mRNA_P-wetherbeei_contig52229.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52229.1.1
Unique NamemRNA_P-wetherbeei_contig52229.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52229.1.1 vs. uniprot
Match: A0A7C3TT19_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7C3TT19_9BACT)

HSP 1 Score: 164 bits (416), Expect = 8.690e-44
Identity = 87/181 (48.07%), Postives = 121/181 (66.85%), Query Frame = 1
Query:    1 FDEGTNMALVAKGTTLNPGQIIDPLVHYVGQTAVRFVDQGEAPRLKDLAPFINRTTRQVTSSNGQLKLDYGRGLLTINAPMAQGVMGDMKQVASTATRDLVIASQMDLGAVVAVALDGQPLTTSGKILVQVMSEEQPLGFETAPYPDLAGFLSIKKAGAPTWSLKSISGSIQFTRPDAAQL 543
            FDE   +  V +GT + PG +IDPLVH  G+T      +G A +L DL+ +I+R  + V S+ GQL+LDYGRG+LTINAP AQG+ G ++Q  +    D+VI+S M+LG +VAV+LDG+PL  S +IL+QVMSEE+  GF T P  D+   +SI   G   W ++ ISG+++F R DAA L
Sbjct:  684 FDE-LRLKDVPQGTEIKPGNVIDPLVHLAGRTKTNITAEGGAHKLADLSRYIDRRAQTVVSTTGQLRLDYGRGVLTINAPAAQGISGHLRQAGTADLADVVISSDMELGHIVAVSLDGRPLAGSERILLQVMSEEKNSGFRTQPAGDVQRIVSI---GRDPWLVRQISGTVKFKRADAAGL 860          
BLAST of mRNA_P-wetherbeei_contig52229.1.1 vs. uniprot
Match: UPI00199FA9D4 (Uncharacterized protein n=1 Tax=Chthonomonadaceae bacterium TaxID=2739509 RepID=UPI00199FA9D4)

HSP 1 Score: 160 bits (406), Expect = 1.290e-42
Identity = 85/172 (49.42%), Postives = 113/172 (65.70%), Query Frame = 1
Query:   28 VAKGTTLNPGQIIDPLVHYVGQTAVRFVDQGEAPRLKDLAPFINRTTRQVTSSNGQLKLDYGRGLLTINAPMAQGVMGDMKQVASTATRDLVIASQMDLGAVVAVALDGQPLTTSGKILVQVMSEEQPLGFETAPYPDLAGFLSIKKAGAPTWSLKSISGSIQFTRPDAAQL 543
            V  G  + PG IIDPL+H+ GQT V F   G   ++ DL+  I+R  + +TSS+ QLKLDYG G L INAP AQG+ GD+ ++      DL ++S+M LG ++AV+LDG+PL+TS KIL+QVMSEE+  GFET P  +  G   I   G   WS+KS++GSI F R DA  L
Sbjct:  547 VPVGNEIKPGNIIDPLIHFAGQTRVDFSVAGGTSKISDLSRLIDRKAQTITSSHKQLKLDYGAGTLLINAPGAQGISGDLAKLGKVELADLSVSSEMSLGHMIAVSLDGKPLSTSTKILLQVMSEEKNSGFETEPAEN--GLKRIVSLGQDPWSVKSLTGSIGFKRSDAKSL 716          
BLAST of mRNA_P-wetherbeei_contig52229.1.1 vs. uniprot
Match: A0A7C4LSC5_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7C4LSC5_9BACT)

HSP 1 Score: 161 bits (407), Expect = 1.450e-42
Identity = 84/181 (46.41%), Postives = 118/181 (65.19%), Query Frame = 1
Query:    1 FDEGTNMALVAKGTTLNPGQIIDPLVHYVGQTAVRFVDQGEAPRLKDLAPFINRTTRQVTSSNGQLKLDYGRGLLTINAPMAQGVMGDMKQVASTATRDLVIASQMDLGAVVAVALDGQPLTTSGKILVQVMSEEQPLGFETAPYPDLAGFLSIKKAGAPTWSLKSISGSIQFTRPDAAQL 543
            FDE   +  V  G    PGQ IDPL+HY G+  V+FV +    + +DL P+++   + V+SS G+LKLDYGRGLLT+NAP AQG+ G+++       RD++ +S ++L A++AVALDGQPL  S KIL+QVMSEEQ  GF+T P       +++   G   W  K I G+++F RPDAA+L
Sbjct:  681 FDE-LRLRDVPAGVEFKPGQRIDPLLHYAGRARVQFVAEPAEVQRQDLRPYVDHARQTVSSSTGELKLDYGRGLLTVNAPQAQGLCGNLQAAGRAELRDVIFSSPLELAAMLAVALDGQPLAGSEKILLQVMSEEQTAGFQTEPSGQGKKIVNL---GRDPWLFKEIQGTVRFKRPDAARL 857          
BLAST of mRNA_P-wetherbeei_contig52229.1.1 vs. uniprot
Match: A0A556QRN0_9BACT (Uncharacterized protein n=1 Tax=Rariglobus hedericola TaxID=2597822 RepID=A0A556QRN0_9BACT)

