mRNA_P-wetherbeei_contig5262.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5262.1.1
Unique NamemRNA_P-wetherbeei_contig5262.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: A0A8J9SFZ5_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SFZ5_PHATR)

HSP 1 Score: 90.5 bits (223), Expect = 3.700e-22
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    1 DCLQEPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
            D   EPVD   FPDY++    PMD GT+R +L   +Y+   P+ FARDMR ++NNCK+YNQHGSAIW + + M+ QF
Sbjct:   14 DIFLEPVDRNDFPDYMEIIDTPMDLGTVRSKLLSRKYQ--SPEQFARDMRKIWNNCKIYNQHGSAIWYVGDYMSKQF 88          
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: A0A836CMM2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMM2_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.740e-21
Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 DCLQEPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
            +   EPVD +MFP+Y+     PMD GT+R RL+   Y+RN PD FARD+RLV++NCKV+N+HGS+IW  A+ +A  F
Sbjct:  457 EIFMEPVDTRMFPNYLDIVDTPMDLGTVRTRLETKAYRRNWPDDFARDVRLVWHNCKVFNKHGSSIWYTADYLAKHF 533          
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: A0A1E7EUT7_9STRA (Bromodomain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUT7_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.870e-20
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1
Query:   13 EPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
            EPV++  FPDY ++   PMD GT+R +L   +Y+   P+ FARDMR ++NNCK+YN+HGSAIW +A+ M+ QF
Sbjct:   17 EPVNLDDFPDYEESIDIPMDLGTVRTKLLSKKYQM--PEQFARDMRKIWNNCKIYNRHGSAIWHVADYMSKQF 87          
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: A0A7S1BCQ2_9STRA (Hypothetical protein (Fragment) n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCQ2_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.370e-19
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   10 QEPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
            QEPVD++ FPDY+     PMD  T+R RL   +Y+   P+ FARDMR V+ NCKVYNQHGSAIW +A+ M+ QF
Sbjct:  484 QEPVDLQSFPDYLDYVETPMDLSTVRTRLANRKYQ--SPEQFARDMRKVWQNCKVYNQHGSAIWNLADFMSRQF 555          
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: A0A7S2EV94_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EV94_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.890e-19
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 1
Query:   13 EPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
            EPVD + FPDY +    PMD GT+R ++   +Y+   P++FARDMR ++NNCKVYNQHGSAIW +A+ M+ QF
Sbjct:   61 EPVDTEQFPDYEEYVDQPMDLGTVRDKIVRRKYQA--PENFARDMRRIWNNCKVYNQHGSAIWHVADYMSKQF 131          
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: A0A1Z5JSQ4_FISSO (Chromodomain-helicase-DNA-binding protein 7 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSQ4_FISSO)

