mRNA_P-wetherbeei_contig52100.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52100.1.1
Unique NamemRNA_P-wetherbeei_contig52100.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52100.1.1 vs. uniprot
Match: A0A2T2QAE1_9BRAD (Hydratase n=4 Tax=Bradyrhizobium TaxID=374 RepID=A0A2T2QAE1_9BRAD)

HSP 1 Score: 246 bits (628), Expect = 1.500e-80
Identity = 117/148 (79.05%), Postives = 125/148 (84.46%), Query Frame = 1 
Query:    1 PHLRWQGDGYFDMNRGDAPLESGFVDWQWSRGATRDGAIILYEALRRDGSRVDLAMTFDPQGRMQTFPPPPLHPLKRTGWRVRREARSEETASVFKTLEDAPFYARSVLSARLLGEPVTLMHESLSLDRFRMPIVQAMLPFRMPRARR 444
            P L WQGDGYFDMN GDAPLE GF DWQWSRGA RDG  ILYEA RRDG++VDLAMTFDP GRMQ F PPP   L+RTGWRV R  RSE  A + KTLEDAPFYARSV+SA+LLGEPVTLMHESLSLDRF+MP+VQAMLPFRMPRA R
Sbjct:   87 PRLSWQGDGYFDMNHGDAPLEQGFADWQWSRGAMRDGTAILYEAQRRDGNKVDLAMTFDPSGRMQAFDPPPTVDLRRTGWRVARSVRSESAAKIVKTLEDAPFYARSVISAKLLGEPVTLMHESLSLDRFKMPVVQAMLPFRMPRALR 234
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BLAST of mRNA_P-wetherbeei_contig52100.1.1 vs. uniprot
Match: A0A2T2QEN1_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. MOS002 TaxID=2133947 RepID=A0A2T2QEN1_9BRAD)

HSP 1 Score: 244 bits (622), Expect = 1.620e-78
Identity = 117/148 (79.05%), Postives = 126/148 (85.14%), Query Frame = 1 
Query:    1 PHLRWQGDGYFDMNRGDAPLESGFVDWQWSRGATRDGAIILYEALRRDGSRVDLAMTFDPQGRMQTFPPPPLHPLKRTGWRVRREARSEETASVFKTLEDAPFYARSVLSARLLGEPVTLMHESLSLDRFRMPIVQAMLPFRMPRARR 444
            P L WQGDGYFDMN GDAPLE GF DWQWSRGA +DG  ILYEA RRDG+RVDLAMTFDP G+MQ F PPP+  L RTGWRV R  RS+  A + KTLEDAPFYARSV+SA+LLGEPVTLMHESLSLDRF+MPIVQAMLPFRMPRARR
Sbjct:  168 PRLSWQGDGYFDMNCGDAPLEQGFSDWQWSRGAMQDGTAILYEAERRDGTRVDLAMTFDPNGQMQAFDPPPMVDLSRTGWRVARSVRSDSAAKIVKTLEDAPFYARSVVSAKLLGEPVTLMHESLSLDRFKMPIVQAMLPFRMPRARR 315
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BLAST of mRNA_P-wetherbeei_contig52100.1.1 vs. uniprot
Match: A0A2U8Q3Z3_9BRAD (Carotenoid 1,2-hydratase n=4 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A2U8Q3Z3_9BRAD)

HSP 1 Score: 242 bits (618), Expect = 6.540e-78
Identity = 118/148 (79.73%), Postives = 124/148 (83.78%), Query Frame = 1 
Query:    1 PHLRWQGDGYFDMNRGDAPLESGFVDWQWSRGATRDGAIILYEALRRDGSRVDLAMTFDPQGRMQTFPPPPLHPLKRTGWRVRREARSEETASVFKTLEDAPFYARSVLSARLLGEPVTLMHESLSLDRFRMPIVQAMLPFRMPRARR 444
            P L WQGDGYFD N GDAPLE GF  WQWSRGA +D   ILYEA RRDGSRVDLAMTFDP GRM+ F PPP   L+RTGWRV R  RSE TA + KTLEDAPFYARSV+SARLLGEPVTLMHESLSLDRF+MPIVQAMLPFRMPRARR
Sbjct:  168 PRLSWQGDGYFDTNHGDAPLEQGFSHWQWSRGAMQDRTAILYEAQRRDGSRVDLAMTFDPDGRMRAFEPPPTVDLRRTGWRVARSVRSEHTAEIVKTLEDAPFYARSVVSARLLGEPVTLMHESLSLDRFKMPIVQAMLPFRMPRARR 315
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BLAST of mRNA_P-wetherbeei_contig52100.1.1 vs. uniprot
Match: UPI0020124FD5 (hydratase n=2 Tax=Bradyrhizobium manausense TaxID=989370 RepID=UPI0020124FD5)