HSP 1 Score: 158 bits (399), Expect = 1.760e-41
Identity = 80/160 (50.00%), Postives = 111/160 (69.38%), Query Frame = 1
Query:   64 IDPLVHYVGQTAVRFVDQGEAPRLKDLAPFINRTTRQVTSSNGQLKLDYGRGLLTINAPMAQGVMGDMKQVASTATRDLVIASQMDLGAVVAVALDGQPLTTSGKILVQVMSEEQPLGFETAPYPDLAGFLSIKKAGAPTWSLKSISGSIQFTRPDAAQL 543
            IDPL+H+VG+T +R  D+G    +KD APFI+R  + V SS  ++KLDYG+G+L +NAP AQGV G++K   S A RD+V+ S+++LG +VAV+LDG+PL  SGKILVQ M+EE+P  F T P  D  G   I   G   W ++ I G+++F R DAA+L
Sbjct:  698 IDPLIHWVGRTNIRIDDKGGPAVIKDTAPFIDRGAQTVLSSTREVKLDYGKGVLYLNAPAAQGVSGNLKLAGSVALRDIVMESELELGQIVAVSLDGRPLAESGKILVQAMTEEKPTDFATEPASD--GVKRITNLGHDPWLIREIQGTLRFKRTDAARL 855          
BLAST of mRNA_P-wetherbeei_contig52229.1.1 vs. uniprot
Match: A0A7X7TEY9_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7X7TEY9_9BACT)

HSP 1 Score: 157 bits (398), Expect = 2.360e-41
Identity = 83/181 (45.86%), Postives = 110/181 (60.77%), Query Frame = 1
Query:    1 FDEGTNMALVAKGTTLNPGQIIDPLVHYVGQTAVRFVDQGEAPRLKDLAPFINRTTRQVTSSNGQLKLDYGRGLLTINAPMAQGVMGDMKQVASTATRDLVIASQMDLGAVVAVALDGQPLTTSGKILVQVMSEEQPLGFETAPYPDLAGFLSIKKAGAPTWSLKSISGSIQFTRPDAAQL 543
            FDE   +  V  GT L PG  +DPL+HY G+T  RF D     +L D + FI+R    VTSS G+LKLDYG+G+LTINAP AQGV GD++     A RD+ I S +DLG +V VA+D QP+  S ++L+QVMSEE+  GF   P   +     I+  G   W ++ + G I F+R DA  L
Sbjct:  671 FDE-LRLRDVPAGTELRPGNRVDPLIHYAGRTRTRFSDTTAPSKLVDTSKFIDRKNSVVTSSTGELKLDYGKGILTINAPAAQGVSGDLRSAGKVALRDITIRSSLDLGHIVVVAMDDQPIAKSKRMLLQVMSEEKATGFSAIPQGKIN---LIESIGKDPWRVRKLQGRISFSRADAGTL 847          
BLAST of mRNA_P-wetherbeei_contig52229.1.1 vs. uniprot
Match: A0A142WWA5_9PLAN (Uncharacterized protein n=1 Tax=Planctomyces sp. SH-PL14 TaxID=1632864 RepID=A0A142WWA5_9PLAN)

