mRNA_P-wetherbeei_contig5254.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5254.3.1
Unique NamemRNA_P-wetherbeei_contig5254.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5254.3.1 vs. uniprot
Match: A0A353LN72_9PROT (Glutathione-dependent peroxiredoxin n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LN72_9PROT)

HSP 1 Score: 272 bits (696), Expect = 9.630e-92
Identity = 134/161 (83.23%), Postives = 149/161 (92.55%), Query Frame = 1
Query:    1 MTIQVGDKIPEATLMHMTEKGPAPITTAELFGGKKVVLFAVPGAFTPTCSNQHLPGFVEKSSEIKAKGVDTIACLSVNDAFVMGAWGKDRNVGDKVLMVGDGSAAFSKALGLDLDLSKMGLGVRSRRYSMLVVDGVVKQLNIEDAPAGAVKSGADTMLTQL 483
            MTI+VGDKIPE TL  MTEKGPAPI+TAELFGGKKVVLFA+PGAFTPTCSNQHLPGFV+K+ +IKAKGVDTIACLSVNDAFVMGAWGKD+NVGD VLM+ DGSAAF+K+LGL+ DL+K G+GVRS+RYSMLV DGVVKQLNIE+AP GA KSGADTML QL
Sbjct:    1 MTIKVGDKIPEGTLTQMTEKGPAPISTAELFGGKKVVLFALPGAFTPTCSNQHLPGFVQKAGDIKAKGVDTIACLSVNDAFVMGAWGKDQNVGDNVLMLADGSAAFTKSLGLEFDLTKAGMGVRSQRYSMLVDDGVVKQLNIEEAPGGAEKSGADTMLGQL 161          
BLAST of mRNA_P-wetherbeei_contig5254.3.1 vs. uniprot
Match: A0A081BAF9_9HYPH (Glutathione-dependent peroxiredoxin n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081BAF9_9HYPH)

HSP 1 Score: 233 bits (595), Expect = 2.350e-76
Identity = 112/161 (69.57%), Postives = 135/161 (83.85%), Query Frame = 1
Query:    1 MTIQVGDKIPEATLMHMTEKGPAPITTAELFGGKKVVLFAVPGAFTPTCSNQHLPGFVEKSSEIKAKGVDTIACLSVNDAFVMGAWGKDRNVGDKVLMVGDGSAAFSKALGLDLDLSKMGLGVRSRRYSMLVVDGVVKQLNIEDAPAGAVKSGADTMLTQL 483
            MTI VG+K+P+ TLM +T+KGPAP+ T+ELF GKKVV+FA+PGAFTPTCSNQHLPGF+EK+++IKAKGVDTIACLSVNDAFVMGAWGK +  GD VLM+GDG+  F+   GLD D S  G+G RS+RYSM+V DGVVKQLN+E  P  A  SGADT+L+QL
Sbjct:    1 MTIAVGEKLPDVTLMQLTDKGPAPVKTSELFAGKKVVVFALPGAFTPTCSNQHLPGFIEKAADIKAKGVDTIACLSVNDAFVMGAWGKQQGAGDAVLMLGDGNGDFAAKTGLDFDGSGFGMGRRSQRYSMIVEDGVVKQLNVEPNPGEAKVSGADTILSQL 161          
BLAST of mRNA_P-wetherbeei_contig5254.3.1 vs. uniprot
Match: A0A2A4RZ99_9HYPH (Glutathione-dependent peroxiredoxin n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A4RZ99_9HYPH)

