mRNA_P-wetherbeei_contig52333.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52333.1.1
Unique NamemRNA_P-wetherbeei_contig52333.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52333.1.1 vs. uniprot
Match: A0A385TVY7_PAELA (Class C beta-lactamase-related serine hydrolase n=7 Tax=Paenibacillus TaxID=44249 RepID=A0A385TVY7_PAELA)

HSP 1 Score: 158 bits (399), Expect = 1.580e-44
Identity = 77/152 (50.66%), Postives = 107/152 (70.39%), Query Frame = 1
Query:   13 AKDAGFSGAISVSPLAGDSSLELAFGYADRANRLPNAVDTRFAMASGCKGFTAAAVWLLIDAGKIALETRLSECVTSRQFHFGSQVTLGQLLNHTSGIPDYFSEEIESDYAALWRERPCYGMKSVRDFLPLFEAAPMKAPPGQGFLYNNAGF 468
            A ++ FSG + ++    ++    AFGY++RA+R+PN  DTRF +ASGCK FTA AV  LI+ GK++L+++LSEC+  R  H   ++T+  LL+HTSGIPDYF EE+  D+  LW+  P Y ++S RDFLPLF+  PMK  PG+ F YNNAGF
Sbjct:    9 AANSHFSGTVLLTDQNRNTIWNAAFGYSNRADRIPNQADTRFGIASGCKLFTAIAVCQLIEQGKLSLDSKLSECLDIRLPHVSPEITVFHLLSHTSGIPDYFDEEVMDDFEDLWKAVPMYTLRSGRDFLPLFQNEPMKFQPGERFHYNNAGF 160          
BLAST of mRNA_P-wetherbeei_contig52333.1.1 vs. uniprot
Match: UPI001F297641 (beta-lactamase family protein n=1 Tax=Saccharibacillus alkalitolerans TaxID=2705290 RepID=UPI001F297641)

HSP 1 Score: 157 bits (397), Expect = 9.850e-44
Identity = 75/147 (51.02%), Postives = 98/147 (66.67%), Query Frame = 1
Query:   28 FSGAISVSPLAGDSSLELAFGYADRANRLPNAVDTRFAMASGCKGFTAAAVWLLIDAGKIALETRLSECVTSRQFHFGSQVTLGQLLNHTSGIPDYFSEEIESDYAALWRERPCYGMKSVRDFLPLFEAAPMKAPPGQGFLYNNAGF 468
            FSG + V+   GD + E AFG+A+R+ RL N  DTRF +ASGCK FTA A+  LI+ GK++  T+LS+C  +   HF   +T+  LL H+SG+PDYF EE+  D+  LWRERP YGM     FLPLF   PMK  PG+ F YNN+G+
Sbjct:   49 FSGVVRVTA-GGDQASEAAFGFANRSERLDNTADTRFGIASGCKIFTAVAICQLIEQGKLSFGTKLSDCSIAEFPHFDPNITVHHLLTHSSGVPDYFDEEVMDDFEELWRERPVYGMTEAEHFLPLFAGQPMKFKPGERFSYNNSGY 194          
BLAST of mRNA_P-wetherbeei_contig52333.1.1 vs. uniprot
Match: A0A061PE42_9BACL (Penicillin-binding protein n=1 Tax=Geomicrobium sp. JCM 19039 TaxID=1460636 RepID=A0A061PE42_9BACL)

