mRNA_P-wetherbeei_contig5197.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5197.1.1
Unique NamemRNA_P-wetherbeei_contig5197.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5197.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5197contigP-wetherbeei_contig5197:594..2848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2046
Hectar predicted targeting categoryother localisation
Exons2
Cds size1212
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186779.6176815-UTR-P-wetherbeei_contig5197:593..7891683186779.6176815-UTR-P-wetherbeei_contig5197:593..789Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5197 594..789 +
1683186779.644332-UTR-P-wetherbeei_contig5197:2210..28481683186779.644332-UTR-P-wetherbeei_contig5197:2210..2848Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5197 2211..2848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186779.626393-CDS-P-wetherbeei_contig5197:789..13381683186779.626393-CDS-P-wetherbeei_contig5197:789..1338Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5197 790..1338 +
1683186779.634971-CDS-P-wetherbeei_contig5197:1547..22101683186779.634971-CDS-P-wetherbeei_contig5197:1547..2210Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5197 1548..2210 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5197.1.1prot_P-wetherbeei_contig5197.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5197 790..2210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5197.1.1

>prot_P-wetherbeei_contig5197.1.1 ID=prot_P-wetherbeei_contig5197.1.1|Name=mRNA_P-wetherbeei_contig5197.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=404bp
MTPADQARRVEGGAFPHRKVTPHSDSDKFPFDAPDHHSRKSTTPKPTTSE
PETMATYTDGNNKGARNCHRCVPGNSTRKNILQRGAPRSVKYQQADVEGG
CHHGAPPISTSPRRSASPSQRRRTRGQHRQGAARAKSDRRDGGDSGGVTR
WRRGEQCGSDAIARVLLALKEGNGCLIAATMIEDVMGLCLLPNASSRLTT
ADLLRRPFLADDAAAATAGAGGPTAAFTTHYATSATTASATGTFTVATAP
ARPRRAASEQEAVLAAPAADTAAKAAAAAALLSSPTPFWTEPWPPPPPRG
AGSARKKHFPLRSPPSPPRPSSTTQAPLQCGRRPSGSSSTPLQHRSLKVA
ATMASSNPFRRRSLGSMSAKHHALKVAAAMASSNPFSRDSRFDGAAAVLY
SVA*
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mRNA from alignment at P-wetherbeei_contig5197:594..2848+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5197.1.1 ID=mRNA_P-wetherbeei_contig5197.1.1|Name=mRNA_P-wetherbeei_contig5197.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2255bp|location=Sequence derived from alignment at P-wetherbeei_contig5197:594..2848+ (Phaeothamnion wetherbeei SAG_119_79)
ATTCGAAAGAAACGAAAAAAAGAATTTCGTATCTGATAAAAGAAGGTGTG
AGTCACTTGCTTCTTATAGGAAGCAGAAAGATACGCGCTGAGATTACACA
CCCAGCTGGGGCGTTCTCTTAGATCAGTGAACCTGTTATTTAAAGTTTAT
CGGAATTCTGGCGAGCGAATTGGAAGCACGCAGCCCCCGGACGACCATGA
CACCCGCAGACCAAGCTAGGCGCGTTGAAGGCGGGGCCTTTCCACATCGA
AAGGTTACCCCCCACTCGGACAGCGATAAATTCCCATTCGACGCGCCAGA
TCACCACTCAAGAAAGAGCACGACGCCGAAACCGACTACGTCCGAGCCGG
AAACAATGGCCACCTATACTGACGGCAACAACAAGGGGGCTCGAAATTGT
CATCGATGTGTCCCCGGCAACTCCACGAGGAAAAACATTTTACAACGAGG
CGCGCCCCGTTCCGTGAAGTATCAGCAAGCCGACGTCGAGGGTGGCTGCC
ATCATGGTGCGCCTCCGATATCGACCTCGCCGCGGCGCTCGGCATCGCCT
TCACAACGGCGACGCACAAGGGGTCAGCACCGTCAGGGCGCAGCGCGGGC
AAAAAGCGACAGGAGAGACGGCGGCGACAGCGGCGGCGTAACACGGTGGA
GGCGCGGCGAGCAGTGCGGGAGCGATGCCATCGCCCGCGTCCTGCTGGCG
CTCAAGGAAGGCAACGGATGCCTCATAGCCGCCACGATGATTGAGGTGCA
