mRNA_P-wetherbeei_contig525.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig525.1.1
Unique NamemRNA_P-wetherbeei_contig525.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig525.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig525contigP-wetherbeei_contig525:1350..2445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size823
Hectar predicted targeting categoryother localisation
Exons2
Cds size822
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186786.2975187-CDS-P-wetherbeei_contig525:1349..14001683186786.2975187-CDS-P-wetherbeei_contig525:1349..1400Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig525 1350..1400 +
1683186786.3069952-CDS-P-wetherbeei_contig525:1673..24441683186786.3069952-CDS-P-wetherbeei_contig525:1673..2444Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig525 1674..2444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig525.1.1prot_P-wetherbeei_contig525.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig525 1350..2444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig525.1.1

>prot_P-wetherbeei_contig525.1.1 ID=prot_P-wetherbeei_contig525.1.1|Name=mRNA_P-wetherbeei_contig525.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=274bp
HELAEVFQTEHCDIVAVASISDKARVVSLDAYLQEHQRRRRHADARRDRM
ASVGGGCCDDGGARGGTGGSSGGGAGDGGAEGDGIGDGNGNVAFGGRGHS
GRGCRGGGGGRGSIDGGSACRGNEDCGSEEDGQGEEEEEEKEEEKEEDNL
FYCRSFYAYKSRKFRPLSGAFGCLQRARKLSTHSAYLVPHLNGAGADRGR
GGTSGGATGNNRGSRSRGKRKDIRDDGSSKGGLGGEDYGMNCGGGVRGGG
DSSGGGGVGDKGASAGGGVSARMP
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mRNA from alignment at P-wetherbeei_contig525:1350..2445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig525.1.1 ID=mRNA_P-wetherbeei_contig525.1.1|Name=mRNA_P-wetherbeei_contig525.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1096bp|location=Sequence derived from alignment at P-wetherbeei_contig525:1350..2445+ (Phaeothamnion wetherbeei SAG_119_79)
CATGAACTTGCCGAGGTGTTTCAGACGGAGCACTGCGACATCGTTGCTGT
GGTAAGCGGATGATTTGCCATTACCCTTGACAAAAGAAGGAGCACTCCGG
GTGGTGGGTTTGCAGTGGTCGGCTTCAACTGCAGCAGCGGAGTGCTTGGG
CAGCGGCGACGCAACCTCTCGAGGCGAAGATGCAGCTTTGACAACATAGT
TCCCCCGTGGCATCTCTTTACATGGCAACTAGTCGCCGGAATGGAAGGGA
AGGTCGATGTCTTTCCTCAAGTCAGTGGTGTGCGTCCCGTCCTGTCCCCT
TGTTTTTACATTTCCTTCCCCCAGGCCTCCATCTCCGACAAGGCGCGCGT
CGTCAGCCTTGACGCGTACCTCCAGGAGCATCAGCGCCGCCGCCGTCACG
CTGATGCTCGCCGCGATAGAATGGCGTCGGTAGGAGGTGGCTGCTGCGAC
GACGGTGGCGCCAGAGGCGGCACTGGCGGCAGCAGCGGCGGCGGTGCCGG
CGACGGTGGGGCTGAAGGCGATGGCATTGGTGACGGGAACGGCAACGTTG
CTTTTGGCGGCCGCGGCCATTCCGGCCGTGGCTGTCGTGGCGGCGGCGGC
GGCCGTGGCAGCATCGACGGCGGCAGCGCGTGCCGGGGCAACGAGGACTG
TGGCAGCGAAGAGGACGGCCAGGGCGAGGAGGAGGAGGAGGAGAAGGAGG
AAGAGAAAGAGGAAGACAACCTCTTCTACTGCCGGAGCTTTTACGCGTAT
AAAAGCCGCAAGTTCCGCCCTCTCTCCGGCGCATTCGGCTGTCTCCAGCG
GGCCCGAAAGCTCAGCACCCACTCCGCCTACCTCGTTCCACACCTGAACG
GAGCTGGGGCCGACCGCGGCAGAGGCGGCACCAGCGGCGGCGCTACTGGC
AACAATCGAGGCAGCCGCTCTCGCGGCAAACGGAAAGACATCCGTGATGA
TGGCAGCAGCAAGGGCGGGCTTGGTGGCGAGGATTACGGCATGAACTGCG
GTGGCGGCGTTCGCGGCGGTGGGGACAGCAGCGGCGGCGGCGGCGTTGGC
GACAAGGGCGCCAGCGCTGGTGGCGGCGTTTCCGCTCGGATGCCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig525:1350..2445+

>mRNA_P-wetherbeei_contig525.1.1 ID=mRNA_P-wetherbeei_contig525.1.1|Name=mRNA_P-wetherbeei_contig525.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=822bp|location=Sequence derived from alignment at P-wetherbeei_contig525:1350..2445+ (Phaeothamnion wetherbeei SAG_119_79)
CATGAACTTGCCGAGGTGTTTCAGACGGAGCACTGCGACATCGTTGCTGT
GGCCTCCATCTCCGACAAGGCGCGCGTCGTCAGCCTTGACGCGTACCTCC
AGGAGCATCAGCGCCGCCGCCGTCACGCTGATGCTCGCCGCGATAGAATG
GCGTCGGTAGGAGGTGGCTGCTGCGACGACGGTGGCGCCAGAGGCGGCAC
TGGCGGCAGCAGCGGCGGCGGTGCCGGCGACGGTGGGGCTGAAGGCGATG
GCATTGGTGACGGGAACGGCAACGTTGCTTTTGGCGGCCGCGGCCATTCC
GGCCGTGGCTGTCGTGGCGGCGGCGGCGGCCGTGGCAGCATCGACGGCGG
CAGCGCGTGCCGGGGCAACGAGGACTGTGGCAGCGAAGAGGACGGCCAGG
GCGAGGAGGAGGAGGAGGAGAAGGAGGAAGAGAAAGAGGAAGACAACCTC
TTCTACTGCCGGAGCTTTTACGCGTATAAAAGCCGCAAGTTCCGCCCTCT
CTCCGGCGCATTCGGCTGTCTCCAGCGGGCCCGAAAGCTCAGCACCCACT
CCGCCTACCTCGTTCCACACCTGAACGGAGCTGGGGCCGACCGCGGCAGA
GGCGGCACCAGCGGCGGCGCTACTGGCAACAATCGAGGCAGCCGCTCTCG
CGGCAAACGGAAAGACATCCGTGATGATGGCAGCAGCAAGGGCGGGCTTG
GTGGCGAGGATTACGGCATGAACTGCGGTGGCGGCGTTCGCGGCGGTGGG
GACAGCAGCGGCGGCGGCGGCGTTGGCGACAAGGGCGCCAGCGCTGGTGG
CGGCGTTTCCGCTCGGATGCCC
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