HSP 1 Score: 90.1 bits (222), Expect = 2.580e-19
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    1 DCLQEPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
            D   EPVD + FPDY +   +PMD GT+R +L   +Y+   P+ FARDMR V+NNCK+YNQHGSAIW +A+ M+  F
Sbjct:  445 DIFLEPVDTEDFPDYEEVIDSPMDLGTVRSKLMSKKYQM--PEQFARDMRKVWNNCKIYNQHGSAIWHVADYMSKLF 519          
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: A0A7S3P5L3_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P5L3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.820e-19
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    1 DCLQEPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
            D   EPVD   FPDY      PMD GT+R +++  +Y+   P+ FARDMR ++NNCK+YNQHGSAIW +A+ M+ QF
Sbjct:  467 DIFLEPVDPDDFPDYDDVIDTPMDIGTVRTKMESKKYQA--PEQFARDMRKIWNNCKIYNQHGSAIWHVADYMSKQF 541          
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: D7G873_ECTSI (Chromodomain-helicase-DNA-binding protein 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G873_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 9.010e-19
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 1
Query:   13 EPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
            +PVD+  +P Y +    PMD GTI+ +L  W Y+RNDP  F RD RLVF NCKV+N+ GSAIW IA+ +  +F
Sbjct:  434 DPVDLDAYPSYEEKVDEPMDLGTIKGKLDNWEYRRNDPMGFLRDGRLVFTNCKVFNKFGSAIWYIADYLQAKF 506          
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: A0A7R9W4F0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W4F0_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.030e-18
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   10 QEPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
            QEPV    FPDY +    PMD GTIR ++   +Y+   P+ FARD+R V+NNCK+YNQHGS IW +A+  + QF
Sbjct:   49 QEPVSTTDFPDYEEYIDQPMDLGTIRTKVDNRKYQ--SPEQFARDVRKVWNNCKIYNQHGSQIWHVADFFSKQF 120          
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Match: A0A7S3V5T8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5T8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.290e-18
Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   13 EPVDVKMFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYNQHGSAIWLIANAMAMQF 231
            EPVD+  F DY++   + MD  TIR +L+  +Y+   P++FARDMR V+NNCKVYNQHGSAIW +A+ M++QF
Sbjct:  457 EPVDLNDFSDYMEYVDSAMDLSTIRTKLENRKYQ--GPENFARDMRKVWNNCKVYNQHGSAIWFVADYMSIQF 527          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5262.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J9SFZ5_PHATR3.700e-2251.95Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A836CMM2_9STRA1.740e-2153.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1E7EUT7_9STRA4.870e-2052.05Bromodomain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S1BCQ2_9STRA1.370e-1956.76Hypothetical protein (Fragment) n=2 Tax=Corethron ... [more]
A0A7S2EV94_9STRA1.890e-1954.79Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A1Z5JSQ4_FISSO2.580e-1953.25Chromodomain-helicase-DNA-binding protein 7 n=2 Ta... [more]
A0A7S3P5L3_9STRA4.820e-1951.95Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
D7G873_ECTSI9.010e-1952.05Chromodomain-helicase-DNA-binding protein 8 n=2 Ta... [more]
A0A7R9W4F0_9STRA1.030e-1851.35Hypothetical protein (Fragment) n=2 Tax=Pseudictyo... [more]
A0A7S3V5T8_9STRA2.290e-1854.79Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5262contigP-wetherbeei_contig5262:3244..3794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr7957
PFAMsBromodomain,Chromo,Helicase_C,PHD,SNF2_N,zf-HC5HC2H
Model size231
Max annot lvl2759|Eukaryota
KEGG koko:K14437
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.78e-21
EggNOG OGsCOG5076@1|root,KOG1474@2759|Eukaryota
EC3.6.4.12
Descriptionacetylation-dependent protein binding
Cds size201
COG categoryBK
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186788.3558574-CDS-P-wetherbeei_contig5262:3243..32911683186788.3558574-CDS-P-wetherbeei_contig5262:3243..3291Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5262 3244..3291 -
1683186788.3716393-CDS-P-wetherbeei_contig5262:3611..37641683186788.3716393-CDS-P-wetherbeei_contig5262:3611..3764Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5262 3612..3764 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186788.3823192-UTR-P-wetherbeei_contig5262:3764..37941683186788.3823192-UTR-P-wetherbeei_contig5262:3764..3794Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5262 3765..3794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5262.1.1prot_P-wetherbeei_contig5262.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5262 3244..3764 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5262.1.1

>prot_P-wetherbeei_contig5262.1.1 ID=prot_P-wetherbeei_contig5262.1.1|Name=mRNA_P-wetherbeei_contig5262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
MFPDYIKACPNPMDFGTIRQRLQEWRYKRNDPDSFARDMRLVFNNCKVYN
QHGSAIWLIANAMAMQF
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mRNA from alignment at P-wetherbeei_contig5262:3244..3794-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5262.1.1 ID=mRNA_P-wetherbeei_contig5262.1.1|Name=mRNA_P-wetherbeei_contig5262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=551bp|location=Sequence derived from alignment at P-wetherbeei_contig5262:3244..3794- (Phaeothamnion wetherbeei SAG_119_79)
GATTGCTTGCAGGAGCCGGTGGACGTGAAGATGTTCCCCGACTACATCAA GGCGTGCCCCAACCCAATGGACTTCGGCACCATCCGGCAGCGGCTGCAGG AATGGCGCTACAAGCGCAACGACCCGGACTCGTTCGCGCGGGACATGCGC CTCGTCTTCAACAACTGCAAGGTCTACAACCAGGTGCGTGACCGGTGTTG TGGGACGCACTTTTCTTTTCTCGCTTCTCTTATTTTCATTTTCCTTGATG ATAAAAGGCTGCCACTACCGCTGCGGCCATTGCCTCTATTTTACCGCAGC CAGTGGCTGGCGTTCTGCCGTGTGCAGGTGGTTACCGCTTCCAGTTCATT TGACCCGCTTCCATATGTTGCGCTTTTAATGTCAGTTTGCAATTCTTGCT TTCGGATTGCCCTTTTACACAGGTCGCTCCGTAACCTGTTTGCTTCGGTA CGCCGGTGTCCCTGCGCCTGTATTCTTGTCCACCAAATTCCAAATCCAAA CAGCATGGGTCGGCGATCTGGCTGATCGCCAACGCCATGGCGATGCAGTT C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5262:3244..3794-

>mRNA_P-wetherbeei_contig5262.1.1 ID=mRNA_P-wetherbeei_contig5262.1.1|Name=mRNA_P-wetherbeei_contig5262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig5262:3244..3794- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCCCCGACTACATCAAGGCGTGCCCCAACCCAATGGACTTCGGCAC
CATCCGGCAGCGGCTGCAGGAATGGCGCTACAAGCGCAACGACCCGGACT
CGTTCGCGCGGGACATGCGCCTCGTCTTCAACAACTGCAAGGTCTACAAC
CAGCATGGGTCGGCGATCTGGCTGATCGCCAACGCCATGGCGATGCAGTT
C
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