mRNA_P-wetherbeei_contig52534.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig52534.1.1 vs. uniprot
Match: UPI0019A2DB1D (ATP-dependent RNA helicase HrpA n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019A2DB1D) HSP 1 Score: 328 bits (841), Expect = 5.510e-102 Identity = 160/178 (89.89%), Postives = 170/178 (95.51%), Query Frame = 1
Query: 1 GNIGFKSEEAGIYLGARQIKFVLSPASGLKKKGPKWVMAAELTETTRLYARCVAAIEPEWIERLGTHLAKRSYREPHWSKDSGSVVAYEQVSVYGLVVVQKRRVQYGPIDAKASRELFIRGALVAGHYPGQADFLEYNRSLIEDVQQLEHKSRRHDVLVDDEAIFAFYAERIPDGLYS 534
GNIGFKS+EAGIYLGARQIKFVLSP S LKKKGPKWVMAAELTETTRLYARCVAAIEPEWIERLG HLAKR+YREPHWSKDSGSVVAYEQVS+YGLVVVQKRRVQYGPI+ K +RELFIRGALVAGHY G+A+FLE+NR LIEDVQQLEHKSRRHDVLVDDEAIFAFYAE IP+G+YS
Sbjct: 613 GNIGFKSDEAGIYLGARQIKFVLSPGSSLKKKGPKWVMAAELTETTRLYARCVAAIEPEWIERLGGHLAKRTYREPHWSKDSGSVVAYEQVSIYGLVVVQKRRVQYGPIEPKEARELFIRGALVAGHYSGRAEFLEHNRGLIEDVQQLEHKSRRHDVLVDDEAIFAFYAEHIPEGIYS 790
BLAST of mRNA_P-wetherbeei_contig52534.1.1 vs. uniprot
Match: A0A2W5F6E9_9RHOO (ATP-dependent helicase (Fragment) n=1 Tax=Azospira oryzae TaxID=146939 RepID=A0A2W5F6E9_9RHOO) HSP 1 Score: 236 bits (601), Expect = 1.030e-73 Identity = 112/178 (62.92%), Postives = 141/178 (79.21%), Query Frame = 1
Query: 1 GNIGFKSEEAGIYLGARQIKFVLSPASGLKKKGPKWVMAAELTETTRLYARCVAAIEPEWIERLGTHLAKRSYREPHWSKDSGSVVAYEQVSVYGLVVVQKRRVQYGPIDAKASRELFIRGALVAGHYPGQADFLEYNRSLIEDVQQLEHKSRRHDVLVDDEAIFAFYAERIPDGLYS 534
GN+G KSEEAG Y GAR IKF++ PASGL++K PKW++AAELTETTRLYARCVAAIEP WIE++ HL KRSY EP W K S VVA+EQVS++GL+VV +RRV YGPID K SRE+FIR ALVAG + + +F +N L ++++ LEHKSRR DVLVD+E +FAF+ R+P +Y+
Sbjct: 148 GNVGMKSEEAGEYQGARGIKFLIHPASGLRRKAPKWIVAAELTETTRLYARCVAAIEPAWIEQVAGHLVKRSYFEPRWEKGSAQVVAWEQVSLHGLIVVPRRRVHYGPIDPKTSREIFIRQALVAGDFECKGEFFRHNARLRKEIEALEHKSRRQDVLVDEERMFAFFDARVPPDVYN 325
BLAST of mRNA_P-wetherbeei_contig52534.1.1 vs. uniprot
Match: A0A5C7EXB8_9PROT (ATP-dependent RNA helicase HrpA n=1 Tax=Pelomicrobium methylotrophicum TaxID=2602750 RepID=A0A5C7EXB8_9PROT) HSP 1 Score: 233 bits (593), Expect = 1.330e-67 Identity = 110/178 (61.80%), Postives = 140/178 (78.65%), Query Frame = 1
Query: 1 GNIGFKSEEAGIYLGARQIKFVLSPASGLKKKGPKWVMAAELTETTRLYARCVAAIEPEWIERLGTHLAKRSYREPHWSKDSGSVVAYEQVSVYGLVVVQKRRVQYGPIDAKASRELFIRGALVAGHYPGQADFLEYNRSLIEDVQQLEHKSRRHDVLVDDEAIFAFYAERIPDGLYS 534
GN+G KSEE G Y GAR IKF++ PASGL++K PKW++AAELTETTRLYARCVAAIEP WIE++ HL KRSY EP W K + VVA+EQVS++GL+VV +RRV YGPID K SRE+FIR ALVAG + + +F +N L ++++ LEHKSRR DVLVD+E +FAF+ R+P +Y+