HSP 1 Score: 227 bits (578), Expect = 9.130e-74
Identity = 108/161 (67.08%), Postives = 134/161 (83.23%), Query Frame = 1
Query:    1 MTIQVGDKIPEATLMHMTEKGPAPITTAELFGGKKVVLFAVPGAFTPTCSNQHLPGFVEKSSEIKAKGVDTIACLSVNDAFVMGAWGKDRNVGDKVLMVGDGSAAFSKALGLDLDLSKMGLGVRSRRYSMLVVDGVVKQLNIEDAPAGAVKSGADTMLTQL 483
            M+IQVGDK+P+ TLM+M+E GP PI T+ELFGGKKV++FA+PGAFTPTCSNQHLPGFVE + +++AKGVDTIACLSVNDAFVMGAWG+ +  GD V+M+GDG+  F+KA+GL  D S  G+G+RS RYSMLV DGV+K LN E  P+ A  SGA+T+L QL
Sbjct:    1 MSIQVGDKMPDVTLMYMSETGPTPIKTSELFGGKKVIIFALPGAFTPTCSNQHLPGFVENAEQLRAKGVDTIACLSVNDAFVMGAWGEQQKAGDDVMMLGDGNGDFTKAVGLSFDGSGFGMGIRSLRYSMLVEDGVLKALNQEPNPSEAKVSGAETILAQL 161          
BLAST of mRNA_P-wetherbeei_contig5254.3.1 vs. uniprot
Match: A0A3C0TTL4_9PROT (Glutathione-dependent peroxiredoxin (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TTL4_9PROT)

HSP 1 Score: 224 bits (572), Expect = 2.130e-73
Identity = 113/123 (91.87%), Postives = 118/123 (95.93%), Query Frame = 1
Query:  115 FAVPGAFTPTCSNQHLPGFVEKSSEIKAKGVDTIACLSVNDAFVMGAWGKDRNVGDKVLMVGDGSAAFSKALGLDLDLSKMGLGVRSRRYSMLVVDGVVKQLNIEDAPAGAVKSGADTMLTQL 483
            FAVPGAFTPTCSNQHLPGFVEK+ EIKAKGVDTIAC+SVNDAFVMGAWGKDRNVGDKVLM+GDGSAAFSKALGLDLDLSKMGLGVRSRRYSMLV +GVVKQLNIE+APAGA KSGA TML QL
Sbjct:    1 FAVPGAFTPTCSNQHLPGFVEKAGEIKAKGVDTIACVSVNDAFVMGAWGKDRNVGDKVLMLGDGSAAFSKALGLDLDLSKMGLGVRSRRYSMLVDNGVVKQLNIEEAPAGAEKSGAATMLQQL 123          
BLAST of mRNA_P-wetherbeei_contig5254.3.1 vs. uniprot
Match: A0A2N3DZS1_9PROT (Glutathione-dependent peroxiredoxin n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3DZS1_9PROT)

HSP 1 Score: 226 bits (575), Expect = 2.610e-73
Identity = 110/161 (68.32%), Postives = 131/161 (81.37%), Query Frame = 1
Query:    1 MTIQVGDKIPEATLMHMTEKGPAPITTAELFGGKKVVLFAVPGAFTPTCSNQHLPGFVEKSSEIKAKGVDTIACLSVNDAFVMGAWGKDRNVGDKVLMVGDGSAAFSKALGLDLDLSKMGLGVRSRRYSMLVVDGVVKQLNIEDAPAGAVKSGADTMLTQL 483
            MTI+VGDKIP+ATLM +T+KGPAP+ T+E FGG+KVV+FA+PGAFTPTCSNQHLPGF++ + +IKAKGVD I CLSVNDAFVMGAWGK +  GD V M+GDG+  F+KALGLD D S  G+G RS+RYSMLV DGVVK LN E  P  A  SGA+ +L QL
Sbjct:    1 MTIKVGDKIPQATLMKLTDKGPAPVKTSEFFGGRKVVVFALPGAFTPTCSNQHLPGFIKNAGDIKAKGVDEIVCLSVNDAFVMGAWGKAQGAGDNVTMLGDGNGDFTKALGLDFDGSGFGMGTRSQRYSMLVDDGVVKSLNKEPNPGEAKVSGAEHILEQL 161          
BLAST of mRNA_P-wetherbeei_contig5254.3.1 vs. uniprot
Match: A0A6N6VKJ2_9HYPH (Glutathione-dependent peroxiredoxin n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VKJ2_9HYPH)

