mRNA_P-wetherbeei_contig52106.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52106.1.1
Unique NamemRNA_P-wetherbeei_contig52106.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52106.1.1 vs. uniprot
Match: A0A0S8DHS3_9PROT (C4-dicarboxylate ABC transporter n=1 Tax=Betaproteobacteria bacterium SG8_40 TaxID=1703389 RepID=A0A0S8DHS3_9PROT)

HSP 1 Score: 300 bits (768), Expect = 3.450e-98
Identity = 156/178 (87.64%), Postives = 173/178 (97.19%), Query Frame = 1 
Query:    1 WLTHHLSLILFFVLAASLFCGFPVAFVLGGIAIVFGALGIVLGVFEPIQFFNLLPRIWGSAASNPILVAVPMFIFMGTMLERSGVANDLLHCLQVLLRRVPGGLAISVTLMGTIMAATTGIVGASVVMLTMIALPSMLERGYNK*LAVGTIASAGTLGILIPPSIMLVIMGDLLSVSV 534
            W+THH++L+LF VLA +LFCGFPVAFVLGG+AI+FG +GI+LGVFEP+QFFNLLPR+WG+AASNPILVAVPMFIFMGTMLERSGVANDLLHCLQVL RR+PGGLA+SVTLMGTIMAATTGIVGASVVMLTMIALPSML+RGY+K LAVGTIASAGTLGILIPPSIMLVIMGDLLS+SV
Sbjct:    3 WITHHIALVLFAVLAIALFCGFPVAFVLGGVAIMFGGIGILLGVFEPVQFFNLLPRVWGAAASNPILVAVPMFIFMGTMLERSGVANDLLHCLQVLTRRIPGGLAMSVTLMGTIMAATTGIVGASVVMLTMIALPSMLQRGYDKKLAVGTIASAGTLGILIPPSIMLVIMGDLLSISV 180
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BLAST of mRNA_P-wetherbeei_contig52106.1.1 vs. uniprot
Match: UPI0019AEFD40 (TRAP transporter large permease subunit n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019AEFD40)

HSP 1 Score: 293 bits (751), Expect = 1.270e-95
Identity = 157/178 (88.20%), Postives = 172/178 (96.63%), Query Frame = 1 
Query:    1 WLTHHLSLILFFVLAASLFCGFPVAFVLGGIAIVFGALGIVLGVFEPIQFFNLLPRIWGSAASNPILVAVPMFIFMGTMLERSGVANDLLHCLQVLLRRVPGGLAISVTLMGTIMAATTGIVGASVVMLTMIALPSMLERGYNK*LAVGTIASAGTLGILIPPSIMLVIMGDLLSVSV 534
            W+ HHLSLILF VLA +LFCG+PVAFVLGGIAI+FGA+G++L VF P+QFFNLLPRI+GSAASNPILVAVPMFIFMGT+LERSGVANDLLHCLQVLLRRVPGGLA+SVTLMGTIMAATTGIVGASVVMLT+IALP+M+ERGY+K LAVGTIASAGTLGILIPPSIMLVIMGDLLSVSV
Sbjct:    3 WIAHHLSLILFLVLAVALFCGYPVAFVLGGIAILFGAIGVLLDVFMPVQFFNLLPRIFGSAASNPILVAVPMFIFMGTVLERSGVANDLLHCLQVLLRRVPGGLAMSVTLMGTIMAATTGIVGASVVMLTLIALPAMMERGYSKELAVGTIASAGTLGILIPPSIMLVIMGDLLSVSV 180
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BLAST of mRNA_P-wetherbeei_contig52106.1.1 vs. uniprot
Match: A0A2E1TJ10_9PROT (C4-dicarboxylate ABC transporter n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2E1TJ10_9PROT)

