mRNA_P-wetherbeei_contig52232.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52232.1.1
Unique NamemRNA_P-wetherbeei_contig52232.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52232.1.1 vs. uniprot
Match: A0A428MLW8_9BACT (Uncharacterized protein n=1 Tax=Edaphobacter aggregans TaxID=570835 RepID=A0A428MLW8_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 3.270e-11
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:  118 VLTVATLLAFVALSWALLGTPFFWPKNGGYNLFSGNNPFAYGELLGNFNGEYSVDRGLAWCGVEGDRYTLP---------DDVYLRCTIRFATENPGEFLRLAAYKVYTMLFRPNLKL 444
            V TV+   A++ L     G+PFF P+NG YNLF+GNNPFA    L N NGE+S++     C  E   ++ P         ++ Y R +I +A  +P   ++L   K++T  FRP++++
Sbjct:  211 VFTVSGFSAYILLGTVGHGSPFF-PRNGSYNLFAGNNPFAASAFLANLNGEFSINAAYRACHPELS-FSAPSPDFRDPSLNNFYRRSSIDYALHHPAAEVKLFGIKLFTF-FRPDIRI 325
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52232.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A428MLW8_9BACT3.270e-1135.59Uncharacterized protein n=1 Tax=Edaphobacter aggre... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52232contigP-wetherbeei_contig52232:86..535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size450
Hectar predicted targeting categorysignal peptide
Exons1
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186783.3722982-CDS-P-wetherbeei_contig52232:85..5351683186783.3722982-CDS-P-wetherbeei_contig52232:85..535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52232 86..535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52232.1.1prot_P-wetherbeei_contig52232.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52232 86..535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52232.1.1

>prot_P-wetherbeei_contig52232.1.1 ID=prot_P-wetherbeei_contig52232.1.1|Name=mRNA_P-wetherbeei_contig52232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
LLAGLVLGLFILVRPNSITLLFALAAVAWLARTPWSRPAVLTVATLLAFV
ALSWALLGTPFFWPKNGGYNLFSGNNPFAYGELLGNFNGEYSVDRGLAWC
GVEGDRYTLPDDVYLRCTIRFATENPGEFLRLAAYKVYTMLFRPNLKLAD
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mRNA from alignment at P-wetherbeei_contig52232:86..535-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52232.1.1 ID=mRNA_P-wetherbeei_contig52232.1.1|Name=mRNA_P-wetherbeei_contig52232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig52232:86..535- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTCGCCGGCCTCGTGCTCGGCCTGTTCATCCTCGTGCGGCCGAACTC
GATCACGCTGCTGTTTGCCCTGGCGGCGGTCGCCTGGCTTGCCCGCACAC
CATGGTCGCGGCCGGCGGTGTTGACGGTCGCGACGCTGCTGGCCTTCGTC
GCGCTGTCCTGGGCTCTTCTCGGCACGCCGTTCTTCTGGCCGAAGAACGG
TGGCTACAATCTCTTCTCCGGCAACAATCCCTTCGCCTACGGCGAGCTGC
TGGGCAATTTCAACGGCGAGTATTCGGTCGACAGAGGCCTCGCCTGGTGC
GGCGTCGAGGGCGATCGCTACACCCTGCCCGACGACGTCTATCTGCGCTG
CACGATCCGCTTCGCCACGGAGAACCCCGGCGAATTCCTCCGGCTGGCCG
CTTACAAGGTCTATACCATGCTGTTCCGCCCCAACCTCAAGCTGGCGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52232:86..535-

>mRNA_P-wetherbeei_contig52232.1.1 ID=mRNA_P-wetherbeei_contig52232.1.1|Name=mRNA_P-wetherbeei_contig52232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig52232:86..535- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTCGCCGGCCTCGTGCTCGGCCTGTTCATCCTCGTGCGGCCGAACTC
GATCACGCTGCTGTTTGCCCTGGCGGCGGTCGCCTGGCTTGCCCGCACAC
CATGGTCGCGGCCGGCGGTGTTGACGGTCGCGACGCTGCTGGCCTTCGTC
GCGCTGTCCTGGGCTCTTCTCGGCACGCCGTTCTTCTGGCCGAAGAACGG
TGGCTACAATCTCTTCTCCGGCAACAATCCCTTCGCCTACGGCGAGCTGC
TGGGCAATTTCAACGGCGAGTATTCGGTCGACAGAGGCCTCGCCTGGTGC
GGCGTCGAGGGCGATCGCTACACCCTGCCCGACGACGTCTATCTGCGCTG
CACGATCCGCTTCGCCACGGAGAACCCCGGCGAATTCCTCCGGCTGGCCG
CTTACAAGGTCTATACCATGCTGTTCCGCCCCAACCTCAAGCTGGCGGAC
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