVAAHQIAINYAATMFMVPLALHSALTIRVGHTLGRGDTQAARRIGFIGIGMCGVVMAVSALVLLIFRQPIASFYTVDPQVRDLAVSLLTMGMLFQIFDGLQVGAAGALRGYKDTRVPMVLNFASYWLGAFPLA 408          
BLAST of mRNA_P-wetherbeei_contig52642.1.1 vs. uniprot
Match: A0A523NTX9_9PROT (MATE family efflux transporter n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NTX9_9PROT)

HSP 1 Score: 159 bits (402), Expect = 1.750e-43
Identity = 82/181 (45.30%), Postives = 117/181 (64.64%), Query Frame = 1
Query:    1 LWQSFERPDRAALTRLLALGLPIGVSLFLQSGLFTAVAMMMGAISSAAVAAHQIALNYCGIVFMLPLGFAMALTVRVGQAVGRRDLVAVRRIAYTGFVLCGLCTVTAATTTWLFAPRIIAIYTDDPQVVAIALLLFKVGAGLQMADGLQVAAAFALRGMKDTRVPLVLNALNYWGVGFTLA 543
            +W   E+PD   +  LL +GLPIG S  LQ+GLF+A+A+++G+  +  VAAH + LNY  ++FM+PLG  MA T  VGQA+GR    A RR+ Y G  +C L    +A  T ++A  I  +Y+ D  V+ +   L  + A +Q+ DG QV AA ALRG+KDTR+PL++NA  YW VGF++A
Sbjct:  228 IWGPIEQPDWTVMRDLLRVGLPIGGSFMLQAGLFSAMALILGSFGAVVVAAHAVTLNYASLIFMIPLGVGMATTALVGQAIGRGQPHAARRVGYVGIAMCFLLMCVSAVLTVVYAAAIARLYSQDEAVITLVTSLLFIAAIMQLGDGSQVTAAGALRGLKDTRIPLLINAFVYWIVGFSIA 408          
BLAST of mRNA_P-wetherbeei_contig52642.1.1 vs. uniprot
Match: A0A1G0I9R8_9GAMM (MATE family efflux transporter n=2 Tax=Bacteria TaxID=2 RepID=A0A1G0I9R8_9GAMM)

HSP 1 Score: 157 bits (396), Expect = 1.300e-42
Identity = 88/180 (48.89%), Postives = 115/180 (63.89%), Query Frame = 1
Query:    1 LWQSFERPDRAALTRLLALGLPIGVSLFLQSGLFTAVAMMMGAISSAAVAAHQIALNYCGIVFMLPLGFAMALTVRVGQAVGRRDLVAVRRIAYTGFVLCGLCTVTAATTTWLFAPRIIAIYTDDPQVVAIALLLFKVGAGLQMADGLQVAAAFALRGMKDTRVPLVLNALNYWGVGFTL 540
            L+  F+ PD   +  LLALGLP+GVS+F++  LF A A+++G + +  VAAHQIALN   + FMLPLG AMA TVRVG A G  D  AVR  A  GF L G+    AA         I  +YT DP V A+A+LL +  A  Q+ DG+QV ++ ALRG+KDTRVP+++  L YWG+G  L
Sbjct:  229 LFSRFDAPDWKQIGALLALGLPMGVSIFMEGSLFVATALLIGRLGAVDVAAHQIALNVASVCFMLPLGIAMATTVRVGHAAGAGDRSAVRWAAGAGFALGGVTQAVAAAILIFGGAWISGLYTSDPAVAALAVLLMRYAAVFQLPDGVQVLSSGALRGLKDTRVPMLITILAYWGIGLPL 408          
BLAST of mRNA_P-wetherbeei_contig52642.1.1 vs. uniprot
Match: A0A0S8FER4_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium SG8_31 TaxID=1703405 RepID=A0A0S8FER4_9GAMM)