HSP 1 Score: 152 bits (384), Expect = 2.320e-42
Identity = 73/154 (47.40%), Postives = 100/154 (64.94%), Query Frame = 1
Query:    7 RIAKDAGFSGAISVSPLAGDSSLELAFGYADRANRLPNAVDTRFAMASGCKGFTAAAVWLLIDAGKIALETRLSECVTSRQFHFGSQVTLGQLLNHTSGIPDYFSEEIESDYAALWRERPCYGMKSVRDFLPLFEAAPMKAPPGQGFLYNNAGF 468
             + +D  FSG + +     D   E AFGYA++A +L N   TRF +ASG K FT+AA+  L++ GK++  TRL +CV     HF   +T+  LL HTSGIPDYF EE+  D++ALW E+P Y M+  +DFLP+F+  PMK  PG+ F YNNAG+
Sbjct:   12 NVQRDVNFSGVVFIKE--NDGVFEQAFGYANQAEQLKNRPSTRFGIASGAKVFTSAAICRLVEEGKLSFNTRLQQCVDIAFPHFHEDITIHHLLTHTSGIPDYFDEEMMDDFSALWDEKPMYSMREGKDFLPMFQQDPMKFHPGERFHYNNAGY 163          
BLAST of mRNA_P-wetherbeei_contig52333.1.1 vs. uniprot
Match: A0A5Q4GHJ4_9DEIN (Class A beta-lactamase-related serine hydrolase n=1 Tax=Trueperaceae bacterium TaxID=2026798 RepID=A0A5Q4GHJ4_9DEIN)

HSP 1 Score: 151 bits (381), Expect = 4.130e-42
Identity = 78/147 (53.06%), Postives = 98/147 (66.67%), Query Frame = 1
Query:   28 FSGAISVSPLAGDSSLELAFGYADRANRLPNAVDTRFAMASGCKGFTAAAVWLLIDAGKIALETRLSECVTSRQFHFGSQVTLGQLLNHTSGIPDYFSEEIESDYAALWRERPCYGMKSVRDFLPLFEAAPMKAPPGQGFLYNNAGF 468
            FSG I V    G++    AFG A RA R+PN + TRFA+ASG K  T+ AV  L+DAG++ L+TRL +CV     +   +VTL  LL+H +GIPDYF E +  DY ALWRERP YGM++  DFLPLF   PMKA PG  + YNNAG+
Sbjct:   21 FSGVIDVRER-GETVFAEAFGMAQRAERIPNTLGTRFAIASGTKTLTSVAVLQLVDAGRVGLDTRLVDCVDVPLPNVAPEVTLHHLLSHGAGIPDYFDEAVMDDYEALWRERPMYGMRAPSDFLPLFVHQPMKAAPGTTWAYNNAGY 166          
BLAST of mRNA_P-wetherbeei_contig52333.1.1 vs. uniprot
Match: UPI000471B78B (serine hydrolase n=1 Tax=Sporosarcina sp. D27 TaxID=1382305 RepID=UPI000471B78B)

HSP 1 Score: 152 bits (383), Expect = 4.510e-42
Identity = 70/151 (46.36%), Postives = 107/151 (70.86%), Query Frame = 1
Query:   16 KDAGFSGAISVSPLAGDSSLELAFGYADRANRLPNAVDTRFAMASGCKGFTAAAVWLLIDAGKIALETRLSECVTSRQFHFGSQVTLGQLLNHTSGIPDYFSEEIESDYAALWRERPCYGMKSVRDFLPLFEAAPMKAPPGQGFLYNNAGF 468
            K+  FSGA       GD+ +  + GYA+ ++++ N ++TRF++ASGCK FTA A+ +LI+ GK+  +++LS+CV     HF S++T+ QLL HTSG+PDYF+E++  DY  LW +R  Y ++S +DFLPLF+  PM+A PG+ F YNN+G+
Sbjct:   15 KELSFSGAFYGRK--GDNIITGSHGYANWSDKIENQLNTRFSIASGCKIFTATAICMLIEEGKLTFDSKLSDCVAIEFPHFNSEITIHQLLTHTSGVPDYFNEDVMEDYEELWEKRSAYNVRSPKDFLPLFQHEPMQAEPGRSFQYNNSGY 163          
BLAST of mRNA_P-wetherbeei_contig52333.1.1 vs. uniprot
Match: UPI00064DE3B5 (serine hydrolase n=1 Tax=Ornithinibacillus californiensis TaxID=161536 RepID=UPI00064DE3B5)