HSP 1 Score: 224 bits (572), Expect = 7.480e-73
Identity = 110/161 (68.32%), Postives = 128/161 (79.50%), Query Frame = 1
Query:    1 MTIQVGDKIPEATLMHMTEKGPAPITTAELFGGKKVVLFAVPGAFTPTCSNQHLPGFVEKSSEIKAKGVDTIACLSVNDAFVMGAWGKDRNVGDKVLMVGDGSAAFSKALGLDLDLSKMGLGVRSRRYSMLVVDGVVKQLNIEDAPAGAVKSGADTMLTQL 483
            MTI VG+KIP+ TLM +TEKGP P+ TA+LF G+KVV+FA+PGAFTPTCSNQHLPGF++K+ EIKAKGVD I CLSVNDAFVMGAWGK +  GDKV M+GDG+   +K LGLD D S  G+G RS RYSMLV DGVVK LN E  P  A  SGAD +LTQ+
Sbjct:    1 MTINVGEKIPDVTLMKLTEKGPVPVKTADLFKGRKVVVFALPGAFTPTCSNQHLPGFIQKADEIKAKGVDEIVCLSVNDAFVMGAWGKAQGTGDKVTMLGDGNGELTKKLGLDFDGSGFGMGTRSLRYSMLVDDGVVKSLNKEPNPGEAKVSGADNILTQI 161          
BLAST of mRNA_P-wetherbeei_contig5254.3.1 vs. uniprot
Match: A0A2Z4UFG6_9HYPH (Glutathione-dependent peroxiredoxin n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2Z4UFG6_9HYPH)

HSP 1 Score: 223 bits (568), Expect = 3.040e-72
Identity = 108/159 (67.92%), Postives = 130/159 (81.76%), Query Frame = 1
Query:    1 MTIQVGDKIPEATLMHMTEKGPAPITTAELFGGKKVVLFAVPGAFTPTCSNQHLPGFVEKSSEIKAKGVDTIACLSVNDAFVMGAWGKDRNVGDKVLMVGDGSAAFSKALGLDLDLSKMGLGVRSRRYSMLVVDGVVKQLNIEDAPAGAVKSGADTMLT 477
            MTI+VGDK+P+ATLMHMT+KGP P+ T+ELF GKKVVLFA+PGAFTPTCSNQHLPGFV+K+ ++ +KGVD IACLSVNDAFVM AWGK +   DKVLM+GDG+  F++A+GL  D S  G+G RS RYSML+ DGV+K LN E+ P  A  SGAD MLT
Sbjct:    1 MTIKVGDKLPDATLMHMTDKGPTPVKTSELFAGKKVVLFALPGAFTPTCSNQHLPGFVQKAGDLGSKGVDLIACLSVNDAFVMDAWGKTQGADDKVLMLGDGNGDFTEAVGLGFDGSGFGMGTRSLRYSMLIEDGVLKSLNQEENPGEAKVSGADHMLT 159          
BLAST of mRNA_P-wetherbeei_contig5254.3.1 vs. uniprot
Match: A0A2N3E456_9PROT (Glutathione-dependent peroxiredoxin n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11 TaxID=2013657 RepID=A0A2N3E456_9PROT)

HSP 1 Score: 223 bits (568), Expect = 3.040e-72
Identity = 109/161 (67.70%), Postives = 131/161 (81.37%), Query Frame = 1
Query:    1 MTIQVGDKIPEATLMHMTEKGPAPITTAELFGGKKVVLFAVPGAFTPTCSNQHLPGFVEKSSEIKAKGVDTIACLSVNDAFVMGAWGKDRNVGDKVLMVGDGSAAFSKALGLDLDLSKMGLGVRSRRYSMLVVDGVVKQLNIEDAPAGAVKSGADTMLTQL 483
            MTI+VGD+IP+ATLM +T+KGPAP+ T+E F G+KVV+FA+PGAFTPTCSNQHLPGF++ +  IKAKGVD IACLSVNDAFVMGAWGK +  G KV M+GDG+  F+KALGL  D S  G+G+RS+RYSMLV DGVVK LN+E A   A  SGA+ ML QL
Sbjct:    1 MTIEVGDRIPDATLMQLTDKGPAPLKTSEYFAGRKVVVFALPGAFTPTCSNQHLPGFIQNADTIKAKGVDEIACLSVNDAFVMGAWGKAQGAGGKVTMLGDGNGDFTKALGLGFDGSGFGMGMRSQRYSMLVEDGVVKSLNMEPAGGKAEVSGAENMLKQL 161          
BLAST of mRNA_P-wetherbeei_contig5254.3.1 vs. uniprot
Match: A0A2A5ELL9_9HYPH (Glutathione-dependent peroxiredoxin n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5ELL9_9HYPH)