HSP 1 Score: 156 bits (394), Expect = 1.710e-42
Identity = 87/181 (48.07%), Postives = 117/181 (64.64%), Query Frame = 1
Query:    1 LWQSFERPDRAALTRLLALGLPIGVSLFLQSGLFTAVAMMMGAISSAAVAAHQIALNYCGIVFMLPLGFAMALTVRVGQAVGRRDLVAVRRIAYTGFVLCGLCTVTAATTTWLFAPRIIAIYTDDPQVVAIALLLFKVGAGLQMADGLQVAAAFALRGMKDTRVPLVLNALNYWGVGFTLA 543
            L  +F+ P    L  L+ LGLPIGVS+  ++GLF+AVA++MG++ + AVAAHQIA+NY   +FM+PL F  ALT+RVG  +GR D    RRI + G  +CG+    +A     F   I + YT DP+V  +A+ L  +G   Q+ DGLQV AA ALRG KDTR+P+VLN  +YW   F LA
Sbjct:  228 LTTAFDPPRGERLKDLVGLGLPIGVSVVSEAGLFSAVALLMGSLGATAVAAHQIAINYAATMFMVPLAFHSALTIRVGHVLGRGDARTARRIGFIGIAMCGVVMTVSALVLLAFRQPIASFYTVDPEVRGLAVSLLTMGMLFQIFDGLQVGAAGALRGYKDTRIPMVLNFASYWLGAFPLA 408          
BLAST of mRNA_P-wetherbeei_contig52642.1.1 vs. uniprot
Match: A0A558DTL8_9GAMM (MATE family efflux transporter n=1 Tax=Sedimenticola selenatireducens TaxID=191960 RepID=A0A558DTL8_9GAMM)

HSP 1 Score: 154 bits (389), Expect = 1.350e-41
Identity = 87/182 (47.80%), Postives = 121/182 (66.48%), Query Frame = 1
Query:    1 LWQSFERPDRAALTRLLALGLPIGVSLFLQSGLFTAVAMMMGAISSAAVAAHQIALNYCGIVFMLPLGFAMALTVRVGQAVGRRDL-VAVRRIAYTGFVLCGLCTVTAATTTWLFAPRIIAIYTDDPQVVAIALLLFKVGAGLQMADGLQVAAAFALRGMKDTRVPLVLNALNYWGVGFTLA 543
            L+  F  P    + R+L LGLPI +++ L+ G+F+AVA++MG +    +AAHQIALNY G++FMLPL  + A+T+RVG A G  D+ +AV R  + G VL G     +AT   LF   I+A YT+DP+V A+A+ L    A  Q +DGLQVA + ALRG+KDT VP+V+N + YW VGF +A
Sbjct:  226 LFSHFHAPRSREIWRILKLGLPIAIAIILEVGMFSAVAVLMGTLGKVEMAAHQIALNYAGLMFMLPLSISQAITIRVGHAAGAGDVRLAVAR-GWLGVVLSGGIMALSATLLLLFPDVIVAFYTNDPEVTAMAISLLFAAALFQFSDGLQVAGSGALRGLKDTAVPMVINMVAYWAVGFPVA 406          
BLAST of mRNA_P-wetherbeei_contig52642.1.1 vs. uniprot
Match: T1CZ39_9ZZZZ (MATE efflux family protein n=1 Tax=mine drainage metagenome TaxID=410659 RepID=T1CZ39_9ZZZZ)

HSP 1 Score: 149 bits (376), Expect = 1.410e-41
Identity = 90/181 (49.72%), Postives = 119/181 (65.75%), Query Frame = 1
Query:    1 LWQSFERPDRAALTRLLALGLPIGVSLFLQSGLFTAVAMMMGAISSAAVAAHQIALNYCGIVFMLPLGFAMALTVRVGQAVGRRDLVAVRRIAYTGFVLCGLCTVTAATTTWLFAPRIIA-IYTDDPQVVAIALLLFKVGAGLQMADGLQVAAAFALRGMKDTRVPLVLNALNYWGVGFTL 540
            L++  E PD  AL  LL LG+P+  SL +++GLF A A+ +G + +  VA+HQIALN   + FMLPLG AMA+TVRVG AVGR D   VR   Y+G  L  L T + +T   L  P  IA IYT++P+V+A+A  L  +    Q +DG+QVA+A ALRG+KDTRVP+ + A  YW VGF L
Sbjct:   29 LFKRPEPPDLRALGALLRLGMPMAFSLLMEAGLFVAAALAIGRLGADVVASHQIALNVASVTFMLPLGLAMAITVRVGFAVGRGDTRGVRYAGYSGIALT-LLTQSFSTALMLGFPHAIAAIYTNNPRVIALAAQLLVLAGIFQFSDGIQVASAGALRGLKDTRVPMFITAFAYWVVGFPL 208          
BLAST of mRNA_P-wetherbeei_contig52642.1.1 vs. uniprot
Match: A0A7C5GQD4_9GAMM (MATE family efflux transporter n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A7C5GQD4_9GAMM)