HSP 1 Score: 151 bits (381), Expect = 7.810e-42
Identity = 75/156 (48.08%), Postives = 101/156 (64.74%), Query Frame = 1
Query:    1 IARIAKDAGFSGAISVSPLAGDSSLELAFGYADRANRLPNAVDTRFAMASGCKGFTAAAVWLLIDAGKIALETRLSECVTSRQFHFGSQVTLGQLLNHTSGIPDYFSEEIESDYAALWRERPCYGMKSVRDFLPLFEAAPMKAPPGQGFLYNNAGF 468
            +  I  + GFSGA+ V    G+   E AFGY++R+ R  N++ TRF +ASGCK FTA  + +L+D GK+  ETRL +C+     HF   VT+ QLL HTSGIPDYF E +  D+  LW+ RP Y M+ ++DFLP+F+   M   PG+ F YNNAGF
Sbjct:    9 VEEIVGEIGFSGAVLVKNN-GNVVYESAFGYSNRSERRENSLSTRFGIASGCKLFTAVGIGILVDEGKLNFETRLKDCLDIDFPHFSEDVTVHQLLTHTSGIPDYFDESVMDDFEELWQARPMYMMRELKDFLPMFQHRGMMFQPGERFHYNNAGF 163          
BLAST of mRNA_P-wetherbeei_contig52333.1.1 vs. uniprot
Match: A0A2M9MQN5_9BACL (Beta-lactamase domain-containing protein n=10 Tax=Paenibacillus TaxID=44249 RepID=A0A2M9MQN5_9BACL)

HSP 1 Score: 150 bits (380), Expect = 1.080e-41
Identity = 74/147 (50.34%), Postives = 103/147 (70.07%), Query Frame = 1
Query:   28 FSGAISVSPLAGDSSLELAFGYADRANRLPNAVDTRFAMASGCKGFTAAAVWLLIDAGKIALETRLSECVTSRQFHFGSQVTLGQLLNHTSGIPDYFSEEIESDYAALWRERPCYGMKSVRDFLPLFEAAPMKAPPGQGFLYNNAGF 468
            FSGA+ V+    +   + AFGY++RA+R+PN  DTRF +ASGCK FTA AV  LI+ GK++L+++L +C+     HF  ++T+  LL+H+SGIPDYF EEI  D+  LW+  P Y +++ RDFLPLF+   MK  PG+ F YNNAGF
Sbjct:   14 FSGAVLVTDENDNIVWDGAFGYSNRADRIPNQADTRFGIASGCKLFTAIAVCQLIEQGKLSLDSKLGDCLDISLPHFSPEITVFHLLSHSSGIPDYFDEEIMDDFEDLWKAVPMYTLRNGRDFLPLFQDERMKFQPGERFHYNNAGF 160          
BLAST of mRNA_P-wetherbeei_contig52333.1.1 vs. uniprot
Match: UPI000579C03B (serine hydrolase n=1 Tax=Sporosarcina sp. ZBG7A TaxID=1582223 RepID=UPI000579C03B)

HSP 1 Score: 150 bits (380), Expect = 1.260e-41
Identity = 69/151 (45.70%), Postives = 105/151 (69.54%), Query Frame = 1
Query:   16 KDAGFSGAISVSPLAGDSSLELAFGYADRANRLPNAVDTRFAMASGCKGFTAAAVWLLIDAGKIALETRLSECVTSRQFHFGSQVTLGQLLNHTSGIPDYFSEEIESDYAALWRERPCYGMKSVRDFLPLFEAAPMKAPPGQGFLYNNAGF 468
            K+  FSGA       GD+ +  + GY++ ++++ N ++TRF++ASGCK FTA A+ +L++ GK+  +++L +CV     HF S++T+ QLL HTSGIPDYF+E++  DY  LW  RP Y ++S +DFLPLF+  PM+A PG  F YNN+G+
Sbjct:   15 KELSFSGAFYGRK--GDNIITGSHGYSNWSDKVENQLNTRFSIASGCKIFTATAICMLVEEGKVTFDSKLIDCVDLESPHFNSEITIHQLLTHTSGIPDYFNEDVMEDYEELWESRPAYNVRSPKDFLPLFQHEPMQAEPGSPFQYNNSGY 163          
BLAST of mRNA_P-wetherbeei_contig52333.1.1 vs. uniprot
Match: A0A1X7HRU3_9BACL (CubicO group peptidase, beta-lactamase class C family n=2 Tax=Paenibacillus TaxID=44249 RepID=A0A1X7HRU3_9BACL)

