mRNA_P-wetherbeei_contig52631.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52631.1.1
Unique NamemRNA_P-wetherbeei_contig52631.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52631.1.1 vs. uniprot
Match: UPI0019917B1C (Uncharacterized protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019917B1C)

HSP 1 Score: 154 bits (390), Expect = 2.420e-47
Identity = 85/90 (94.44%), Postives = 88/90 (97.78%), Query Frame = 1
Query:    1 MSNEQHAQEIAMLRAEVEMLMSERQALLRATGAAAVFVANLDSESLPEETYVVADILAHALNDLTEDTLRDALELVQPAIESARAEQKEQ 270
            MSNEQHAQEIAMLRAEVEMLMSERQALLRATGAAAVFVANLDSESLPE+TY VADILAHALNDL+EDTLRDALELVQP IESARAEQK+Q
Sbjct:    1 MSNEQHAQEIAMLRAEVEMLMSERQALLRATGAAAVFVANLDSESLPEDTYAVADILAHALNDLSEDTLRDALELVQPTIESARAEQKQQ 90          
BLAST of mRNA_P-wetherbeei_contig52631.1.1 vs. uniprot
Match: A0A0C3MRM6_9PROT (Uncharacterized protein n=5 Tax=Nitrosospira TaxID=35798 RepID=A0A0C3MRM6_9PROT)

HSP 1 Score: 93.2 bits (230), Expect = 4.950e-23
Identity = 48/73 (65.75%), Postives = 63/73 (86.30%), Query Frame = 1
Query:   22 QEIAMLRAEVEMLMSERQALLRATGAAAVFVANLDSESLPEETYVVADILAHALNDLTEDTLRDALELVQPAI 240
            QEI+MLRAE+EML++ERQ LL+ TGAAAVF+ANLDS++LPE TY  A++L++ LNDL E+TLRDALE V+  +
Sbjct:    8 QEISMLRAEIEMLINERQGLLKTTGAAAVFIANLDSDALPEGTYEAAEMLSNCLNDLPEETLRDALEKVKAEL 80          
BLAST of mRNA_P-wetherbeei_contig52631.1.1 vs. uniprot
Match: A0A849IMN5_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A849IMN5_9BURK)

HSP 1 Score: 91.7 bits (226), Expect = 1.960e-22
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   16 HAQEIAMLRAEVEMLMSERQALLRATGAAAVFVANLDSESLPEETYVVADILAHALNDLTEDTLRDALELV 228
            H QEI+MLRAEVEMLMSER  LLR  GAAAVFVANLDSE LP E Y  A++L+  LN+++EDTL+DALE V
Sbjct:    5 HEQEISMLRAEVEMLMSERNKLLRVAGAAAVFVANLDSEKLPPEAYEAAEMLSICLNEVSEDTLQDALERV 75          
BLAST of mRNA_P-wetherbeei_contig52631.1.1 vs. uniprot
Match: UPI001BC57BFE (Uncharacterized protein n=1 Tax=Sulfuricella sp. TaxID=2099377 RepID=UPI001BC57BFE)

HSP 1 Score: 90.9 bits (224), Expect = 3.940e-22
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = 1
Query:   22 QEIAMLRAEVEMLMSERQALLRATGAAAVFVANLDSESLPEETYVVADILAHALNDLTEDTLRDALELVQPAIESA 249
            QEI MLRAEVEMLM ERQ LL+  GAAAVFVA LD + LPE+TY  AD+LA +LN+++E+TLRD+LE+V+  I  A
Sbjct:    8 QEIVMLRAEVEMLMKERQTLLKVAGAAAVFVAELDPDKLPEDTYDAADMLAESLNNVSEETLRDSLEVVKAEIVQA 83          
BLAST of mRNA_P-wetherbeei_contig52631.1.1 vs. uniprot
Match: A0A4P5UDC8_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadaceae bacterium TaxID=2026767 RepID=A0A4P5UDC8_9PROT)