Sbjct: 628 GNVGMKSEEPGEYQGARGIKFLIHPASGLRRKAPKWIVAAELTETTRLYARCVAAIEPAWIEQVAGHLVKRSYFEPRWEKGTAQVVAWEQVSLHGLIVVPRRRVHYGPIDPKTSREIFIRQALVAGDFECKGEFFRHNARLRKEIEALEHKSRRQDVLVDEERMFAFFDARVPPDVYN 805
BLAST of mRNA_P-wetherbeei_contig52534.1.1 vs. uniprot
Match: A0A317GUY9_9PROT (ATP-dependent RNA helicase HrpA (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A317GUY9_9PROT) HSP 1 Score: 228 bits (581), Expect = 6.770e-67 Identity = 110/178 (61.80%), Postives = 138/178 (77.53%), Query Frame = 1
Query: 1 GNIGFKSEEAGIYLGARQIKFVLSPASGLKKKGPKWVMAAELTETTRLYARCVAAIEPEWIERLGTHLAKRSYREPHWSKDSGSVVAYEQVSVYGLVVVQKRRVQYGPIDAKASRELFIRGALVAGHYPGQADFLEYNRSLIEDVQQLEHKSRRHDVLVDDEAIFAFYAERIPDGLYS 534
GNIG KS+E GIY GAR IKF + P S L+KK P WV+AAELTETTRLYAR VAAI+P W+ER+G HLAKR+Y + HW K +A+E+V++YGLVVV KRRV +G ID +A+RE+FIR LV G Y +A FL +N+ L E+V++LEHKSRRHDVLVD+ IFAFY ER+P ++S
Sbjct: 612 GNIGTKSDEPGIYFGARGIKFSIFPGSALRKKAPPWVVAAELTETTRLYARSVAAIDPAWLERIGQHLAKRTYHDVHWEKQPAQAMAFERVTMYGLVVVPKRRVAFGRIDPRAAREIFIRDGLVHGLYDTKAVFLRHNQELREEVEELEHKSRRHDVLVDESRIFAFYDERVPQDVWS 789
BLAST of mRNA_P-wetherbeei_contig52534.1.1 vs. uniprot
Match: A0A7C2YNH0_9PROT (ATP-dependent RNA helicase HrpA n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2YNH0_9PROT) HSP 1 Score: 228 bits (581), Expect = 5.440e-66 Identity = 110/176 (62.50%), Postives = 137/176 (77.84%), Query Frame = 1
Query: 1 GNIGFKSEEAGIYLGARQIKFVLSPASGLKKKGPKWVMAAELTETTRLYARCVAAIEPEWIERLGTHLAKRSYREPHWSKDSGSVVAYEQVSVYGLVVVQKRRVQYGPIDAKASRELFIRGALVAGHYPGQADFLEYNRSLIEDVQQLEHKSRRHDVLVDDEAIFAFYAERIPDGL 528
GNIGF++EE G YLGAR I+F L P SGL+K PKWVMAAEL ET RLYAR VA IEPEWIE L HL +R Y +PHW ++ VVA+E+V++YGL +V +RRV YGP++ +RE+FIR ALVAG Y +A F E+NR L+ +VQ LEHK+RR DVLV++EAIFAFY ERIP+G+
Sbjct: 596 GNIGFRNEE-GEYLGARGIRFALFPGSGLRKSQPKWVMAAELVETARLYARTVARIEPEWIEPLARHLVQRHYHDPHWERERAMVVAFERVTLYGLTIVARRRVHYGPVNPAEAREIFIRQALVAGEYETRATFFEHNRRLVREVQALEHKARRRDVLVNEEAIFAFYDERIPEGI 770
BLAST of mRNA_P-wetherbeei_contig52534.1.1 vs. uniprot
Match: A0A837WZT7_NITER (HrpA-like helicase n=3 Tax=Nitrosomonas TaxID=914 RepID=A0A837WZT7_NITER) HSP 1 Score: 225 bits (573), Expect = 6.490e-65 Identity = 104/178 (58.43%), Postives = 135/178 (75.84%), Query Frame = 1
Query: 1 GNIGFKSEEAGIYLGARQIKFVLSPASGLKKKGPKWVMAAELTETTRLYARCVAAIEPEWIERLGTHLAKRSYREPHWSKDSGSVVAYEQVSVYGLVVVQKRRVQYGPIDAKASRELFIRGALVAGHYPGQADFLEYNRSLIEDVQQLEHKSRRHDVLVDDEAIFAFYAERIPDGLYS 534