HSP 1 Score: 291 bits (744), Expect = 1.450e-94
Identity = 158/178 (88.76%), Postives = 169/178 (94.94%), Query Frame = 1 
Query:    1 WLTHHLSLILFFVLAASLFCGFPVAFVLGGIAIVFGALGIVLGVFEPIQFFNLLPRIWGSAASNPILVAVPMFIFMGTMLERSGVANDLLHCLQVLLRRVPGGLAISVTLMGTIMAATTGIVGASVVMLTMIALPSMLERGYNK*LAVGTIASAGTLGILIPPSIMLVIMGDLLSVSV 534
            WLT +LSLILF VLA SLFCGFPVAFVLGGI I+FG LGI+L VFEPIQFFNLLPRIWG+AASNPILVAVPMFIFMGTMLE+SGVA+DLLHCLQVLLRR+PGGLA+SVT+MGTIMAATTGIVGASVVMLTMIALPSMLER Y+  LAVGTIASAGTLGILIPPSIMLVIMGDLLS+SV
Sbjct:    4 WLTEYLSLILFLVLALSLFCGFPVAFVLGGIGILFGGLGILLEVFEPIQFFNLLPRIWGTAASNPILVAVPMFIFMGTMLEKSGVADDLLHCLQVLLRRIPGGLAMSVTIMGTIMAATTGIVGASVVMLTMIALPSMLERKYDTHLAVGTIASAGTLGILIPPSIMLVIMGDLLSISV 181
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BLAST of mRNA_P-wetherbeei_contig52106.1.1 vs. uniprot
Match: A0A3D0ETT5_9PROT (C4-dicarboxylate ABC transporter n=5 Tax=Betaproteobacteria TaxID=28216 RepID=A0A3D0ETT5_9PROT)

HSP 1 Score: 285 bits (729), Expect = 2.650e-92
Identity = 150/178 (84.27%), Postives = 167/178 (93.82%), Query Frame = 1 
Query:    1 WLTHHLSLILFFVLAASLFCGFPVAFVLGGIAIVFGALGIVLGVFEPIQFFNLLPRIWGSAASNPILVAVPMFIFMGTMLERSGVANDLLHCLQVLLRRVPGGLAISVTLMGTIMAATTGIVGASVVMLTMIALPSMLERGYNK*LAVGTIASAGTLGILIPPSIMLVIMGDLLSVSV 534
            W+THH+SL LF VLA SLFCGFPVAFVLGGIAI+FG +G+ L +F+PIQFFNL+PR+WGSAA+NPI+VAVPMFIFMGTMLERSGVA DLL  LQ++ RR+PGGLA+SVTLMGTIMAATTGIVGASVVMLTMIALPSM+ERGY+K LAVGTIASAGTLGILIPPSIMLVIMGDLLSVSV
Sbjct:    3 WITHHVSLFLFLVLAISLFCGFPVAFVLGGIAILFGGIGMALDIFQPIQFFNLMPRVWGSAAANPIIVAVPMFIFMGTMLERSGVAKDLLQTLQIVTRRIPGGLAMSVTLMGTIMAATTGIVGASVVMLTMIALPSMMERGYSKELAVGTIASAGTLGILIPPSIMLVIMGDLLSVSV 180
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BLAST of mRNA_P-wetherbeei_contig52106.1.1 vs. uniprot
Match: A0A5C8P1B5_9BURK (TRAP transporter large permease subunit n=1 Tax=Zeimonas arvi TaxID=2498847 RepID=A0A5C8P1B5_9BURK)

HSP 1 Score: 248 bits (634), Expect = 5.140e-78
Identity = 133/178 (74.72%), Postives = 154/178 (86.52%), Query Frame = 1 
Query:    1 WLTHHLSLILFFVLAASLFCGFPVAFVLGGIAIVFGALGIVLGVFEPIQFFNLLPRIWGSAASNPILVAVPMFIFMGTMLERSGVANDLLHCLQVLLRRVPGGLAISVTLMGTIMAATTGIVGASVVMLTMIALPSMLERGYNK*LAVGTIASAGTLGILIPPSIMLVIMGDLLSVSV 534
            WL  HL L++F VLA  +F GFPVAFVLGG+++VFGA+G    VF P+QF+NLL RIWG  A++ +LVA+PMFIFMGT+LERSGVA +LL CLQVL RR+PGGLA+SVTLMGTIMAATTGIVGASVVMLT+IALP+ML RGY   LAVGTIAS+GTLGILIPPSIMLVIMGDL+SV V
Sbjct:    3 WLIDHLGLVMFVVLALLMFTGFPVAFVLGGVSLVFGAIGWYFEVFNPLQFYNLLVRIWGGVAASQVLVAIPMFIFMGTVLERSGVATELLKCLQVLTRRIPGGLAMSVTLMGTIMAATTGIVGASVVMLTLIALPAMLSRGYQPELAVGTIASSGTLGILIPPSIMLVIMGDLMSVPV 180
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BLAST of mRNA_P-wetherbeei_contig52106.1.1 vs. uniprot
Match: A0A259MJ30_9PROT (C4-dicarboxylate ABC transporter n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A259MJ30_9PROT)