HSP 1 Score: 88.2 bits (217), Expect = 4.700e-21
Identity = 45/73 (61.64%), Postives = 61/73 (83.56%), Query Frame = 1
Query:   22 QEIAMLRAEVEMLMSERQALLRATGAAAVFVANLDSESLPEETYVVADILAHALNDLTEDTLRDALELVQPAI 240
            QE++MLRAE+E+LM ERQ+LL+ATGAAA F+ANLDS +LPE  Y  A++L++ LNDL E+TLRDAL+ V+  +
Sbjct:    8 QEVSMLRAEIEILMKERQSLLKATGAAAAFIANLDSGALPEGAYEAAEMLSNCLNDLPEETLRDALDKVRAEL 80          
BLAST of mRNA_P-wetherbeei_contig52631.1.1 vs. uniprot
Match: A0A4R3Y3N5_9PROT (Uncharacterized protein n=1 Tax=Sulfurirhabdus autotrophica TaxID=1706046 RepID=A0A4R3Y3N5_9PROT)

HSP 1 Score: 85.5 bits (210), Expect = 5.920e-20
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   22 QEIAMLRAEVEMLMSERQALLRATGAAAVFVANLDSESLPEETYVVADILAHALNDLTEDTLRDALELVQPAI 240
            +EIAMLR E+EMLM ERQALLR  G+AAVF+A LD E LPEETY  A++LA  LN+ +E+T+ DAL +++ AI
Sbjct:    8 EEIAMLRGELEMLMRERQALLRIAGSAAVFIAELDPEVLPEETYEAAEMLAECLNEASEETINDALSVMKAAI 80          
BLAST of mRNA_P-wetherbeei_contig52631.1.1 vs. uniprot
Match: A0A512L450_9PROT (Uncharacterized protein n=3 Tax=Sulfuriferula TaxID=1778653 RepID=A0A512L450_9PROT)

HSP 1 Score: 85.1 bits (209), Expect = 7.750e-20
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    1 MSNEQHAQEIAMLRAEVEMLMSERQALLRATGAAAVFVANLDSESLPEETYVVADILAHALNDLTEDTLRDALELVQPAIES 246
            M N Q+ QE+AMLR EVEMLM ER  LLR TGAAA FVA +DS SL  ET   A++LA +LN L+EDTLR++LE V+  I++
Sbjct:    1 MLNTQNHQEVAMLRDEVEMLMRERDTLLRVTGAAAAFVAEIDSASLATETLQAAEMLAESLNHLSEDTLRESLEAVKAHIDA 82          
BLAST of mRNA_P-wetherbeei_contig52631.1.1 vs. uniprot
Match: A0A7Y4W5K9_9PROT (Uncharacterized protein n=1 Tax=Sulfuriferula sp. TaxID=2025307 RepID=A0A7Y4W5K9_9PROT)

HSP 1 Score: 84.7 bits (208), Expect = 1.100e-19
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   13 QHAQEIAMLRAEVEMLMSERQALLRATGAAAVFVANLDSESLPEETYVVADILAHALNDLTEDTLRDALELVQPAIESA 249
            Q  QE+AMLR EVEMLM ER +LLR +GAAAVFVA +DS  LPE +   A++LA +LN+L+EDTL+DAL  VQ  I  A
Sbjct:    3 QTQQEVAMLRNEVEMLMRERDSLLRVSGAAAVFVAEMDSAKLPETSLNAAEVLAESLNELSEDTLQDALSAVQAHIAQA 81          
BLAST of mRNA_P-wetherbeei_contig52631.1.1 vs. uniprot
Match: A0A1Y0G909_9PROT (Uncharacterized protein n=2 Tax=Sulfuriferula TaxID=1778653 RepID=A0A1Y0G909_9PROT)

HSP 1 Score: 84.3 bits (207), Expect = 1.440e-19
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 1
Query:   13 QHAQEIAMLRAEVEMLMSERQALLRATGAAAVFVANLDSESLPEETYVVADILAHALNDLTEDTLRDALELVQPAIE 243
            Q  QE++MLR E+EMLM ER  LLR +GAAAVFVA LDSE LP  T   A++LA +LN+LTEDTL+DAL  V+  I+
Sbjct:    3 QTLQEVSMLRDEIEMLMRERDGLLRVSGAAAVFVAELDSEKLPAVTLEAAEMLAESLNELTEDTLQDALNAVKAQIQ 79          
BLAST of mRNA_P-wetherbeei_contig52631.1.1 vs. uniprot
Match: A0A523HDH6_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A523HDH6_9PROT)