HSP 1 Score: 241 bits (614), Expect = 1.110e-77
Identity = 117/148 (79.05%), Postives = 124/148 (83.78%), Query Frame = 1 
Query:    1 PHLRWQGDGYFDMNRGDAPLESGFVDWQWSRGATRDGAIILYEALRRDGSRVDLAMTFDPQGRMQTFPPPPLHPLKRTGWRVRREARSEETASVFKTLEDAPFYARSVLSARLLGEPVTLMHESLSLDRFRMPIVQAMLPFRMPRARR 444
            P L WQGDGYFDMN GDAPLE GF DWQW+RGA +DG  ILYEA RRDGSRVDLAMTFDP GRMQ F PPP   L+R+GWRV R  RS+  A + KTLEDAPFYARSV+SA LLGEPVTLMHESLSLDRF MPIVQAMLPFRMPRARR
Sbjct:  140 PRLSWQGDGYFDMNCGDAPLEHGFSDWQWARGAMQDGTAILYEAERRDGSRVDLAMTFDPNGRMQIFEPPPTVDLRRSGWRVARSVRSDSAAKIVKTLEDAPFYARSVVSATLLGEPVTLMHESLSLDRFNMPIVQAMLPFRMPRARR 287
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BLAST of mRNA_P-wetherbeei_contig52100.1.1 vs. uniprot
Match: A0A5P6PGE1_9BRAD (Uncharacterized protein n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A5P6PGE1_9BRAD)

HSP 1 Score: 240 bits (612), Expect = 5.300e-77
Identity = 114/148 (77.03%), Postives = 123/148 (83.11%), Query Frame = 1 
Query:    1 PHLRWQGDGYFDMNRGDAPLESGFVDWQWSRGATRDGAIILYEALRRDGSRVDLAMTFDPQGRMQTFPPPPLHPLKRTGWRVRREARSEETASVFKTLEDAPFYARSVLSARLLGEPVTLMHESLSLDRFRMPIVQAMLPFRMPRARR 444
            P L WQGDGYFDMN GDAPLE GF DWQWSRG  +DG  ILYEA RRDGSRVDLAMTFDP GRMQ F PPP   L+RTGWRVRR   S+  A + KTLEDAPFYARSV+SA+L GEPVTLMHESL+LDRF+MP+VQAMLPFRMPRA R
Sbjct:  168 PRLSWQGDGYFDMNHGDAPLEQGFADWQWSRGTMQDGTAILYEAKRRDGSRVDLAMTFDPNGRMQAFEPPPTVDLRRTGWRVRRSIHSDGAAKLVKTLEDAPFYARSVISAKLFGEPVTLMHESLALDRFKMPVVQAMLPFRMPRALR 315
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BLAST of mRNA_P-wetherbeei_contig52100.1.1 vs. uniprot
Match: UPI000B1DFFB8 (hydratase n=1 Tax=Bradyrhizobium sp. CCH5-F6 TaxID=1768753 RepID=UPI000B1DFFB8)