HSP 1 Score: 157 bits (396), Expect = 2.690e-41
Identity = 88/181 (48.62%), Postives = 115/181 (63.54%), Query Frame = 1
Query:    1 FDEGTNMALVAKGTTLNPGQIIDPLVHYVGQTAVRFVDQGEAPRLKDLAPFINRTTRQVTSSNGQLKLDYGRGLLTINAPMAQGVMGDMKQVASTATRDLVIASQMDLGAVVAVALDGQPLTTSGKILVQVMSEEQPLGFETAPYPDLAGFLSIKKAGAPTWSLKSISGSIQFTRPDAAQL 543
            FDE   +A V  G  + PGQ +DPL+H+ G+T VRFVD        D A  I+   + VTS+  +LKLDYGRGLLTINAP A G+ G++K   +T      IAS +DLG ++AV+LD QPL+TS KILVQ MSEE+  GF T P  +  G   I   G   W ++S+SG+++F RPDAA L
Sbjct:  512 FDE-LRLADVPSGVDIKPGQRLDPLLHFAGRTRVRFVDGPGGFLGCDSASLIDHKGQTVTSTTRELKLDYGRGLLTINAPQAAGLSGNLKSAGATKLGAFEIASDLDLGHILAVSLDDQPLSTSKKILVQAMSEERATGFRTEPAEE--GTYKITDIGRDPWQVRSLSGTVRFHRPDAATL 689          
BLAST of mRNA_P-wetherbeei_contig52229.1.1 vs. uniprot
Match: A0A2T6DIN2_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium LW23 TaxID=2161867 RepID=A0A2T6DIN2_9BACT)

HSP 1 Score: 152 bits (385), Expect = 1.400e-39
Identity = 80/160 (50.00%), Postives = 104/160 (65.00%), Query Frame = 1
Query:   64 IDPLVHYVGQTAVRFVDQGEAPRLKDLAPFINRTTRQVTSSNGQLKLDYGRGLLTINAPMAQGVMGDMKQVASTATRDLVIASQMDLGAVVAVALDGQPLTTSGKILVQVMSEEQPLGFETAPYPDLAGFLSIKKAGAPTWSLKSISGSIQFTRPDAAQL 543
            +DPL+H VG+  V   D G     KDLAP+IN     V SS G+L LDYG+G L+INAP AQG +G++K   +   RDL I S +DL ++VAVALDG+PL TSG+ILVQ M+EE+P G+   P     G + I   G   W ++ I G+I+F RPDAAQL
Sbjct:  722 VDPLIHLVGRANVSISDAGGPTVRKDLAPYINHAANTVASSTGELLLDYGKGTLSINAPAAQGCVGNLKDSGTLELRDLSITSTLDLISIVAVALDGKPLATSGRILVQAMTEEKPSGWAVEPAG--VGTMRITSIGQDPWLIREIQGAIKFRRPDAAQL 879          
BLAST of mRNA_P-wetherbeei_contig52229.1.1 vs. uniprot
Match: A0A3L7V3C6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7V3C6_9BACT)

HSP 1 Score: 149 bits (377), Expect = 1.120e-38
Identity = 83/195 (42.56%), Postives = 114/195 (58.46%), Query Frame = 1
Query:    1 FDEGTNMALVAKGTTLNPGQIIDPLVHYVGQTAVRF--------------VDQGEAPRLKDLAPFINRTTRQVTSSNGQLKLDYGRGLLTINAPMAQGVMGDMKQVASTATRDLVIASQMDLGAVVAVALDGQPLTTSGKILVQVMSEEQPLGFETAPYPDLAGFLSIKKAGAPTWSLKSISGSIQFTRPDAAQL 543
            FDE   +  V +GTTL PGQ IDPL+HYVG+T V F              V      +L+ LAPFI+   + V+S  G+LKLD+GRG+LTINAP AQG  GD+K        D+ ++  +D+  VV V+LDGQPL TS ++L+Q+M+EE+P GF   P  D      I   G   W ++ + G ++  R DAA+L
Sbjct:  495 FDE-LRLKDVPQGTTLKPGQRIDPLIHYVGRTRVTFRSSVAPRQESRTTTVSPSPTVKLQPLAPFIDHVKKLVSSQTGELKLDWGRGVLTINAPAAQGASGDLKSAGEIKLADMTLSVPLDVAHVVVVSLDGQPLATSKRMLLQLMTEEKPTGFRAEPLGDRRH--RITSIGENPWQVRKLEGVVRLRRADAAKL 686          
BLAST of mRNA_P-wetherbeei_contig52229.1.1 vs. uniprot
Match: A0A7V1RC19_9BACT (Uncharacterized protein n=1 Tax=Chthonomonadales bacterium TaxID=2282151 RepID=A0A7V1RC19_9BACT)