HSP 1 Score: 247 bits (631), Expect = 1.410e-77
Identity = 129/178 (72.47%), Postives = 156/178 (87.64%), Query Frame = 1 
Query:    1 WLTHHLSLILFFVLAASLFCGFPVAFVLGGIAIVFGALGIVLGVFEPIQFFNLLPRIWGSAASNPILVAVPMFIFMGTMLERSGVANDLLHCLQVLLRRVPGGLAISVTLMGTIMAATTGIVGASVVMLTMIALPSMLERGYNK*LAVGTIASAGTLGILIPPSIMLVIMGDLLSVSV 534
            W+  HLS+++F VL   +F G+PVAFVLGG+A+ FGALGI   VF P QF +L+PRIWG A  N +L+AVPMF+FMGT+LE+SGVA++LL  LQVL RR+PGGLAISVT+MGTIMAATTGIVGASV+MLT+IALP+MLERGY+K L+VGTIASAGTLGILIPPSIMLVIMGDL+++SV
Sbjct:    3 WIADHLSVLMFLVLTFIMFVGYPVAFVLGGVALAFGALGIAFDVFRPAQFGSLIPRIWGQAVQNQVLIAVPMFVFMGTILEKSGVADELLKALQVLTRRIPGGLAISVTVMGTIMAATTGIVGASVIMLTLIALPTMLERGYSKELSVGTIASAGTLGILIPPSIMLVIMGDLMTLSV 180
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BLAST of mRNA_P-wetherbeei_contig52106.1.1 vs. uniprot
Match: A0A6A7M6I1_9PROT (TRAP transporter large permease subunit n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6A7M6I1_9PROT)

HSP 1 Score: 245 bits (625), Expect = 1.120e-76
Identity = 127/178 (71.35%), Postives = 155/178 (87.08%), Query Frame = 1 
Query:    1 WLTHHLSLILFFVLAASLFCGFPVAFVLGGIAIVFGALGIVLGVFEPIQFFNLLPRIWGSAASNPILVAVPMFIFMGTMLERSGVANDLLHCLQVLLRRVPGGLAISVTLMGTIMAATTGIVGASVVMLTMIALPSMLERGYNK*LAVGTIASAGTLGILIPPSIMLVIMGDLLSVSV 534
            W+  HL++++F VL   +F G+PVAFVLGG+A+ FG LGI   VF P QF +L+PRIWG A  N +L+AVPMF+FMGT+LERSGVA++LL  LQVL RR+PGGLA+SVT+MGTIMAATTGIVGASV+MLT+IALP+MLERGY+K L+VGTIASAGTLGILIPPSIMLVIMGDL+++SV
Sbjct:    3 WIADHLAILMFLVLTFIMFVGYPVAFVLGGVALSFGVLGIFFDVFRPAQFGSLIPRIWGQAVQNQVLIAVPMFVFMGTILERSGVADELLKALQVLTRRIPGGLAMSVTIMGTIMAATTGIVGASVIMLTLIALPTMLERGYSKELSVGTIASAGTLGILIPPSIMLVIMGDLMTISV 180
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BLAST of mRNA_P-wetherbeei_contig52106.1.1 vs. uniprot
Match: A0A1F3AGQ0_9PROT (C4-dicarboxylate ABC transporter n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 TaxID=1797225 RepID=A0A1F3AGQ0_9PROT)

HSP 1 Score: 243 bits (621), Expect = 4.480e-76
Identity = 125/178 (70.22%), Postives = 155/178 (87.08%), Query Frame = 1 
Query:    1 WLTHHLSLILFFVLAASLFCGFPVAFVLGGIAIVFGALGIVLGVFEPIQFFNLLPRIWGSAASNPILVAVPMFIFMGTMLERSGVANDLLHCLQVLLRRVPGGLAISVTLMGTIMAATTGIVGASVVMLTMIALPSMLERGYNK*LAVGTIASAGTLGILIPPSIMLVIMGDLLSVSV 534
            W+  HLS+++F VL   +F G+PVAFVLGG+A+ FG LGI   VF P QF +L+PRIWG A  N +L+AVPMF+FMGT+LER+G+A++LL  LQ+L RR+PGGLA+SVT+MGTIMAATTGIVGASV+MLT+IALP+MLERGY+K L+VGTIASAGTLGILIPPSIMLVIMGDL+++SV
Sbjct:    3 WIADHLSILMFLVLTFIMFVGYPVAFVLGGVALGFGLLGIFFDVFRPAQFGSLIPRIWGQAVQNQVLIAVPMFVFMGTILERAGIADELLKALQILTRRIPGGLAMSVTIMGTIMAATTGIVGASVIMLTLIALPTMLERGYSKELSVGTIASAGTLGILIPPSIMLVIMGDLMTISV 180
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BLAST of mRNA_P-wetherbeei_contig52106.1.1 vs. uniprot
Match: A0A1D2TE56_9BURK (C4-dicarboxylate ABC transporter n=1 Tax=Lautropia sp. SCN 70-15 TaxID=1660105 RepID=A0A1D2TE56_9BURK)