HSP 1 Score: 238 bits (607), Expect = 1.280e-76
Identity = 113/147 (76.87%), Postives = 126/147 (85.71%), Query Frame = 1 
Query:    1 PHLRWQGDGYFDMNRGDAPLESGFVDWQWSRGATRDGAIILYEALRRDGSRVDLAMTFDPQGRMQTFPPPPLHPLKRTGWRVRREARSEETASVFKTLEDAPFYARSVLSARLLGEPVTLMHESLSLDRFRMPIVQAMLPFRMPRAR 441
            P L W+GDGYFDMN GDAPLE GF +WQWSRGA +DG +ILYEALRRDGSRVDLAMTFDP GR+Q F PPP+  L+RTGWR+ R  RS  +A + K LEDAPFYARSV+SARLLGE V+LMHESLSLDRF+MPIVQAMLPFRMPRAR
Sbjct:  140 PRLSWEGDGYFDMNCGDAPLEQGFSNWQWSRGAMQDGTVILYEALRRDGSRVDLAMTFDPNGRLQLFEPPPMVELRRTGWRMSRSVRSANSAKIVKNLEDAPFYARSVVSARLLGEAVSLMHESLSLDRFKMPIVQAMLPFRMPRAR 286
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BLAST of mRNA_P-wetherbeei_contig52100.1.1 vs. uniprot
Match: UPI0018166D83 (Carotenoid 1,2-hydratase n=1 Tax=Rhodopseudomonas sp. TaxID=1078 RepID=UPI0018166D83)

HSP 1 Score: 219 bits (557), Expect = 1.190e-68
Identity = 108/147 (73.47%), Postives = 118/147 (80.27%), Query Frame = 1 
Query:    1 PHLRWQGDGYFDMNRGDAPLESGFVDWQWSRGATRDGAIILYEALRRDGSRVDLAMTFDPQGRMQTFPPPPLHPLKRTGWRVRREARSEETASVFKTLEDAPFYARSVLSARLLGEPVTLMHESLSLDRFRMPIVQAMLPFRMPRAR 441
            P LRWQG+GY D N GDAP+E+GF DW+WSRGA RDGA ILYEA RRDGSR DLA TFD QG MQ F  P L  L R+GWRV R ARSE  A V KTLEDAPFYARSV++  LLGE VTLMHESLSLDRF++P+VQAMLPFRMPR R
Sbjct:  171 PSLRWQGEGYLDSNAGDAPIETGFRDWEWSRGALRDGAAILYEAERRDGSRFDLAATFDAQGNMQPFERPALAKLARSGWRVDRNARSENGAHVVKTLEDAPFYARSVVATTLLGEKVTLMHESLSLDRFKLPVVQAMLPFRMPRRR 317
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BLAST of mRNA_P-wetherbeei_contig52100.1.1 vs. uniprot
Match: UPI001163B14F (carotenoid 1,2-hydratase n=1 Tax=unclassified Tardiphaga TaxID=2631404 RepID=UPI001163B14F)

HSP 1 Score: 218 bits (556), Expect = 1.410e-68
Identity = 105/148 (70.95%), Postives = 117/148 (79.05%), Query Frame = 1 
Query:    1 PHLRWQGDGYFDMNRGDAPLESGFVDWQWSRGATRDGAIILYEALRRDGSRVDLAMTFDPQGRMQTFPPPPLHPLKRTGWRVRREARSEETASVFKTLEDAPFYARSVLSARLLGEPVTLMHESLSLDRFRMPIVQAMLPFRMPRARR 444
            P LRWQGDGYFDMN GDAPLESGF DWQW+RGA +DG  ILYEA RRDGS  +LAM F   GRMQ F PP    LK+TGWRV R  RSE    + +TLEDAPFYARS ++ +L GEPV +MHESLSLDRFRMP+VQAMLPFRMPRAR+
Sbjct:  164 PQLRWQGDGYFDMNHGDAPLESGFSDWQWARGALQDGTTILYEARRRDGSHTNLAMHFSDDGRMQPFTPPDGMALKQTGWRVARSLRSESDPRLLRTLEDAPFYARSAVAGQLRGEPVVMMHESLSLDRFRMPLVQAMLPFRMPRARK 311
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BLAST of mRNA_P-wetherbeei_contig52100.1.1 vs. uniprot
Match: UPI0019953CF2 (Carotenoid 1,2-hydratase n=1 Tax=Tardiphaga sp. TaxID=1926292 RepID=UPI0019953CF2)