HSP 1 Score: 153 bits (386), Expect = 3.050e-41
Identity = 88/182 (48.35%), Postives = 119/182 (65.38%), Query Frame = 1
Query:    1 LWQSFERPDRAALTRLLALGLPIGVSLFLQSGLFTAVAMMMGAISSAAVAAHQIALNYCGIVFMLPLGFAMALTVRVGQAVGRRDLVAVRRIAYTGFVLC-GLCTVTAATTTWLFAPRIIAIYTDDPQVVAIALLLFKVGAGLQMADGLQVAAAFALRGMKDTRVPLVLNALNYWGVGFTLA 543
            L++  E P  A L R+L LGLP+  S  ++ GLF AVA++MG I   AVAAHQ+A+NY  ++FM+PLG +M ++VRVGQA GR D    R   +TG V+  G   ++AA   W+   RI+AIYTDDP V   A  L  + A  Q++DGLQV+A  ALRG++DT VP+V+  + YW VG  LA
Sbjct:  226 LFRHLEAPRPAELWRMLRLGLPVAASTLMEVGLFMAVALLMGRIGGVAVAAHQVAINYAALMFMVPLGVSMGISVRVGQAAGRGDRAGERVAGWTGMVMAVGFMLLSAAVMLWV-PERIVAIYTDDPLVAETARGLLLMAALFQLSDGLQVSAVGALRGLRDTAVPMVITFVAYWLVGLPLA 406          
BLAST of mRNA_P-wetherbeei_contig52642.1.1 vs. uniprot
Match: A0A1Z8WRF5_9GAMM (Uncharacterized protein n=1 Tax=Methylococcaceae bacterium TMED69 TaxID=1986766 RepID=A0A1Z8WRF5_9GAMM)

HSP 1 Score: 153 bits (386), Expect = 3.110e-41
Identity = 76/171 (44.44%), Postives = 121/171 (70.76%), Query Frame = 1
Query:   25 DRAALTRLLALGLPIGVSLFLQSGLFTAVAMMMGAISSAAVAAHQIALNYCGIVFMLPLGFAMALTVRVGQAVGRRDLVAVRRIAYTGFVLCGLCTVTAATTTWLFAPRIIAIYTDDPQVVAIALLLFKVGAGLQMADGLQVAAAFALRGMKDTRVPLVLNALNYWGVGFT 537
            DR  L  +L LG PIG+SL LQ+GLF+ + +++G + +   +AHQI LNY G VFM+PLG +MA+TV VGQ  G+ +L + +R+A+ G +LC + ++  +  ++ +   I +IYTD P V  +A+ L ++ A +Q+ D +Q AA+FALRGMKDT++P+++N ++YW VGF+
Sbjct:  235 DRTRLRTILKLGYPIGLSLCLQTGLFSVLTLIVGRLGTIQASAHQIVLNYSGFVFMVPLGLSMAITVCVGQLAGKGELNSSKRLAFHGILLCLIISIVGSYISFFYPSLICSIYTDVPDVQKLAIPLLQIAAFVQIGDAMQTAASFALRGMKDTKIPMIMNFISYWVVGFS 405          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52642.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z9ULQ8_9GAMM3.290e-5761.08Uncharacterized protein n=3 Tax=Gammaproteobacteri... [more]
UPI001F109C811.720e-4446.96MATE family efflux transporter n=1 Tax=Thioalkaliv... [more]
A0A0S8FIC7_9GAMM1.270e-4350.85Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A523NTX9_9PROT1.750e-4345.30MATE family efflux transporter n=1 Tax=Proteobacte... [more]
A0A1G0I9R8_9GAMM1.300e-4248.89MATE family efflux transporter n=2 Tax=Bacteria Ta... [more]
A0A0S8FER4_9GAMM1.710e-4248.07Uncharacterized protein (Fragment) n=1 Tax=Gammapr... [more]
A0A558DTL8_9GAMM1.350e-4147.80MATE family efflux transporter n=1 Tax=Sedimentico... [more]
T1CZ39_9ZZZZ1.410e-4149.72MATE efflux family protein n=1 Tax=mine drainage m... [more]
A0A7C5GQD4_9GAMM3.050e-4148.35MATE family efflux transporter n=1 Tax=Thiotrichal... [more]
A0A1Z8WRF5_9GAMM3.110e-4144.44Uncharacterized protein n=1 Tax=Methylococcaceae b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52642contigP-wetherbeei_contig52642:2..544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1118153.MOY_10665
PFAMsMatE
Model size543
Max annot lvl135619|Oceanospirillales
KEGG koko:K03327
KEGG TC2.A.66.1
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.44e-38
EggNOG OGsCOG0534@1|root,COG0534@2|Bacteria,1MUAM@1224|Proteobacteria,1RP5M@1236|Gammaproteobacteria,1XHCU@135619|Oceanospirillales
DescriptionMATE efflux family protein
Cds size543
COG categoryV
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186788.5913444-CDS-P-wetherbeei_contig52642:1..5441683186788.5913444-CDS-P-wetherbeei_contig52642:1..544Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52642 2..544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52642.1.1prot_P-wetherbeei_contig52642.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52642 2..544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52642.1.1