GNIGFKS+E G+Y GAR IKF + P S L+KK PKWV+AAEL ETT+LYARC AAI+P W+ER+ L KR Y +PHW K +A+E+V++YGL ++ KRRV YGPID +RE+FIR ALVAG Y A FL++N+ LI+++++LE K RR D+LVD++ IF FYA RIP G+YS
Sbjct: 578 GNIGFKSDEKGVYEGARAIKFSIFPGSSLRKKQPKWVVAAELAETTKLYARCAAAIDPAWLERIAGKLCKRHYFDPHWEKQRAQAMAFERVTLYGLTIIPKRRVAYGPIDPAHAREIFIRQALVAGEYESTAPFLQHNQQLIDEIRELESKVRRQDILVDEQQIFEFYAARIPAGIYS 755
BLAST of mRNA_P-wetherbeei_contig52534.1.1 vs. uniprot
Match: A0A8H8Z1T0_9PROT (ATP-dependent RNA helicase HrpA n=4 Tax=Nitrosomonas nitrosa TaxID=52442 RepID=A0A8H8Z1T0_9PROT) HSP 1 Score: 223 bits (567), Expect = 4.240e-64 Identity = 107/177 (60.45%), Postives = 133/177 (75.14%), Query Frame = 1
Query: 1 GNIGFKSEEAGIYLGARQIKFVLSPASGLKKKGPKWVMAAELTETTRLYARCVAAIEPEWIERLGTHLAKRSYREPHWSKDSGSVVAYEQVSVYGLVVVQKRRVQYGPIDAKASRELFIRGALVAGHYPGQADFLEYNRSLIEDVQQLEHKSRRHDVLVDDEAIFAFYAERIPDGLY 531
GNIGFK+E G YLGAR IKF + P S LKK PKW++AAELTETT+LYARC AAIEP W+E + L K+ Y +PHW K S VVAYE+V++YGL +V KRRV YG I+ K +RE+FIR ALVAG Y +A F E+NR LI D+++LEHK+RR DVLVD++ IFAFY +P +Y
Sbjct: 582 GNIGFKTENEGEYLGARGIKFSIFPGSTLKKVKPKWIVAAELTETTKLYARCAAAIEPAWLECIAGRLCKKHYFDPHWEKQSAQVVAYERVTLYGLTIVPKRRVSYGRINPKEAREIFIRNALVAGDYVTKAPFFEHNRRLIADIEELEHKARRQDVLVDEQEIFAFYDAIVPAAIY 758
BLAST of mRNA_P-wetherbeei_contig52534.1.1 vs. uniprot
Match: A0A2M6XVP1_9PROT (ATP-dependent helicase (Fragment) n=1 Tax=Gallionellales bacterium CG08_land_8_20_14_0_20_59_87 TaxID=1974018 RepID=A0A2M6XVP1_9PROT) HSP 1 Score: 213 bits (541), Expect = 5.770e-64 Identity = 101/178 (56.74%), Postives = 133/178 (74.72%), Query Frame = 1
Query: 1 GNIGFKSEEAGIYLGARQIKFVLSPASGLKKKGPKWVMAAELTETTRLYARCVAAIEPEWIERLGTHLAKRSYREPHWSKDSGSVVAYEQVSVYGLVVVQKRRVQYGPIDAKASRELFIRGALVAGHYPGQADFLEYNRSLIEDVQQLEHKSRRHDVLVDDEAIFAFYAERIPDGLYS 534
GNIG ++ YLG R+IKF ++P S L KKG KWV+AAE+ ETTRLYARCVA IEPEW+E +G HL KRSY +PHW K +G V A+E+ +++GL++ K+RV YGP++ + SR +FIR ALV G + QA F +N+ LI D++ LEHK+RR DVLVDDE IFAFY RIP G+++
Sbjct: 169 GNIGTRAVNEPHYLGPREIKFFIAPNSVLAKKGAKWVVAAEIVETTRLYARCVARIEPEWLEEVGAHLIKRSYYDPHWEKKAGQVAAWERSTLFGLLINPKKRVHYGPMNPQESRAVFIREALVNGEFNSQAPFFAHNQKLIADIEALEHKARRPDVLVDDELIFAFYDARIPAGIHN 346
BLAST of mRNA_P-wetherbeei_contig52534.1.1 vs. uniprot
Match: A0A1F3ZWS7_9PROT (ATP-dependent RNA helicase HrpA n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F3ZWS7_9PROT) HSP 1 Score: 222 bits (565), Expect = 7.840e-64 Identity = 105/178 (58.99%), Postives = 132/178 (74.16%), Query Frame = 1
