mRNA_P-wetherbeei_contig52184.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52184.2.1
Unique NamemRNA_P-wetherbeei_contig52184.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52184.2.1 vs. uniprot
Match: A0A1H8PUT9_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium URHD0017 TaxID=1380357 RepID=A0A1H8PUT9_9PROT)

HSP 1 Score: 80.5 bits (197), Expect = 9.020e-19
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 PAFMLIEGPIVRPLPPEATRVVTREFWLVQPWVIVTIVMXXXXALVIPGLILDLNRGF 174
            PAFM IEG I RPLP EAT V TR+FWLVQPWVIVT+ +    AL +PGL++DL RGF
Sbjct:    9 PAFMKIEGRIARPLPSEATNVTTRKFWLVQPWVIVTLCLIIMAALSVPGLLMDLYRGF 66
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52184.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1H8PUT9_9PROT9.020e-1967.24Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52184contigP-wetherbeei_contig52184:190..366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size177
Hectar predicted targeting categorysignal anchor
Exons1
Cds size168
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186782.6850016-UTR-P-wetherbeei_contig52184:189..1981683186782.6850016-UTR-P-wetherbeei_contig52184:189..198Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52184 190..198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186782.6952274-CDS-P-wetherbeei_contig52184:198..3661683186782.6952274-CDS-P-wetherbeei_contig52184:198..366Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52184 199..366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52184.2.1prot_P-wetherbeei_contig52184.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52184 199..366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52184.2.1

>prot_P-wetherbeei_contig52184.2.1 ID=prot_P-wetherbeei_contig52184.2.1|Name=mRNA_P-wetherbeei_contig52184.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=56bp
MLIEGPIVRPLPPEATRVVTREFWLVQPWVIVTIVMVVITALVIPGLILD
LNRGF*
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mRNA from alignment at P-wetherbeei_contig52184:190..366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52184.2.1 ID=mRNA_P-wetherbeei_contig52184.2.1|Name=mRNA_P-wetherbeei_contig52184.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig52184:190..366+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGCCTTCATGCTGATCGAAGGCCCGATCGTGCGGCCCCTGCCGCCGGA
GGCGACCCGGGTCGTCACGCGCGAATTCTGGCTGGTGCAGCCCTGGGTGA
TCGTGACCATCGTCATGGTCGTCATCACCGCCCTGGTGATCCCCGGCCTG
ATCCTGGATCTTAATCGCGGTTTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52184:190..366+

>mRNA_P-wetherbeei_contig52184.2.1 ID=mRNA_P-wetherbeei_contig52184.2.1|Name=mRNA_P-wetherbeei_contig52184.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig52184:190..366+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGATCGAAGGCCCGATCGTGCGGCCCCTGCCGCCGGAGGCGACCCG
GGTCGTCACGCGCGAATTCTGGCTGGTGCAGCCCTGGGTGATCGTGACCA
TCGTCATGGTCGTCATCACCGCCCTGGTGATCCCCGGCCTGATCCTGGAT
CTTAATCGCGGTTTCTGA
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