HSP 1 Score: 243 bits (620), Expect = 6.670e-76
Identity = 130/178 (73.03%), Postives = 152/178 (85.39%), Query Frame = 1 
Query:    1 WLTHHLSLILFFVLAASLFCGFPVAFVLGGIAIVFGALGIVLGVFEPIQFFNLLPRIWGSAASNPILVAVPMFIFMGTMLERSGVANDLLHCLQVLLRRVPGGLAISVTLMGTIMAATTGIVGASVVMLTMIALPSMLERGYNK*LAVGTIASAGTLGILIPPSIMLVIMGDLLSVSV 534
            W+  HL L++F VLA  +F GFPVAFVLGG+++ FGA+G    VF  +QF+NLL RIWG  A++ +LVA+PMFIFMG +LERSGVA +LL CLQ+L RR+PGGLA+SVTLMGTIMAATTGIVGASVVMLTMIALP+MLERGY   LAVGTIAS+GTLGILIPPSIMLVIMGDL+SV V
Sbjct:    4 WMIDHLGLLMFVVLALLMFTGFPVAFVLGGVSLAFGAIGWYFDVFNLLQFYNLLVRIWGGVAASQVLVAIPMFIFMGVVLERSGVATELLKCLQILTRRIPGGLAMSVTLMGTIMAATTGIVGASVVMLTMIALPTMLERGYKPELAVGTIASSGTLGILIPPSIMLVIMGDLMSVPV 181
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BLAST of mRNA_P-wetherbeei_contig52106.1.1 vs. uniprot
Match: A0A1B1UH85_9BRAD (C4-dicarboxylate ABC transporter n=1 Tax=Bradyrhizobium icense TaxID=1274631 RepID=A0A1B1UH85_9BRAD)

HSP 1 Score: 243 bits (619), Expect = 8.940e-76
Identity = 126/178 (70.79%), Postives = 155/178 (87.08%), Query Frame = 1 
Query:    1 WLTHHLSLILFFVLAASLFCGFPVAFVLGGIAIVFGALGIVLGVFEPIQFFNLLPRIWGSAASNPILVAVPMFIFMGTMLERSGVANDLLHCLQVLLRRVPGGLAISVTLMGTIMAATTGIVGASVVMLTMIALPSMLERGYNK*LAVGTIASAGTLGILIPPSIMLVIMGDLLSVSV 534
            W+  HLS+++F VL   +F G+PVAFVLGG+A+ FG LGI+L VF P QF +L+PRIWG A  N +L+AVPMFIFMGT+LE+SGVA++LL  LQV+ RR+PGGLA+SVTL+GTIMAATTGIVGASV+MLT++ALP+ML  GY+K L+VGTIASAGTLGILIPPSIMLVIMGDLL++SV
Sbjct:    3 WIADHLSILMFLVLTVIMFVGYPVAFVLGGVALGFGVLGIMLDVFRPAQFGSLIPRIWGQAVQNQVLIAVPMFIFMGTVLEKSGVADELLKALQVITRRIPGGLAMSVTLLGTIMAATTGIVGASVIMLTLVALPTMLASGYSKELSVGTIASAGTLGILIPPSIMLVIMGDLLTISV 180
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52106.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S8DHS3_9PROT3.450e-9887.64C4-dicarboxylate ABC transporter n=1 Tax=Betaprote... [more]
UPI0019AEFD401.270e-9588.20TRAP transporter large permease subunit n=1 Tax=Pr... [more]
A0A2E1TJ10_9PROT1.450e-9488.76C4-dicarboxylate ABC transporter n=1 Tax=Proteobac... [more]
A0A3D0ETT5_9PROT2.650e-9284.27C4-dicarboxylate ABC transporter n=5 Tax=Betaprote... [more]
A0A5C8P1B5_9BURK5.140e-7874.72TRAP transporter large permease subunit n=1 Tax=Ze... [more]
A0A259MJ30_9PROT1.410e-7772.47C4-dicarboxylate ABC transporter n=2 Tax=Rhodospir... [more]
A0A6A7M6I1_9PROT1.120e-7671.35TRAP transporter large permease subunit n=1 Tax=Rh... [more]
A0A1F3AGQ0_9PROT4.480e-7670.22C4-dicarboxylate ABC transporter n=1 Tax=Alphaprot... [more]
A0A1D2TE56_9BURK6.670e-7673.03C4-dicarboxylate ABC transporter n=1 Tax=Lautropia... [more]
A0A1B1UH85_9BRAD8.940e-7670.79C4-dicarboxylate ABC transporter n=1 Tax=Bradyrhiz... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52106contigP-wetherbeei_contig52106:3..536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1207063.P24_13875
PFAMsDctM
Model size534
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.09e-31
EggNOG OGsCOG4664@1|root,COG4664@2|Bacteria,1R4MZ@1224|Proteobacteria,2TQNR@28211|Alphaproteobacteria,2JPIP@204441|Rhodospirillales
DescriptionCOG4664 TRAP-type mannitol chloroaromatic compound transport system, large permease component
Cds size222
COG categoryQ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186781.5603104-UTR-P-wetherbeei_contig52106:2..1011683186781.5603104-UTR-P-wetherbeei_contig52106:2..101Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52106 3..101 -
1683186781.5807047-UTR-P-wetherbeei_contig52106:323..5361683186781.5807047-UTR-P-wetherbeei_contig52106:323..536Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52106 324..536 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186781.5711405-CDS-P-wetherbeei_contig52106:101..3231683186781.5711405-CDS-P-wetherbeei_contig52106:101..323Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52106 102..323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52106.1.1prot_P-wetherbeei_contig52106.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52106 102..323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52106.1.1