HSP 1 Score: 150 bits (378), Expect = 2.620e-41
Identity = 75/156 (48.08%), Postives = 100/156 (64.10%), Query Frame = 1
Query:    1 IARIAKDAGFSGAISVSPLAGDSSLELAFGYADRANRLPNAVDTRFAMASGCKGFTAAAVWLLIDAGKIALETRLSECVTSRQFHFGSQVTLGQLLNHTSGIPDYFSEEIESDYAALWRERPCYGMKSVRDFLPLFEAAPMKAPPGQGFLYNNAGF 468
            I  + K+  FSG I V     D+ +   +G+A+RA +L N   TR+ +ASGCK FTA A+  L++ GK++L TRLSEC+     HF   +T+  LL HTSG+PDYF EE+  D+  LW ERP Y M+ + DFLPLF+   MK  PG+ F YNNAGF
Sbjct:    9 IENVQKNNSFSGTILVKHK-NDALVHAGYGHANRAEQLNNHTGTRYGIASGCKIFTATAICQLVEEGKLSLATRLSECLDVEFPHFNENITIHHLLTHTSGVPDYFDEEVMDDFEELWIERPMYHMRRLHDFLPLFQDGHMKFAPGERFHYNNAGF 163          
BLAST of mRNA_P-wetherbeei_contig52333.1.1 vs. uniprot
Match: A0A7X9R643_9BACI (Serine hydrolase n=2 Tax=Psychrobacillus sp. BL-248-WT-3 TaxID=2725306 RepID=A0A7X9R643_9BACI)

HSP 1 Score: 149 bits (377), Expect = 2.940e-41
Identity = 74/152 (48.68%), Postives = 104/152 (68.42%), Query Frame = 1
Query:   16 KDAGFSGAISVSPLAGDSSL-ELAFGYADRANRLPNAVDTRFAMASGCKGFTAAAVWLLIDAGKIALETRLSECVTSRQFHFGSQVTLGQLLNHTSGIPDYFSEEIESDYAALWRERPCYGMKSVRDFLPLFEAAPMKAPPGQGFLYNNAGF 468
            K++ FSG+I +     DSSL E  FGYA+R++ L N +DTRF +ASGCK FTA A+  L++AGK+A + +L +C +    HF + +T+  LL HTSG+PDYF EE+  D+  LW E+P Y M+ + DFLPLF+   M+  PG+ F YNNAG+
Sbjct:   11 KESQFSGSILLKNK--DSSLVETNFGYANRSDLLLNTIDTRFGIASGCKIFTAVAISQLVEAGKLAYDQKLKDCTSITLPHFDNSITIHHLLTHTSGVPDYFDEEVMDDFEELWIEKPMYHMRKLEDFLPLFQNGKMRFTPGEQFHYNNAGY 160          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52333.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A385TVY7_PAELA1.580e-4450.66Class C beta-lactamase-related serine hydrolase n=... [more]
UPI001F2976419.850e-4451.02beta-lactamase family protein n=1 Tax=Saccharibaci... [more]
A0A061PE42_9BACL2.320e-4247.40Penicillin-binding protein n=1 Tax=Geomicrobium sp... [more]
A0A5Q4GHJ4_9DEIN4.130e-4253.06Class A beta-lactamase-related serine hydrolase n=... [more]
UPI000471B78B4.510e-4246.36serine hydrolase n=1 Tax=Sporosarcina sp. D27 TaxI... [more]
UPI00064DE3B57.810e-4248.08serine hydrolase n=1 Tax=Ornithinibacillus califor... [more]
A0A2M9MQN5_9BACL1.080e-4150.34Beta-lactamase domain-containing protein n=10 Tax=... [more]
UPI000579C03B1.260e-4145.70serine hydrolase n=1 Tax=Sporosarcina sp. ZBG7A Ta... [more]
A0A1X7HRU3_9BACL2.620e-4148.08CubicO group peptidase, beta-lactamase class C fam... [more]
A0A7X9R643_9BACI2.940e-4148.68Serine hydrolase n=2 Tax=Psychrobacillus sp. BL-24... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52333contigP-wetherbeei_contig52333:2..469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1382305.AZUC01000014_gene2372
PFAMsBeta-lactamase
Model size468
Max annot lvl91061|Bacilli
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.39e-43
EggNOG OGsCOG1680@1|root,COG1680@2|Bacteria,1TRR5@1239|Firmicutes,4HAZF@91061|Bacilli,26D5S@186818|Planococcaceae
DescriptionBeta-lactamase
Cds size468
COG categoryV
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186784.425952-CDS-P-wetherbeei_contig52333:1..4691683186784.425952-CDS-P-wetherbeei_contig52333:1..469Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52333 2..469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52333.1.1prot_P-wetherbeei_contig52333.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52333 2..469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52333.1.1