HSP 1 Score: 84.3 bits (207), Expect = 1.560e-19
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   22 QEIAMLRAEVEMLMSERQALLRATGAAAVFVANLDSESLPEETYVVADILAHALNDLTEDTLRDALELVQPAI 240
            QE +ML AE+E+LM+ERQ LL+ TGAAAVF+ANLD   LPE TY  A++L++ LN L+EDTLRDALE V+  +
Sbjct:    8 QETSMLHAEIEILMNERQNLLKTTGAAAVFIANLDCNKLPEGTYEAAEMLSNCLNILSEDTLRDALEKVKAEL 80          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52631.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019917B1C2.420e-4794.44Uncharacterized protein n=1 Tax=Prolixibacteraceae... [more]
A0A0C3MRM6_9PROT4.950e-2365.75Uncharacterized protein n=5 Tax=Nitrosospira TaxID... [more]
A0A849IMN5_9BURK1.960e-2270.42Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
UPI001BC57BFE3.940e-2264.47Uncharacterized protein n=1 Tax=Sulfuricella sp. T... [more]
A0A4P5UDC8_9PROT4.700e-2161.64Uncharacterized protein n=1 Tax=Nitrosomonadaceae ... [more]
A0A4R3Y3N5_9PROT5.920e-2061.64Uncharacterized protein n=1 Tax=Sulfurirhabdus aut... [more]
A0A512L450_9PROT7.750e-2059.76Uncharacterized protein n=3 Tax=Sulfuriferula TaxI... [more]
A0A7Y4W5K9_9PROT1.100e-1960.76Uncharacterized protein n=1 Tax=Sulfuriferula sp. ... [more]
A0A1Y0G909_9PROT1.440e-1961.04Uncharacterized protein n=2 Tax=Sulfuriferula TaxI... [more]
A0A523HDH6_9PROT1.560e-1961.64Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52631contigP-wetherbeei_contig52631:108..380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1288494.EBAPG3_27880
Model size273
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2e-24
EggNOG OGs2CHG9@1|root,3332K@2|Bacteria,1NCD5@1224|Proteobacteria,2VWRB@28216|Betaproteobacteria,373NM@32003|Nitrosomonadales
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186788.4138336-CDS-P-wetherbeei_contig52631:107..3801683186788.4138336-CDS-P-wetherbeei_contig52631:107..380Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52631 108..380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52631.1.1prot_P-wetherbeei_contig52631.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52631 108..380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52631.1.1

>prot_P-wetherbeei_contig52631.1.1 ID=prot_P-wetherbeei_contig52631.1.1|Name=mRNA_P-wetherbeei_contig52631.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
MSNEQHAQEIAMLRAEVEMLMSERQALLRATGAAAVFVANLDSESLPEET
YVVADILAHALNDLTEDTLRDALELVQPAIESARAEQKEQ*
back to top

mRNA from alignment at P-wetherbeei_contig52631:108..380-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52631.1.1 ID=mRNA_P-wetherbeei_contig52631.1.1|Name=mRNA_P-wetherbeei_contig52631.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig52631:108..380- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAACGAACAACACGCGCAGGAAATTGCAATGTTGCGCGCGGAGGT TGAAATGCTGATGAGTGAACGGCAGGCATTGCTGCGCGCGACCGGGGCCG CCGCCGTATTCGTCGCAAATCTCGACAGCGAATCATTGCCGGAGGAGACC TATGTGGTCGCCGATATCCTCGCGCACGCGCTCAATGATTTGACTGAAGA CACGCTGCGCGACGCGCTCGAACTGGTCCAGCCCGCCATTGAATCCGCCC GTGCAGAGCAGAAAGAGCAATAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig52631:108..380-

>mRNA_P-wetherbeei_contig52631.1.1 ID=mRNA_P-wetherbeei_contig52631.1.1|Name=mRNA_P-wetherbeei_contig52631.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig52631:108..380- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAACGAACAACACGCGCAGGAAATTGCAATGTTGCGCGCGGAGGT
TGAAATGCTGATGAGTGAACGGCAGGCATTGCTGCGCGCGACCGGGGCCG
CCGCCGTATTCGTCGCAAATCTCGACAGCGAATCATTGCCGGAGGAGACC
TATGTGGTCGCCGATATCCTCGCGCACGCGCTCAATGATTTGACTGAAGA
CACGCTGCGCGACGCGCTCGAACTGGTCCAGCCCGCCATTGAATCCGCCC
GTGCAGAGCAGAAAGAGCAATAG
back to top