mRNA_P-wetherbeei_contig5220.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5220.2.1
Unique NamemRNA_P-wetherbeei_contig5220.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5220.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5220contigP-wetherbeei_contig5220:2226..2969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size539
Hectar predicted targeting categoryother localisation
Exons2
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186782.9323983-UTR-P-wetherbeei_contig5220:2225..23311683186782.9323983-UTR-P-wetherbeei_contig5220:2225..2331Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5220 2226..2331 -
1683186782.9425054-UTR-P-wetherbeei_contig5220:2536..26361683186782.9425054-UTR-P-wetherbeei_contig5220:2536..2636Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5220 2537..2636 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186782.951784-CDS-P-wetherbeei_contig5220:2636..29691683186782.951784-CDS-P-wetherbeei_contig5220:2636..2969Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5220 2637..2969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5220.2.1prot_P-wetherbeei_contig5220.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5220 2637..2969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5220.2.1

>prot_P-wetherbeei_contig5220.2.1 ID=prot_P-wetherbeei_contig5220.2.1|Name=mRNA_P-wetherbeei_contig5220.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
QRKQPAAPVSNSGPLGHQQGRRAAGDCRHRQRGDELSTDGLSDVSDAADT
DANDAVGSALVGPSARTPPASDFSVCYFPLSSAIRVLLFAVHCQSKRSTC
PNWTVLTASM*
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mRNA from alignment at P-wetherbeei_contig5220:2226..2969-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5220.2.1 ID=mRNA_P-wetherbeei_contig5220.2.1|Name=mRNA_P-wetherbeei_contig5220.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=744bp|location=Sequence derived from alignment at P-wetherbeei_contig5220:2226..2969- (Phaeothamnion wetherbeei SAG_119_79)
CAGCGGAAGCAGCCGGCCGCGCCGGTTTCAAATTCTGGACCTCTCGGACA
TCAGCAAGGACGTCGGGCAGCAGGAGATTGTCGCCATCGGCAGCGAGGCG
ACGAACTGTCCACTGATGGCCTCTCCGATGTTTCCGACGCAGCCGATACC
GACGCCAACGACGCGGTTGGCTCGGCATTGGTGGGGCCCAGCGCGAGGAC
GCCTCCTGCCAGCGACTTTTCGGTGTGCTACTTTCCGCTTTCTTCTGCAA
TTCGTGTGTTGCTTTTTGCCGTTCACTGTCAGTCCAAGAGATCAACATGC
CCCAACTGGACAGTCTTGACTGCCAGCATGTGAGTGTGGTCCCGGTCCCC
GGCGAGCAACGCACGAGATGACAGCAAGCTGTGTCGGAGCTCGACGCGAC
AGGAATCGTCGAGAGCGTCTCCGCAGCATCACGGTGCGTGCGGGTGCGGG
CACGTTCATAATTAAGGTGGAAAAATTGGGCGATTGTTGCTACTTCCTCG
GAGAATTTAGCTTCTCTCCCCTCCTCTTGTTTCCTGTTACGTACGACTCA
CCTCAATCCCTATTCCCATATGGTTCGGTCGCACTATTCTGTACCACACG
GCGTCTCCCCGTCTGCTCCGTTTCCTCTCCCCAAACAGGTTTACTCGCCG
GGCAGCAGTCACGTCGATGTCCTCCATTGTCCAGTTCCTGTCCGGTACCG
GCGCTTCCTCGGACGTTGCCGCCGCCGCACCTGCCGCGTTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5220:2226..2969-

>mRNA_P-wetherbeei_contig5220.2.1 ID=mRNA_P-wetherbeei_contig5220.2.1|Name=mRNA_P-wetherbeei_contig5220.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig5220:2226..2969- (Phaeothamnion wetherbeei SAG_119_79)
CAGCGGAAGCAGCCGGCCGCGCCGGTTTCAAATTCTGGACCTCTCGGACA
TCAGCAAGGACGTCGGGCAGCAGGAGATTGTCGCCATCGGCAGCGAGGCG
ACGAACTGTCCACTGATGGCCTCTCCGATGTTTCCGACGCAGCCGATACC
GACGCCAACGACGCGGTTGGCTCGGCATTGGTGGGGCCCAGCGCGAGGAC
GCCTCCTGCCAGCGACTTTTCGGTGTGCTACTTTCCGCTTTCTTCTGCAA
TTCGTGTGTTGCTTTTTGCCGTTCACTGTCAGTCCAAGAGATCAACATGC
CCCAACTGGACAGTCTTGACTGCCAGCATGTGA
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