HSP 1 Score: 218 bits (554), Expect = 2.830e-68
Identity = 102/146 (69.86%), Postives = 119/146 (81.51%), Query Frame = 1 
Query:    1 PHLRWQGDGYFDMNRGDAPLESGFVDWQWSRGATRDGAIILYEALRRDGSRVDLAMTFDPQGRMQTFPPPPLHPLKRTGWRVRREARSEETASVFKTLEDAPFYARSVLSARLLGEPVTLMHESLSLDRFRMPIVQAMLPFRMPRA 438
            PH  WQGDGYFD N GDAP+E GFVDWQW+RG+ RDG  +LYEA  RDGS+++LAM FD  G  + F PP L PL+R+GW+V R  RSE  ASV +TLEDAPFYARSV++++L GEPVTLMHESLSLDRFR P+VQAMLPFRMPRA
Sbjct:  164 PHWGWQGDGYFDSNSGDAPIEDGFVDWQWARGSLRDGTAVLYEAQCRDGSQINLAMRFDDAGNRRAFDPPKLVPLRRSGWQVGRSVRSEAGASVLRTLEDAPFYARSVVASKLSGEPVTLMHESLSLDRFRSPVVQAMLPFRMPRA 309
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BLAST of mRNA_P-wetherbeei_contig52100.1.1 vs. uniprot
Match: A0A0D7EM45_RHOPL (Hydroxyneurosporene synthase n=1 Tax=Rhodopseudomonas palustris TaxID=1076 RepID=A0A0D7EM45_RHOPL)

HSP 1 Score: 217 bits (553), Expect = 4.790e-68
Identity = 105/147 (71.43%), Postives = 118/147 (80.27%), Query Frame = 1 
Query:    1 PHLRWQGDGYFDMNRGDAPLESGFVDWQWSRGATRDGAIILYEALRRDGSRVDLAMTFDPQGRMQTFPPPPLHPLKRTGWRVRREARSEETASVFKTLEDAPFYARSVLSARLLGEPVTLMHESLSLDRFRMPIVQAMLPFRMPRAR 441
            P LRWQG+GY D N GDAP+E+GF DW+WSRGA RDG  ILYEA RRDGSR DLA+TFD +G MQ F  P L PL R+GWRV R ARS+  A V KTLEDAPFY RSV++  LLGE VTLMHESLSLDRF++P+VQAMLPFRMPR R
Sbjct:  171 PSLRWQGEGYLDTNAGDAPIETGFRDWEWSRGALRDGTAILYEAERRDGSRFDLAVTFDAKGNMQPFERPQLVPLARSGWRVNRNARSDNGARVVKTLEDAPFYTRSVVATTLLGEKVTLMHESLSLDRFKLPVVQAMLPFRMPRRR 317
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52100.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2T2QAE1_9BRAD1.500e-8079.05Hydratase n=4 Tax=Bradyrhizobium TaxID=374 RepID=A... [more]
A0A2T2QEN1_9BRAD1.620e-7879.05Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
A0A2U8Q3Z3_9BRAD6.540e-7879.73Carotenoid 1,2-hydratase n=4 Tax=Bradyrhizobiaceae... [more]
UPI0020124FD51.110e-7779.05hydratase n=2 Tax=Bradyrhizobium manausense TaxID=... [more]
A0A5P6PGE1_9BRAD5.300e-7777.03Uncharacterized protein n=3 Tax=Bradyrhizobium Tax... [more]
UPI000B1DFFB81.280e-7676.87hydratase n=1 Tax=Bradyrhizobium sp. CCH5-F6 TaxID... [more]
UPI0018166D831.190e-6873.47Carotenoid 1,2-hydratase n=1 Tax=Rhodopseudomonas ... [more]
UPI001163B14F1.410e-6870.95carotenoid 1,2-hydratase n=1 Tax=unclassified Tard... [more]
UPI0019953CF22.830e-6869.86Carotenoid 1,2-hydratase n=1 Tax=Tardiphaga sp. Ta... [more]
A0A0D7EM45_RHOPL4.790e-6871.43Hydroxyneurosporene synthase n=1 Tax=Rhodopseudomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52100contigP-wetherbeei_contig52100:1..447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog335659.S23_19130
Preferred namecrtC
Model size447
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00966
KEGG koko:K09844
KEGG ReactionR07516,R07519,R07522,R07528,R07532,R07536,R07539,R07543,R09790
KEGG Pathwayko00906,ko01100,map00906,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016122,GO:0016123,GO:0016829,GO:0016835,GO:0016836,GO:0018904,GO:0042440,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046148,GO:0071704,GO:1901178,GO:1901180,GO:1901503,GO:1901576
Exons1
Evalue1.74e-81
EggNOG OGsCOG5621@1|root,COG5621@2|Bacteria,1QPJ4@1224|Proteobacteria,2TVNN@28211|Alphaproteobacteria,3JVX4@41294|Bradyrhizobiaceae
EC4.2.1.131
Descriptionhydroxyneurosporene synthase
Cds size447
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186781.5022793-CDS-P-wetherbeei_contig52100:0..4471683186781.5022793-CDS-P-wetherbeei_contig52100:0..447Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52100 1..447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52100.1.1prot_P-wetherbeei_contig52100.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52100 1..447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52100.1.1