>prot_P-wetherbeei_contig52642.1.1 ID=prot_P-wetherbeei_contig52642.1.1|Name=mRNA_P-wetherbeei_contig52642.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
LWQSFERPDRAALTRLLALGLPIGVSLFLQSGLFTAVAMMMGAISSAAVA
AHQIALNYCGIVFMLPLGFAMALTVRVGQAVGRRDLVAVRRIAYTGFVLC
GLCTVTAATTTWLFAPRIIAIYTDDPQVVAIALLLFKVGAGLQMADGLQV
AAAFALRGMKDTRVPLVLNALNYWGVGFTLA
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mRNA from alignment at P-wetherbeei_contig52642:2..544-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52642.1.1 ID=mRNA_P-wetherbeei_contig52642.1.1|Name=mRNA_P-wetherbeei_contig52642.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig52642:2..544- (Phaeothamnion wetherbeei SAG_119_79)
CTGTGGCAATCGTTCGAGCGACCCGACCGCGCGGCACTCACGCGGCTGCT CGCACTGGGCCTGCCGATAGGTGTGTCGCTGTTCCTGCAGTCGGGGCTGT TTACAGCGGTGGCGATGATGATGGGCGCGATCAGCAGCGCGGCGGTGGCG GCCCATCAGATCGCGCTCAATTACTGTGGCATCGTGTTCATGCTGCCGCT CGGCTTTGCGATGGCCTTGACGGTGCGCGTGGGTCAGGCCGTCGGTCGAC GCGATCTGGTCGCGGTGCGTCGCATTGCTTACACCGGCTTCGTATTATGT GGCCTGTGCACCGTCACGGCAGCCACCACTACCTGGCTGTTCGCACCGCG GATCATCGCCATCTATACCGATGATCCGCAGGTGGTAGCTATCGCATTGC TGCTGTTCAAGGTCGGTGCCGGATTGCAGATGGCCGATGGTCTGCAGGTC GCGGCGGCCTTTGCCTTACGCGGCATGAAGGATACGCGCGTGCCACTGGT GCTGAACGCCCTCAACTACTGGGGGGTAGGATTTACCTTGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52642:2..544-

>mRNA_P-wetherbeei_contig52642.1.1 ID=mRNA_P-wetherbeei_contig52642.1.1|Name=mRNA_P-wetherbeei_contig52642.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig52642:2..544- (Phaeothamnion wetherbeei SAG_119_79)
CTGTGGCAATCGTTCGAGCGACCCGACCGCGCGGCACTCACGCGGCTGCT
CGCACTGGGCCTGCCGATAGGTGTGTCGCTGTTCCTGCAGTCGGGGCTGT
TTACAGCGGTGGCGATGATGATGGGCGCGATCAGCAGCGCGGCGGTGGCG
GCCCATCAGATCGCGCTCAATTACTGTGGCATCGTGTTCATGCTGCCGCT
CGGCTTTGCGATGGCCTTGACGGTGCGCGTGGGTCAGGCCGTCGGTCGAC
GCGATCTGGTCGCGGTGCGTCGCATTGCTTACACCGGCTTCGTATTATGT
GGCCTGTGCACCGTCACGGCAGCCACCACTACCTGGCTGTTCGCACCGCG
GATCATCGCCATCTATACCGATGATCCGCAGGTGGTAGCTATCGCATTGC
TGCTGTTCAAGGTCGGTGCCGGATTGCAGATGGCCGATGGTCTGCAGGTC
GCGGCGGCCTTTGCCTTACGCGGCATGAAGGATACGCGCGTGCCACTGGT
GCTGAACGCCCTCAACTACTGGGGGGTAGGATTTACCTTGGCC
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