Query: 1 GNIGFKSEEAGIYLGARQIKFVLSPASGLKKKGPKWVMAAELTETTRLYARCVAAIEPEWIERLGTHLAKRSYREPHWSKDSGSVVAYEQVSVYGLVVVQKRRVQYGPIDAKASRELFIRGALVAGHYPGQADFLEYNRSLIEDVQQLEHKSRRHDVLVDDEAIFAFYAERIPDGLYS 534
GNIG K+EE G YLGAR I+F + P S L+K PKWVMAAEL ETTRLYARCVA IEPEWIE + HL R Y +PHW K+ VVAYE+V++YGL VV KRRV YGPI+ + +R +FIR L AG Y +A F E+NR L+ ++Q+LEHK+RR DVLVD+E +F FY +P G+++
Sbjct: 573 GNIGCKTEEGGEYLGARGIRFAIFPGSVLRKAQPKWVMAAELAETTRLYARCVAKIEPEWIEPVARHLVNRHYFDPHWEKERALVVAYERVTLYGLTVVAKRRVHYGPINPEEARRIFIRSGLAAGDYVTRAPFFEHNRRLVAEIQELEHKARRRDVLVDEETVFGFYEGIVPAGIHN 750
BLAST of mRNA_P-wetherbeei_contig52534.1.1 vs. uniprot
Match: A0A1I4PQJ6_9PROT (ATP-dependent helicase HrpA n=7 Tax=Nitrosomonas TaxID=914 RepID=A0A1I4PQJ6_9PROT) HSP 1 Score: 221 bits (564), Expect = 1.080e-63 Identity = 106/177 (59.89%), Postives = 131/177 (74.01%), Query Frame = 1
Query: 1 GNIGFKSEEAGIYLGARQIKFVLSPASGLKKKGPKWVMAAELTETTRLYARCVAAIEPEWIERLGTHLAKRSYREPHWSKDSGSVVAYEQVSVYGLVVVQKRRVQYGPIDAKASRELFIRGALVAGHYPGQADFLEYNRSLIEDVQQLEHKSRRHDVLVDDEAIFAFYAERIPDGLY 531
GNIGFKSE G YLGAR IKF + P S LKK PKW++AAELTET +LYARCVAAI+P W+E + L K+ Y +PHW K V AYE+V++YGL +V KRRV YG I+ K +RE+FIR ALVAG Y +A F E+NR LIE +++LEHK+RR DVLVD++ IFAFY IP +Y
Sbjct: 582 GNIGFKSESEGEYLGARGIKFSIFPGSSLKKTKPKWIVAAELTETAKLYARCVAAIDPSWLENIAGRLCKKHYFDPHWEKQPAQVAAYERVTLYGLTIVPKRRVAYGRINPKEAREIFIRNALVAGEYVTKAPFFEHNRKLIETIEELEHKARRQDVLVDEQEIFAFYDAIIPADIY 758 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52534.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig52534.1.1 >prot_P-wetherbeei_contig52534.1.1 ID=prot_P-wetherbeei_contig52534.1.1|Name=mRNA_P-wetherbeei_contig52534.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=178bp GNIGFKSEEAGIYLGARQIKFVLSPASGLKKKGPKWVMAAELTETTRLYAback to top mRNA from alignment at P-wetherbeei_contig52534:9..542- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig52534.1.1 ID=mRNA_P-wetherbeei_contig52534.1.1|Name=mRNA_P-wetherbeei_contig52534.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig52534:9..542- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig52534:9..542- >mRNA_P-wetherbeei_contig52534.1.1 ID=mRNA_P-wetherbeei_contig52534.1.1|Name=mRNA_P-wetherbeei_contig52534.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig52534:9..542- (Phaeothamnion wetherbeei SAG_119_79)back to top |