>prot_P-wetherbeei_contig52100.1.1 ID=prot_P-wetherbeei_contig52100.1.1|Name=mRNA_P-wetherbeei_contig52100.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
PHLRWQGDGYFDMNRGDAPLESGFVDWQWSRGATRDGAIILYEALRRDGS
RVDLAMTFDPQGRMQTFPPPPLHPLKRTGWRVRREARSEETASVFKTLED
APFYARSVLSARLLGEPVTLMHESLSLDRFRMPIVQAMLPFRMPRARR*
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mRNA from alignment at P-wetherbeei_contig52100:1..447+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52100.1.1 ID=mRNA_P-wetherbeei_contig52100.1.1|Name=mRNA_P-wetherbeei_contig52100.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig52100:1..447+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCATCTGCGCTGGCAAGGCGACGGCTATTTCGACATGAATCGGGGTGA
CGCACCACTCGAAAGCGGATTTGTCGATTGGCAGTGGTCGCGCGGTGCAA
CCCGTGACGGCGCAATCATCCTCTACGAGGCACTGCGACGCGACGGCAGC
CGCGTCGATCTCGCGATGACCTTCGATCCGCAGGGCCGCATGCAGACATT
CCCACCGCCGCCGCTACATCCGCTCAAACGTACGGGTTGGCGGGTCAGGC
GCGAAGCCCGCAGCGAGGAGACGGCGAGCGTCTTCAAAACGCTGGAGGAC
GCGCCGTTCTATGCACGGAGCGTGCTATCTGCCCGATTATTGGGAGAACC
CGTAACTTTGATGCACGAAAGCCTGTCGCTGGATCGTTTCAGGATGCCGA
TCGTACAGGCGATGTTACCGTTCCGGATGCCAAGGGCGCGGCGATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52100:1..447+

>mRNA_P-wetherbeei_contig52100.1.1 ID=mRNA_P-wetherbeei_contig52100.1.1|Name=mRNA_P-wetherbeei_contig52100.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig52100:1..447+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCATCTGCGCTGGCAAGGCGACGGCTATTTCGACATGAATCGGGGTGA
CGCACCACTCGAAAGCGGATTTGTCGATTGGCAGTGGTCGCGCGGTGCAA
CCCGTGACGGCGCAATCATCCTCTACGAGGCACTGCGACGCGACGGCAGC
CGCGTCGATCTCGCGATGACCTTCGATCCGCAGGGCCGCATGCAGACATT
CCCACCGCCGCCGCTACATCCGCTCAAACGTACGGGTTGGCGGGTCAGGC
GCGAAGCCCGCAGCGAGGAGACGGCGAGCGTCTTCAAAACGCTGGAGGAC
GCGCCGTTCTATGCACGGAGCGTGCTATCTGCCCGATTATTGGGAGAACC
CGTAACTTTGATGCACGAAAGCCTGTCGCTGGATCGTTTCAGGATGCCGA
TCGTACAGGCGATGTTACCGTTCCGGATGCCAAGGGCGCGGCGATAG
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