mRNA_P-wetherbeei_contig52140.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52140.1.1
Unique NamemRNA_P-wetherbeei_contig52140.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52140.1.1 vs. uniprot
Match: A0A2D9LPR3_9CHLR (DNA repair protein RecO n=3 Tax=root TaxID=1 RepID=A0A2D9LPR3_9CHLR)

HSP 1 Score: 65.5 bits (158), Expect = 6.670e-10
Identity = 43/147 (29.25%), Postives = 72/147 (48.98%), Query Frame = 1
Query:    1 RLFSSKALVLKRRPMGESDAHIVLLCPG-GRLDCVVTKALR-SQRWGALIEPLSLLEGQFSRGKSFVYLREATMLTGFSNVRENLDLLGIAGYWIDLCGNVIQEHQESALLFRALVWALKVLGDGAPRGATNFWFELHLLNSLGAGP 435
            R + ++A+VLK RPMGESD  I       GR+  +   A R   R G  +EPL+ ++   SRG+ F  + E+  + GF+ ++ +L+ + +A Y  +L  +   +   +  L+  +   L  L           +FEL LL  +G  P
Sbjct:    5 RNYQTQAIVLKYRPMGESDRLITFFSSSFGRITGIARGARRPGSRLGGSLEPLNFVQISLSRGRLFETVSESVTIKGFNRIKSDLNRVALALYLAELTDSFADDWSPNQKLYDLVEDTLSALDKEEHSEYLIHFFELRLLKFIGYEP 151          
BLAST of mRNA_P-wetherbeei_contig52140.1.1 vs. uniprot
Match: A0A6I1QQU1_9CHLR (DNA repair protein RecO n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I1QQU1_9CHLR)

HSP 1 Score: 64.3 bits (155), Expect = 1.790e-9
Identity = 46/150 (30.67%), Postives = 77/150 (51.33%), Query Frame = 1
Query:    1 RLFSSKALVLKRRPMGESDAHIVLLCPG-GRLDCVVTKALRSQ-RWGALIEPLSLLEGQFSRGKSFVYLREATMLTGFSNVRENLDLLGIAGYWIDLCGNVIQEHQESALLFRALVWALK-VLGDGAPRGATNFWFELHLLNSLGAGPSL 441
            R +S++A+VL++R +G++D  I L  P  GR++ V     RS+ R    +E LS       RG+S   + +A ++ G+ ++RE+L L+    Y  +L         +S   FR LV  L+ +    AP      +FE+ LL+ LG  P +
Sbjct:    5 RSYSTEAIVLRQRRLGDADKIITLFTPDYGRIEAVAKGVRRSKSRLAGHVEVLSHCNLLLHRGRSLDVITQAQLIGGYRSLREDLSLVSRGLYAAELVERFTDVSADSLPTFRLLVDVLQWMTARTAPPDVVLRYFEMRLLDELGYRPQV 154          
BLAST of mRNA_P-wetherbeei_contig52140.1.1 vs. uniprot
Match: A0A4Q6ENY7_9PROT (DNA repair protein RecO n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6ENY7_9PROT)

HSP 1 Score: 63.2 bits (152), Expect = 6.050e-9
Identity = 42/148 (28.38%), Postives = 69/148 (46.62%), Query Frame = 1
Query:    4 LFSSKALVLKRRPMGESDAHIVLLCPG-GRLDCVVTKALRSQRWGALIEPLSLLEGQFSRGKS-FVYLREATMLTGFSNVRENLDLLGIAGYWIDLCGNVIQEHQESALLFRALVWALKVLGDGAPRGATNFWFELHLLNSLGAGPSL 441
            L    A+VL+  P  E D  +  L    GR+  V   ++ S+R+G  ++  +  +  +  G    V+L EA +   F  +RE L+ +  AGY++DLC  + +E+     +F  L   L +L +          FE+ LL  LG  P L
Sbjct:    4 LTEDMAIVLRASPFKERDKLVTFLTENHGRITGVARNSIHSKRFGGTLDLFACSKISYKEGSGELVWLDEANLRRDFLKIREKLENISAAGYFVDLCLRLTEENHPVREVFMLLAHYLYLLEEHTATFEIVRSFEIKLLERLGWAPVL 151          
BLAST of mRNA_P-wetherbeei_contig52140.1.1 vs. uniprot
Match: A0A2N2NRG2_9CHLR (DNA repair protein RecO n=2 Tax=unclassified Chloroflexi TaxID=189774 RepID=A0A2N2NRG2_9CHLR)