CTTTTCCCGCCGCGTGCGCCTCCTCCTCTTTTCTCTCATACCACCCGCTT
TGATTCTGCGTGTCGGAAAGAAATACGCTGCTTCTTTTTTCTGCTGTATA
ATACGCCTTTGGTTTCACCGACTGCTCACGTTACCATCGCTTCCCCTTCG
TTGCTTTGCCGCTCGCTCGTCGTCGCTCCACCGTCATTTTCGCCGGTCGT
CCAGGACGTGATGGGGCTGTGCTTACTCCCGAACGCGTCCAGCCGGCTGA
CCACTGCGGATCTGCTGCGCCGGCCGTTCCTGGCGGACGATGCTGCTGCC
GCGACAGCTGGCGCCGGCGGCCCCACTGCTGCTTTCACGACCCACTATGC
CACTTCCGCCACCACTGCCTCTGCCACCGGCACCTTCACGGTTGCCACCG
CGCCGGCGCGACCGCGGCGGGCCGCTTCGGAGCAGGAAGCAGTTCTTGCC
GCACCTGCTGCCGACACAGCGGCGAAGGCTGCGGCAGCGGCGGCCCTGCT
CTCCAGCCCAACGCCCTTTTGGACAGAGCCGTGGCCCCCGCCGCCGCCGC
GAGGAGCGGGATCAGCGCGGAAGAAGCATTTCCCTTTGCGCAGCCCGCCA
TCTCCGCCGCGGCCGTCGTCTACGACGCAGGCGCCTTTGCAGTGCGGGAG
GCGGCCCTCCGGTTCCAGCAGCACGCCCTTGCAACACCGCTCGTTGAAGG
TTGCCGCCACCATGGCATCTTCGAACCCCTTCCGTCGCCGCAGCCTGGGC
AGCATGTCCGCGAAACACCACGCGTTGAAGGTTGCCGCCGCCATGGCATC
TTCGAACCCTTTCAGTCGAGACAGCCGATTCGACGGCGCAGCGGCGGTGC
TCTATTCGGTCGCTTAAGCGGCCGCCGCTGCCGTCCATTTGGCTGCCCGC
GGCCCGATCTTTGGGCAGCGGCGGCGGTGCTAGCGGCTTTGATGACGGCT
GGAACGTTTGGGTGCAGCGCAAAGGGGCCCCCGCCCGCCAGCTTGTCCCA
CCGCCCGTTCGTTCGCGGCACGGTGGACGGCGGGGGTGGGGCTTGGGCGC
ATTGGCCAAAGTAAGAGGGAAACGAGAAAAGGAAGGGAAGGAAAGGAAAG
GAGAAGAGGGCCAGAGAAAAGATGCATCGGACCAAGCCGCCAGGAGGGCG
GGGCAGGAGGTTATCATTTTTTTTTGTTTTTAATCTTCGTTTTATATGAA
GTGGAAGGCGGCACGGCCAGCGGCCGGCGACCGTGGCTGGAACACTGGCG
GCGGTAGCGGCACCGGTGACGGCAGCAGCGGCAGCAGCGAAGGTGGCGGC
GACGGCCGTGGCGGCGGCGGCGGCAGCAGGGGCTTCAGCGAAGGATGCGC
TCATTCGTGTGCGTTTGATATAAACTCTCTACGCGGGCATGCAGCAGGTG
GTCGGCGGCGAGAAGCCGCCAAGCTAAACCGGAGATCAGTCCGACCAACT
CGGAGAAATGATTATCGCAACCCAGCCAAACTGTAAAGAAGGAAAAAGAG
GGACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5197:594..2848+

>mRNA_P-wetherbeei_contig5197.1.1 ID=mRNA_P-wetherbeei_contig5197.1.1|Name=mRNA_P-wetherbeei_contig5197.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1212bp|location=Sequence derived from alignment at P-wetherbeei_contig5197:594..2848+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACACCCGCAGACCAAGCTAGGCGCGTTGAAGGCGGGGCCTTTCCACA
TCGAAAGGTTACCCCCCACTCGGACAGCGATAAATTCCCATTCGACGCGC
CAGATCACCACTCAAGAAAGAGCACGACGCCGAAACCGACTACGTCCGAG
CCGGAAACAATGGCCACCTATACTGACGGCAACAACAAGGGGGCTCGAAA
TTGTCATCGATGTGTCCCCGGCAACTCCACGAGGAAAAACATTTTACAAC
GAGGCGCGCCCCGTTCCGTGAAGTATCAGCAAGCCGACGTCGAGGGTGGC
TGCCATCATGGTGCGCCTCCGATATCGACCTCGCCGCGGCGCTCGGCATC
GCCTTCACAACGGCGACGCACAAGGGGTCAGCACCGTCAGGGCGCAGCGC
GGGCAAAAAGCGACAGGAGAGACGGCGGCGACAGCGGCGGCGTAACACGG
TGGAGGCGCGGCGAGCAGTGCGGGAGCGATGCCATCGCCCGCGTCCTGCT
GGCGCTCAAGGAAGGCAACGGATGCCTCATAGCCGCCACGATGATTGAGG
ACGTGATGGGGCTGTGCTTACTCCCGAACGCGTCCAGCCGGCTGACCACT
GCGGATCTGCTGCGCCGGCCGTTCCTGGCGGACGATGCTGCTGCCGCGAC
AGCTGGCGCCGGCGGCCCCACTGCTGCTTTCACGACCCACTATGCCACTT
CCGCCACCACTGCCTCTGCCACCGGCACCTTCACGGTTGCCACCGCGCCG
GCGCGACCGCGGCGGGCCGCTTCGGAGCAGGAAGCAGTTCTTGCCGCACC
TGCTGCCGACACAGCGGCGAAGGCTGCGGCAGCGGCGGCCCTGCTCTCCA
GCCCAACGCCCTTTTGGACAGAGCCGTGGCCCCCGCCGCCGCCGCGAGGA
GCGGGATCAGCGCGGAAGAAGCATTTCCCTTTGCGCAGCCCGCCATCTCC
GCCGCGGCCGTCGTCTACGACGCAGGCGCCTTTGCAGTGCGGGAGGCGGC
CCTCCGGTTCCAGCAGCACGCCCTTGCAACACCGCTCGTTGAAGGTTGCC
GCCACCATGGCATCTTCGAACCCCTTCCGTCGCCGCAGCCTGGGCAGCAT
GTCCGCGAAACACCACGCGTTGAAGGTTGCCGCCGCCATGGCATCTTCGA
ACCCTTTCAGTCGAGACAGCCGATTCGACGGCGCAGCGGCGGTGCTCTAT
TCGGTCGCTTAA
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