HSP 1 Score: 222 bits (565), Expect = 8.710e-72
Identity = 106/161 (65.84%), Postives = 132/161 (81.99%), Query Frame = 1
Query:    1 MTIQVGDKIPEATLMHMTEKGPAPITTAELFGGKKVVLFAVPGAFTPTCSNQHLPGFVEKSSEIKAKGVDTIACLSVNDAFVMGAWGKDRNVGDKVLMVGDGSAAFSKALGLDLDLSKMGLGVRSRRYSMLVVDGVVKQLNIEDAPAGAVKSGADTMLTQL 483
            MTI+VG+K+P+ TLMHMT+KGP P+ T+ELF GKKVVLFA+PGAFTPTCSNQHLPGF++K+ ++++KGVD IACLSVNDAFVM AWGK +  GD VLM+GDG+  F+KA+GL  D S  G+G RS RYSML+ DGVVK+LN E  P  A  SGA+ ML+Q+
Sbjct:    1 MTIKVGEKLPDVTLMHMTDKGPTPVKTSELFAGKKVVLFALPGAFTPTCSNQHLPGFIQKAGDLQSKGVDLIACLSVNDAFVMDAWGKAQGAGDTVLMLGDGNGDFTKAVGLGFDGSGFGMGTRSLRYSMLIDDGVVKELNQEANPGEAKLSGAEHMLSQV 161          
BLAST of mRNA_P-wetherbeei_contig5254.3.1 vs. uniprot
Match: A0A2D7FN24_9HYPH (Glutathione-dependent peroxiredoxin n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2D7FN24_9HYPH)

HSP 1 Score: 222 bits (565), Expect = 9.000e-72
Identity = 106/161 (65.84%), Postives = 132/161 (81.99%), Query Frame = 1
Query:    1 MTIQVGDKIPEATLMHMTEKGPAPITTAELFGGKKVVLFAVPGAFTPTCSNQHLPGFVEKSSEIKAKGVDTIACLSVNDAFVMGAWGKDRNVGDKVLMVGDGSAAFSKALGLDLDLSKMGLGVRSRRYSMLVVDGVVKQLNIEDAPAGAVKSGADTMLTQL 483
            MTI+ GDK+P+ATLMH+T+ GPAPI+T ELFGGK V +FAVPGAFTPTCSNQHLPGF+EKS E++A GVDTI CLSVNDAFVMGAWG+ + V  KV+MV DG+A  ++ +GL +D S  G+G RS RYSM+V DGV++ LNIE+ P  AV SGA+ +L+QL
Sbjct:    1 MTIKSGDKLPDATLMHLTDAGPAPISTEELFGGKTVAMFAVPGAFTPTCSNQHLPGFIEKSEELRAAGVDTIVCLSVNDAFVMGAWGQQQGVAGKVMMVADGNAELTQKMGLAMDGSGHGMGTRSLRYSMIVRDGVMETLNIEENPGKAVDSGAENLLSQL 161          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5254.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A353LN72_9PROT9.630e-9283.23Glutathione-dependent peroxiredoxin n=3 Tax=Alphap... [more]
A0A081BAF9_9HYPH2.350e-7669.57Glutathione-dependent peroxiredoxin n=1 Tax=Tepidi... [more]
A0A2A4RZ99_9HYPH9.130e-7467.08Glutathione-dependent peroxiredoxin n=1 Tax=Rhodob... [more]
A0A3C0TTL4_9PROT2.130e-7391.87Glutathione-dependent peroxiredoxin (Fragment) n=1... [more]
A0A2N3DZS1_9PROT2.610e-7368.32Glutathione-dependent peroxiredoxin n=1 Tax=Alphap... [more]
A0A6N6VKJ2_9HYPH7.480e-7368.32Glutathione-dependent peroxiredoxin n=1 Tax=Parvib... [more]
A0A2Z4UFG6_9HYPH3.040e-7267.92Glutathione-dependent peroxiredoxin n=4 Tax=Alphap... [more]
A0A2N3E456_9PROT3.040e-7267.70Glutathione-dependent peroxiredoxin n=1 Tax=Alphap... [more]
A0A2A5ELL9_9HYPH8.710e-7265.84Glutathione-dependent peroxiredoxin n=1 Tax=Rhodob... [more]
A0A2D7FN24_9HYPH9.000e-7265.84Glutathione-dependent peroxiredoxin n=2 Tax=Hyphom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5254contigP-wetherbeei_contig5254:2835..3320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1333998.M2A_1526
Preferred nameMA20_20905
PFAMsRedoxin
Model size486
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03386
KEGG Pathwayko04214,map04214
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.86e-77
EggNOG OGsCOG0678@1|root,COG0678@2|Bacteria,1MU0H@1224|Proteobacteria,2U6ZN@28211|Alphaproteobacteria,4BQD1@82117|unclassified Alphaproteobacteria
EC1.11.1.15
DescriptionRedoxin
Cds size486
COG categoryO
BRITEko00000,ko00001,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186787.132276-CDS-P-wetherbeei_contig5254:2834..33201683186787.132276-CDS-P-wetherbeei_contig5254:2834..3320Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5254 2835..3320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5254.3.1prot_P-wetherbeei_contig5254.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5254 2835..3320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5254.3.1