HSP 1 Score: 60.1 bits (144), Expect = 5.770e-8
Identity = 41/143 (28.67%), Postives = 70/143 (48.95%), Query Frame = 1
Query:   19 ALVLKRRPMGESDAHIVLLC-PGGRLDCVVTKALRS-QRWGALIEPLSLLEGQFSRGKSFVYLREATMLTGFSNVRENLDLLGIAGYWIDLCGNVIQEHQESALLFRALVWALKVLGDGAPRGATNFWFELHLLNSLGAGPSL 441
            AL+L+ +  GE+D  + +     G+L  V   A ++  R    +EP      Q ++G+    + +A  +  F  +R++L L+G+A Y I+L      E   +A L+R  V  L+ L  G P      ++E+ LL+ LG  P L
Sbjct:   13 ALILRHQRWGEADRLLTIFTREHGKLRIVAKGARKTTSRKAGHLEPFMRSTLQLAQGRDLWIVTQAETINAFLPIRDDLQLMGVASYVIELLDKFTYEDGINAPLYRLAVETLERLSTGDPVFVVLRYYEMRLLDILGYRPQL 155          
BLAST of mRNA_P-wetherbeei_contig52140.1.1 vs. uniprot
Match: A0A3A6NPG4_9FIRM (DNA repair protein RecO n=1 Tax=Dethiobacter sp. TaxID=2093370 RepID=A0A3A6NPG4_9FIRM)

HSP 1 Score: 57.8 bits (138), Expect = 4.230e-7
Identity = 43/148 (29.05%), Postives = 70/148 (47.30%), Query Frame = 1
Query:    1 RLFSSKALVLKRRPMGESDAHIVLLC-PGGRLDCVVTKALR-SQRWGALIEPLSLLEGQFSRGKSFVYLREATMLTGFSNVRENLDLLGIAGYWIDLCGNVIQEHQESALLFRALVWALKVLGDG-APRGATNFWFELHLLNSLGAGP 435
            +LF ++ALVL+ RP+GE D  + L     G+L  V   A R   +  A ++  +       RGKS   + +  +   F  +REN+       Y+ +L   +++E +    +F  L+   + L D  A R     +FEL LL+ LG  P
Sbjct:    9 KLFKTRALVLRSRPLGERDRLLSLFTWEKGKLGAVAPGARRIKSKLAAGVDYFTCASFLLHRGKSLCTVTQLEVEFAFRKIRENIKDYTYGMYFCELVEKLVEEGEPHPAIFNLLLECWRCLDDSSADREILARYFELKLLSLLGYHP 156          
BLAST of mRNA_P-wetherbeei_contig52140.1.1 vs. uniprot
Match: A0A2T2RK06_9ACTN (DNA repair protein RecO n=1 Tax=Actinobacteria bacterium QS_5_72_10 TaxID=1919085 RepID=A0A2T2RK06_9ACTN)