>prot_P-wetherbeei_contig52106.1.1 ID=prot_P-wetherbeei_contig52106.1.1|Name=mRNA_P-wetherbeei_contig52106.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp
MFIFMGTMLERSGVANDLLHCLQVLLRRVPGGLAISVTLMGTIMAATTGI
VGASVVMLTMIALPSMLERGYNK*
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mRNA from alignment at P-wetherbeei_contig52106:3..536-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52106.1.1 ID=mRNA_P-wetherbeei_contig52106.1.1|Name=mRNA_P-wetherbeei_contig52106.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig52106:3..536- (Phaeothamnion wetherbeei SAG_119_79)
TGGCTCACCCATCATCTGTCCCTGATCCTGTTTTTCGTGCTGGCTGCATC
GCTGTTCTGTGGCTTTCCGGTGGCGTTCGTGCTCGGCGGTATTGCCATTG
TGTTCGGCGCGCTGGGCATCGTGCTCGGGGTGTTCGAGCCGATCCAGTTC
TTCAACCTGCTGCCGCGCATCTGGGGCTCGGCGGCATCCAACCCGATCCT
GGTCGCGGTGCCGATGTTCATCTTCATGGGAACCATGCTGGAGCGCAGCG
GTGTCGCCAATGATCTGCTGCATTGCCTGCAGGTGCTGCTGCGCCGCGTC
CCTGGTGGACTGGCGATTTCCGTCACCCTGATGGGTACGATCATGGCGGC
CACTACCGGCATTGTTGGCGCGTCGGTGGTCATGCTGACCATGATTGCGC
TGCCCTCGATGCTGGAGCGCGGCTATAACAAGTAACTCGCCGTTGGCACC
ATTGCATCGGCCGGCACGCTTGGCATCCTGATTCCGCCGTCGATCATGCT
CGTGATCATGGGCGATCTGCTGTCGGTTTCGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52106:3..536-

>mRNA_P-wetherbeei_contig52106.1.1 ID=mRNA_P-wetherbeei_contig52106.1.1|Name=mRNA_P-wetherbeei_contig52106.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig52106:3..536- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCATCTTCATGGGAACCATGCTGGAGCGCAGCGGTGTCGCCAATGA
TCTGCTGCATTGCCTGCAGGTGCTGCTGCGCCGCGTCCCTGGTGGACTGG
CGATTTCCGTCACCCTGATGGGTACGATCATGGCGGCCACTACCGGCATT
GTTGGCGCGTCGGTGGTCATGCTGACCATGATTGCGCTGCCCTCGATGCT
GGAGCGCGGCTATAACAAGTAA
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