HSP 1 Score: 149 bits (376), Expect = 1.630e-38
Identity = 80/164 (48.78%), Postives = 111/164 (67.68%), Query Frame = 1
Query:   52 PGQIIDPLVHYVGQTAVRFVDQGEAPRLKDLAPFINRTTRQVTSSNGQLKLDYGRGLLTINAPMAQGVMGDMKQVASTATRDLVIASQMDLGAVVAVALDGQPLTTSGKILVQVMSEEQPLGFETAPYPDLAGFLSIKKAGAPTWSLKSISGSIQFTRPDAAQL 543
            PG +IDPL+H+ G+T VRF D     R+ DL PF++R  ++V S++GQL+LDYGRG L I+AP AQG  G++  + +  T DL I+S MDLG VVAV+LDG+PL  SG+IL+QVMSEEQ  GF T       G   I+  G   W ++++ G ++F R DA++L
Sbjct:  540 PG-LIDPLIHFAGRTRVRFADGPS--RVADLRPFVDRAGQKVRSTHGQLRLDYGRGALVIDAPAAQGASGNLAALGTVRTADLTISSSMDLGHVVAVSLDGRPLEKSGRILLQVMSEEQNTGFATEAAE--RGRRRIRSIGRDPWQVRAMEGVVRFRRADASRL 698          
BLAST of mRNA_P-wetherbeei_contig52229.1.1 vs. uniprot
Match: A0A4V0XMS2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetia bacterium TaxID=2052181 RepID=A0A4V0XMS2_9BACT)

HSP 1 Score: 149 bits (377), Expect = 1.670e-38
Identity = 83/195 (42.56%), Postives = 114/195 (58.46%), Query Frame = 1
Query:    1 FDEGTNMALVAKGTTLNPGQIIDPLVHYVGQTAVRF--------------VDQGEAPRLKDLAPFINRTTRQVTSSNGQLKLDYGRGLLTINAPMAQGVMGDMKQVASTATRDLVIASQMDLGAVVAVALDGQPLTTSGKILVQVMSEEQPLGFETAPYPDLAGFLSIKKAGAPTWSLKSISGSIQFTRPDAAQL 543
            FDE   +  V +GTTL PGQ IDPL+HYVG+T V F              V      +L+ LAPFI+   + V+S  G+LKLD+GRG+LTINAP AQG  GD+K        D+ ++  +D+  VV V+LDGQPL TS ++L+Q+M+EE+P GF   P  D      I   G   W ++ + G ++  R DAA+L
Sbjct:  677 FDE-LRLKDVPQGTTLKPGQRIDPLIHYVGRTRVTFRSSVAPRQESRTTTVSPSPTVKLQPLAPFIDHVKKLVSSQTGELKLDWGRGVLTINAPAAQGASGDLKSAGEIKLADMTLSVPLDVAHVVVVSLDGQPLATSKRMLLQLMTEEKPTGFRAEPLGDRRH--RITSIGENPWQVRKLEGVVRLRRADAAKL 868          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52229.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C3TT19_9BACT8.690e-4448.07Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
UPI00199FA9D41.290e-4249.42Uncharacterized protein n=1 Tax=Chthonomonadaceae ... [more]
A0A7C4LSC5_9BACT1.450e-4246.41Uncharacterized protein n=1 Tax=Verrucomicrobia su... [more]
A0A556QRN0_9BACT1.760e-4150.00Uncharacterized protein n=1 Tax=Rariglobus hederic... [more]
A0A7X7TEY9_9BACT2.360e-4145.86Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A142WWA5_9PLAN2.690e-4148.62Uncharacterized protein n=1 Tax=Planctomyces sp. S... [more]
A0A2T6DIN2_9BACT1.400e-3950.00Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A3L7V3C6_9BACT1.120e-3842.56Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A7V1RC19_9BACT1.630e-3848.78Uncharacterized protein n=1 Tax=Chthonomonadales b... [more]
A0A4V0XMS2_9BACT1.670e-3842.56Uncharacterized protein n=1 Tax=Planctomycetia bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52229contigP-wetherbeei_contig52229:5..547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1396141.BATP01000030_gene3702
Model size543
Max annot lvl203494|Verrucomicrobiae
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.85e-37
EggNOG OGsCOG3934@1|root,COG5520@1|root,COG3934@2|Bacteria,COG5520@2|Bacteria,46Z5X@74201|Verrucomicrobia,2IWQJ@203494|Verrucomicrobiae
DescriptionBelongs to the glycosyl hydrolase 5 (cellulase A) family
Cds size525
COG categoryG
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186783.1503959-UTR-P-wetherbeei_contig52229:4..221683186783.1503959-UTR-P-wetherbeei_contig52229:4..22Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52229 5..22 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186783.1691785-CDS-P-wetherbeei_contig52229:22..5471683186783.1691785-CDS-P-wetherbeei_contig52229:22..547Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52229 23..547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52229.1.1prot_P-wetherbeei_contig52229.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52229 23..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52229.1.1