HSP 1 Score: 57.0 bits (136), Expect = 6.690e-7
Identity = 44/148 (29.73%), Postives = 69/148 (46.62%), Query Frame = 1
Query:    7 FSSKALVLKRRPMGESDAHIVLLCPGGRLDCVVTKALR--SQRWGALIEPLSLLEGQFSRGKSFVYLREATMLTGFSNVRENLDLLGIAGYWIDLCGNVIQEHQESALLFRALVWALKVLGDGAPRGATNF-WFELHLLNSLGAGPSL 441
            +  +A+VL+   +GE+D    LL  G      V K +R    R+GA +EP SL++ Q    KS   + +A +L  F+ VR + +    A   ++    V QE + +A L   L   L  L +  P  AT    + L L +  G  P+L
Sbjct:    4 YREQAIVLRTHKLGETDRICNLLSAGRGKVRAVAKGVRRPGSRFGARLEPYSLVDLQLHSAKSLDVINQAELLVSFAGVRADWERSACAQTMVEGADRVAQEGERNASLLLLLRDGLVALDNDPPEPATVLDAYLLRLASVAGYHPAL 151          
BLAST of mRNA_P-wetherbeei_contig52140.1.1 vs. uniprot
Match: A0A5N9GN78_9CHLR (DNA repair protein RecO n=1 Tax=SAR202 cluster bacterium TaxID=2030829 RepID=A0A5N9GN78_9CHLR)

HSP 1 Score: 55.5 bits (132), Expect = 2.790e-6
Identity = 38/147 (25.85%), Postives = 70/147 (47.62%), Query Frame = 1
Query:    1 RLFSSKALVLKRRPMGESDAHIVLLCPG-GRLDCVVTKALR-SQRWGALIEPLSLLEGQFSRGKSFVYLREATMLTGFSNVRENLDLLGIAGYWIDLCGNVIQEHQESALLFRALVWALKVLGDGAPRGATNFWFELHLLNSLGAGP 435
            R + ++A+VLK RP+GESD  I       GR+  +     R   R G  +EPL++++   +RG+ F  + E +++  F  ++ +L+ + +A Y  +L  +   +   +  L+  +   L              +FEL LL  +G  P
Sbjct:    6 RNYQTEAIVLKYRPIGESDRLITFFSSTLGRITGIARGVRRPGSRLGGSLEPLNIVQVSLARGRLFETVSETSVIKDFDGIKSDLNKVALALYVAELTDSFADDWSSNQKLYDLVGRTLADFNKNEYPLYLIHFFELKLLKFVGYDP 152          
BLAST of mRNA_P-wetherbeei_contig52140.1.1 vs. uniprot
Match: A0A7V9B7A2_9CHLR (DNA repair protein RecO n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9B7A2_9CHLR)

HSP 1 Score: 55.5 bits (132), Expect = 2.940e-6
Identity = 41/144 (28.47%), Postives = 70/144 (48.61%), Query Frame = 1
Query:    1 RLFSSKALVLKRRPMGESDAHI-VLLCPGGRLDCVVTKALRSQ-RWGALIEPLSLLEGQFSRGKSFVYLREATMLTGFSNVRENLDLLGIAGYWIDLCGNVIQEHQESALLFRALVWALKVLGDGAPRGATNFWFELHLLNSLG 426
            RL+S++A+VL RR +GESD    V     G+L  +  +A RS  R G  ++ LS +     RG++   ++    +     +R +LD  G A Y  +L   + ++ Q +  L+  L   L +L +         +FE  LL++ G
Sbjct:    8 RLYSTEAIVLARRNLGESDRICDVYSVRYGKLSVIAKRARRSDNRDGRSLDLLSRVLIHLYRGRNLDIVKSVEPVASHDGLRADLDAYGHACYLAELVRAMTEDRQPNEQLYSLLAQCLTLLSERVDPWPVTRYFEYALLDASG 151          
BLAST of mRNA_P-wetherbeei_contig52140.1.1 vs. uniprot
Match: A0A7W0A487_9CHLR (DNA repair protein RecO n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0A487_9CHLR)