>prot_P-wetherbeei_contig52333.1.1 ID=prot_P-wetherbeei_contig52333.1.1|Name=mRNA_P-wetherbeei_contig52333.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
IARIAKDAGFSGAISVSPLAGDSSLELAFGYADRANRLPNAVDTRFAMAS
GCKGFTAAAVWLLIDAGKIALETRLSECVTSRQFHFGSQVTLGQLLNHTS
GIPDYFSEEIESDYAALWRERPCYGMKSVRDFLPLFEAAPMKAPPGQGFL
YNNAGF
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mRNA from alignment at P-wetherbeei_contig52333:2..469-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52333.1.1 ID=mRNA_P-wetherbeei_contig52333.1.1|Name=mRNA_P-wetherbeei_contig52333.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig52333:2..469- (Phaeothamnion wetherbeei SAG_119_79)
ATCGCGCGCATCGCCAAAGACGCCGGATTCTCCGGCGCTATTTCCGTCTC ACCCTTGGCCGGCGATTCCTCATTGGAGCTGGCGTTCGGTTATGCCGACC GGGCGAACCGACTTCCCAATGCCGTCGACACCCGGTTCGCCATGGCGTCG GGGTGCAAGGGCTTCACCGCGGCGGCGGTGTGGCTGCTGATCGACGCGGG AAAGATCGCGCTGGAAACGCGTCTGTCGGAATGCGTGACGTCGCGCCAGT TCCATTTCGGCTCCCAGGTCACCCTCGGGCAATTGCTGAACCATACCTCG GGTATCCCGGACTATTTCAGCGAGGAGATCGAGTCCGACTACGCGGCGCT GTGGCGGGAGCGGCCCTGCTACGGCATGAAATCGGTGCGGGATTTCCTGC CCCTGTTCGAAGCGGCGCCGATGAAGGCGCCGCCGGGGCAAGGGTTCCTC TACAACAATGCCGGTTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52333:2..469-

>mRNA_P-wetherbeei_contig52333.1.1 ID=mRNA_P-wetherbeei_contig52333.1.1|Name=mRNA_P-wetherbeei_contig52333.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig52333:2..469- (Phaeothamnion wetherbeei SAG_119_79)
ATCGCGCGCATCGCCAAAGACGCCGGATTCTCCGGCGCTATTTCCGTCTC
ACCCTTGGCCGGCGATTCCTCATTGGAGCTGGCGTTCGGTTATGCCGACC
GGGCGAACCGACTTCCCAATGCCGTCGACACCCGGTTCGCCATGGCGTCG
GGGTGCAAGGGCTTCACCGCGGCGGCGGTGTGGCTGCTGATCGACGCGGG
AAAGATCGCGCTGGAAACGCGTCTGTCGGAATGCGTGACGTCGCGCCAGT
TCCATTTCGGCTCCCAGGTCACCCTCGGGCAATTGCTGAACCATACCTCG
GGTATCCCGGACTATTTCAGCGAGGAGATCGAGTCCGACTACGCGGCGCT
GTGGCGGGAGCGGCCCTGCTACGGCATGAAATCGGTGCGGGATTTCCTGC
CCCTGTTCGAAGCGGCGCCGATGAAGGCGCCGCCGGGGCAAGGGTTCCTC
TACAACAATGCCGGTTTC
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