>prot_P-wetherbeei_contig5254.3.1 ID=prot_P-wetherbeei_contig5254.3.1|Name=mRNA_P-wetherbeei_contig5254.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
MTIQVGDKIPEATLMHMTEKGPAPITTAELFGGKKVVLFAVPGAFTPTCS
NQHLPGFVEKSSEIKAKGVDTIACLSVNDAFVMGAWGKDRNVGDKVLMVG
DGSAAFSKALGLDLDLSKMGLGVRSRRYSMLVVDGVVKQLNIEDAPAGAV
KSGADTMLTQL*
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mRNA from alignment at P-wetherbeei_contig5254:2835..3320+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5254.3.1 ID=mRNA_P-wetherbeei_contig5254.3.1|Name=mRNA_P-wetherbeei_contig5254.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig5254:2835..3320+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCATCCAAGTAGGTGACAAGATACCTGAAGCTACTCTGATGCATAT GACCGAAAAAGGACCAGCGCCGATTACAACCGCAGAATTGTTCGGTGGCA AGAAAGTGGTGCTATTCGCGGTTCCGGGTGCGTTTACGCCCACCTGCTCC AACCAGCATCTCCCCGGATTTGTTGAAAAATCCAGTGAAATCAAAGCCAA GGGCGTTGACACCATCGCCTGCCTGTCGGTTAATGACGCTTTCGTCATGG GCGCCTGGGGCAAGGACCGCAATGTCGGTGATAAGGTTCTGATGGTGGGT GACGGCAGTGCGGCTTTCAGCAAGGCGCTGGGGCTTGATCTGGACCTCTC CAAAATGGGGCTGGGCGTGCGTTCCAGGCGTTATTCCATGCTGGTGGTCG ATGGCGTTGTTAAACAGTTGAACATCGAAGATGCTCCGGCGGGCGCTGTA AAAAGCGGCGCGGACACCATGTTGACACAACTATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5254:2835..3320+

>mRNA_P-wetherbeei_contig5254.3.1 ID=mRNA_P-wetherbeei_contig5254.3.1|Name=mRNA_P-wetherbeei_contig5254.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig5254:2835..3320+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCATCCAAGTAGGTGACAAGATACCTGAAGCTACTCTGATGCATAT
GACCGAAAAAGGACCAGCGCCGATTACAACCGCAGAATTGTTCGGTGGCA
AGAAAGTGGTGCTATTCGCGGTTCCGGGTGCGTTTACGCCCACCTGCTCC
AACCAGCATCTCCCCGGATTTGTTGAAAAATCCAGTGAAATCAAAGCCAA
GGGCGTTGACACCATCGCCTGCCTGTCGGTTAATGACGCTTTCGTCATGG
GCGCCTGGGGCAAGGACCGCAATGTCGGTGATAAGGTTCTGATGGTGGGT
GACGGCAGTGCGGCTTTCAGCAAGGCGCTGGGGCTTGATCTGGACCTCTC
CAAAATGGGGCTGGGCGTGCGTTCCAGGCGTTATTCCATGCTGGTGGTCG
ATGGCGTTGTTAAACAGTTGAACATCGAAGATGCTCCGGCGGGCGCTGTA
AAAAGCGGCGCGGACACCATGTTGACACAACTATAA
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