HSP 1 Score: 55.5 bits (132), Expect = 3.080e-6
Identity = 39/144 (27.08%), Postives = 70/144 (48.61%), Query Frame = 1
Query:    1 RLFSSKALVLKRRPMGESDA-HIVLLCPGGRLDCVVTKALR-SQRWGALIEPLSLLEGQFSRGKSFVYLREATMLTGFSNVRENLDLLGIAGYWIDLCGNVIQEHQESALLFRALVWALKVLGDGAPRGATNFWFELHLLNSLG 426
            RL+S++A+VL RR +GESD  + +     G+   +  +A R   R G  ++ LS +     RG++   ++    +     +R +LD  G A Y  +L   + ++ Q +  L+  L   L +L +G        +FE  LL++ G
Sbjct:   32 RLYSTEAIVLARRNLGESDRIYDIYSVRYGKFSVIAKRARRPDNRDGRSLDLLSRVLIHLYRGRNLDIVKSVEPVATHDGLRADLDAYGHACYLAELVRAMTEDRQPNEQLYALLAQCLTLLSEGVDPWPVTRYFEYALLDASG 175          
BLAST of mRNA_P-wetherbeei_contig52140.1.1 vs. uniprot
Match: A0A847IE08_9ACTN (DNA repair protein RecO (Fragment) n=1 Tax=Gordonia sp. TaxID=84139 RepID=A0A847IE08_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 1.080e-5
Identity = 38/144 (26.39%), Postives = 68/144 (47.22%), Query Frame = 1
Query:    1 RLFSSKALVLKRRPMGESDA-HIVLLCPGGRLDCVVTKALRSQ-RWGALIEPLSLLEGQFSRGKSFVYLREATMLTGFSNVRENLDLLGIAGYWIDLCGNVIQEHQESALLFRALVWALKVLGDGAPRGATNFWFELHLLNSLG 426
            RL+S++A+VL RR +GE+D  + +     GR   +   A +++ R G  ++ L+ +     RG+S   +R    +     +R+ L     A Y  DL   + QE + +  ++  L   L +L DG    +   +FE   L + G
Sbjct:   34 RLYSTEAIVLARRNLGEADRIYDIFSVRSGRKSIIAKGARKAESRNGRSLDLLNRVVVHLYRGRSLDGVRGVETVATHPGLRDGLQAFAAASYLADLVRVMTQEDEPNERVYALLAETLALLSDGVDPWSLTRYFEYAFLEASG 177          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52140.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A2D9LPR3_9CHLR6.670e-1029.25DNA repair protein RecO n=3 Tax=root TaxID=1 RepID... [more]
A0A6I1QQU1_9CHLR1.790e-930.67DNA repair protein RecO n=1 Tax=Dehalococcoidia ba... [more]
A0A4Q6ENY7_9PROT6.050e-928.38DNA repair protein RecO n=2 Tax=Proteobacteria bac... [more]
A0A2N2NRG2_9CHLR5.770e-828.67DNA repair protein RecO n=2 Tax=unclassified Chlor... [more]
A0A3A6NPG4_9FIRM4.230e-729.05DNA repair protein RecO n=1 Tax=Dethiobacter sp. T... [more]
A0A2T2RK06_9ACTN6.690e-729.73DNA repair protein RecO n=1 Tax=Actinobacteria bac... [more]
A0A5N9GN78_9CHLR2.790e-625.85DNA repair protein RecO n=1 Tax=SAR202 cluster bac... [more]
A0A7V9B7A2_9CHLR2.940e-628.47DNA repair protein RecO n=1 Tax=Chloroflexia bacte... [more]
A0A7W0A487_9CHLR3.080e-627.08DNA repair protein RecO n=1 Tax=Chloroflexia bacte... [more]
A0A847IE08_9ACTN1.080e-526.39DNA repair protein RecO (Fragment) n=1 Tax=Gordoni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52140contigP-wetherbeei_contig52140:2..445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog357808.RoseRS_1301
Preferred namerecO
PFAMsRecO_C,RecO_N
Model size444
Max annot lvl32061|Chloroflexia
KEGG koko:K03584
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.53e-11
EggNOG OGsCOG1381@1|root,COG1381@2|Bacteria,2G6N7@200795|Chloroflexi,375M0@32061|Chloroflexia
DescriptionInvolved in DNA repair and RecF pathway recombination
Cds size444
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186781.9882405-CDS-P-wetherbeei_contig52140:1..4451683186781.9882405-CDS-P-wetherbeei_contig52140:1..445Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52140 2..445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52140.1.1prot_P-wetherbeei_contig52140.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52140 2..445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52140.1.1

