mRNA_P-wetherbeei_contig52204.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52204.3.1
Unique NamemRNA_P-wetherbeei_contig52204.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52204.3.1 vs. uniprot
Match: A0A850I7E5_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. 2S1 TaxID=1404429 RepID=A0A850I7E5_9BRAD)

HSP 1 Score: 50.1 bits (118), Expect = 1.580e-6
Identity = 33/65 (50.77%), Postives = 36/65 (55.38%), Query Frame = -3 
Query:    1 TKEGVGETSGQTAGSTFGRAVRQK----KQAFFVRCGIFAPQFHR--AQKARLKSGPDVFADALV 177
            TKEGVGETSGQTAGS FG     K    ++      G     F     + A LKSGPDVFAD LV
Sbjct:    2 TKEGVGETSGQTAGSNFGEGNLPKTGPAEETEISSFGAEPAWFRNFTGENAELKSGPDVFADPLV 66
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BLAST of mRNA_P-wetherbeei_contig52204.3.1 vs. uniprot
Match: A0A5E8VDY6_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. LVM 105 TaxID=2341115 RepID=A0A5E8VDY6_9BRAD)

HSP 1 Score: 47.8 bits (112), Expect = 2.310e-5
Identity = 27/51 (52.94%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:    1 NEGVGEHVRTRLQPGFLGPVKLRS---KDSAPNEESLFLLPDRSPESRSSR 144
            NEGVGEHVRTR         ++     + +APNEE+LFLLPDR  E RS R
Sbjct:   65 NEGVGEHVRTRFHVDPKAACEIAEPLFRRTAPNEENLFLLPDRQSE-RSDR 114
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52204.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A850I7E5_9BRAD1.580e-650.77Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
A0A5E8VDY6_9BRAD2.310e-552.94Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52204contigP-wetherbeei_contig52204:348..545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size182
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186783.05938-CDS-P-wetherbeei_contig52204:347..4661683186783.05938-CDS-P-wetherbeei_contig52204:347..466Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52204 348..466 +
1683186783.0680459-CDS-P-wetherbeei_contig52204:482..5161683186783.0680459-CDS-P-wetherbeei_contig52204:482..516Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52204 483..516 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186783.0762901-UTR-P-wetherbeei_contig52204:516..5451683186783.0762901-UTR-P-wetherbeei_contig52204:516..545Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52204 517..545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52204.3.1prot_P-wetherbeei_contig52204.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52204 348..516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52204.3.1

>prot_P-wetherbeei_contig52204.3.1 ID=prot_P-wetherbeei_contig52204.3.1|Name=mRNA_P-wetherbeei_contig52204.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=51bp
NEGVGEHVRTRLQPGFLGPVKLRSKDSAPNEESLFLLPDRSPESRSSRLT
*
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mRNA from alignment at P-wetherbeei_contig52204:348..545+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52204.3.1 ID=mRNA_P-wetherbeei_contig52204.3.1|Name=mRNA_P-wetherbeei_contig52204.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig52204:348..545+ (Phaeothamnion wetherbeei SAG_119_79)
AACGAGGGCGTCGGCGAACACGTCAGGACCAGACTTCAGCCGGGCTTTTT
GGGCCCGGTGAAATTGCGGAGCAAAGATTCCGCACCGAACGAAGAAAGCT
TGTTTCTTCTGCCGGACCGGTTTTGGAAAAGCGAGCTCTCCCGAAAGTCG
ATCCAGCCGTTTGACCTGATGTCTCGCCGACACCCTCTTTCGTCGACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52204:348..545+

>mRNA_P-wetherbeei_contig52204.3.1 ID=mRNA_P-wetherbeei_contig52204.3.1|Name=mRNA_P-wetherbeei_contig52204.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig52204:348..545+ (Phaeothamnion wetherbeei SAG_119_79)
AACGAGGGCGTCGGCGAACACGTCAGGACCAGACTTCAGCCGGGCTTTTT
GGGCCCGGTGAAATTGCGGAGCAAAGATTCCGCACCGAACGAAGAAAGCT
TGTTTCTTCTGCCGGACCGCTCTCCCGAAAGTCGATCCAGCCGTTTGACC
TGA
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