>prot_P-wetherbeei_contig52229.1.1 ID=prot_P-wetherbeei_contig52229.1.1|Name=mRNA_P-wetherbeei_contig52229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
MALVAKGTTLNPGQIIDPLVHYVGQTAVRFVDQGEAPRLKDLAPFINRTT
RQVTSSNGQLKLDYGRGLLTINAPMAQGVMGDMKQVASTATRDLVIASQM
DLGAVVAVALDGQPLTTSGKILVQVMSEEQPLGFETAPYPDLAGFLSIKK
AGAPTWSLKSISGSIQFTRPDAAQL
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mRNA from alignment at P-wetherbeei_contig52229:5..547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52229.1.1 ID=mRNA_P-wetherbeei_contig52229.1.1|Name=mRNA_P-wetherbeei_contig52229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig52229:5..547+ (Phaeothamnion wetherbeei SAG_119_79)
TTTGACGAGGGAACCAACATGGCTTTGGTGGCCAAAGGGACCACGTTGAA CCCAGGCCAGATCATTGACCCGCTGGTTCACTACGTCGGGCAGACCGCTG TTCGATTCGTGGACCAGGGCGAAGCCCCCAGGCTCAAGGACCTGGCCCCG TTCATCAACCGCACGACCAGGCAGGTCACCAGCAGCAACGGCCAGCTCAA GCTGGACTACGGGCGCGGCCTGCTGACCATCAACGCGCCGATGGCCCAGG GAGTGATGGGCGACATGAAGCAGGTGGCCTCAACAGCGACCCGCGACCTG GTCATCGCGTCGCAGATGGATCTTGGGGCGGTCGTCGCGGTTGCGCTCGA CGGCCAGCCGCTGACCACCTCGGGCAAGATCCTGGTGCAGGTGATGTCTG AGGAGCAGCCGCTCGGGTTCGAGACCGCGCCCTATCCCGACCTGGCCGGA TTCCTCTCGATCAAGAAGGCGGGGGCTCCCACCTGGTCACTGAAATCCAT CTCAGGTTCGATCCAGTTCACCCGACCCGATGCGGCCCAGCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52229:5..547+

>mRNA_P-wetherbeei_contig52229.1.1 ID=mRNA_P-wetherbeei_contig52229.1.1|Name=mRNA_P-wetherbeei_contig52229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig52229:5..547+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTTTGGTGGCCAAAGGGACCACGTTGAACCCAGGCCAGATCATTGA
CCCGCTGGTTCACTACGTCGGGCAGACCGCTGTTCGATTCGTGGACCAGG
GCGAAGCCCCCAGGCTCAAGGACCTGGCCCCGTTCATCAACCGCACGACC
AGGCAGGTCACCAGCAGCAACGGCCAGCTCAAGCTGGACTACGGGCGCGG
CCTGCTGACCATCAACGCGCCGATGGCCCAGGGAGTGATGGGCGACATGA
AGCAGGTGGCCTCAACAGCGACCCGCGACCTGGTCATCGCGTCGCAGATG
GATCTTGGGGCGGTCGTCGCGGTTGCGCTCGACGGCCAGCCGCTGACCAC
CTCGGGCAAGATCCTGGTGCAGGTGATGTCTGAGGAGCAGCCGCTCGGGT
TCGAGACCGCGCCCTATCCCGACCTGGCCGGATTCCTCTCGATCAAGAAG
GCGGGGGCTCCCACCTGGTCACTGAAATCCATCTCAGGTTCGATCCAGTT
CACCCGACCCGATGCGGCCCAGCTT
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