>prot_P-wetherbeei_contig52140.1.1 ID=prot_P-wetherbeei_contig52140.1.1|Name=mRNA_P-wetherbeei_contig52140.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
RLFSSKALVLKRRPMGESDAHIVLLCPGGRLDCVVTKALRSQRWGALIEP
LSLLEGQFSRGKSFVYLREATMLTGFSNVRENLDLLGIAGYWIDLCGNVI
QEHQESALLFRALVWALKVLGDGAPRGATNFWFELHLLNSLGAGPSLQ
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mRNA from alignment at P-wetherbeei_contig52140:2..445-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52140.1.1 ID=mRNA_P-wetherbeei_contig52140.1.1|Name=mRNA_P-wetherbeei_contig52140.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig52140:2..445- (Phaeothamnion wetherbeei SAG_119_79)
CGGCTCTTTTCCAGCAAAGCTCTGGTTCTCAAGCGCCGGCCCATGGGCGA GTCGGATGCCCATATCGTTTTGCTTTGTCCTGGAGGACGGCTGGACTGTG TGGTGACCAAAGCCCTCCGTTCCCAACGCTGGGGGGCTCTGATCGAGCCA CTATCTCTCCTTGAGGGGCAATTCTCTCGCGGTAAGAGCTTCGTGTATCT CAGGGAAGCCACGATGCTCACGGGTTTTTCGAACGTGCGGGAGAACCTGG ACCTCCTGGGTATTGCCGGCTACTGGATCGATTTGTGTGGCAATGTCATT CAAGAGCATCAGGAGTCCGCTCTTTTGTTTCGCGCTCTGGTATGGGCTCT CAAGGTGCTCGGTGATGGGGCTCCGCGAGGCGCGACCAATTTCTGGTTCG AACTCCATCTGCTTAACAGTCTCGGGGCTGGTCCCTCGCTGCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52140:2..445-

>mRNA_P-wetherbeei_contig52140.1.1 ID=mRNA_P-wetherbeei_contig52140.1.1|Name=mRNA_P-wetherbeei_contig52140.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig52140:2..445- (Phaeothamnion wetherbeei SAG_119_79)
CGGCTCTTTTCCAGCAAAGCTCTGGTTCTCAAGCGCCGGCCCATGGGCGA
GTCGGATGCCCATATCGTTTTGCTTTGTCCTGGAGGACGGCTGGACTGTG
TGGTGACCAAAGCCCTCCGTTCCCAACGCTGGGGGGCTCTGATCGAGCCA
CTATCTCTCCTTGAGGGGCAATTCTCTCGCGGTAAGAGCTTCGTGTATCT
CAGGGAAGCCACGATGCTCACGGGTTTTTCGAACGTGCGGGAGAACCTGG
ACCTCCTGGGTATTGCCGGCTACTGGATCGATTTGTGTGGCAATGTCATT
CAAGAGCATCAGGAGTCCGCTCTTTTGTTTCGCGCTCTGGTATGGGCTCT
CAAGGTGCTCGGTGATGGGGCTCCGCGAGGCGCGACCAATTTCTGGTTCG
AACTCCATCTGCTTAACAGTCTCGGGGCTGGTCCCTCGCTGCAA
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