mRNA_P-wetherbeei_contig51935.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig51935.1.1
Unique Name	mRNA_P-wetherbeei_contig51935.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig51935.1.1 vs. uniprot
Match: A0A7K2B050_9ACTN (VOC family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2B050_9ACTN)

HSP 1 Score: 191 bits (484), Expect = 3.510e-60
Identity = 90/118 (76.27%), Postives = 100/118 (84.75%), Query Frame = 1

Query:    1 MRAPASQNHHDIAFFSIGEQAGPSEAGRRTVGMYHLAWEVPTLEELDAMREKLGSVGALRGASNHGANKSLYAFDPDGLEFEVMWLVPSEHWGDAEHEAIVEPLDLPAERREFAKVGL 354
            MRAP S+NHHDIAFFSIGEQA  S+AG RTVG+YH+AWEVPTLE L   + +L + GAL GAS+HG NKSLYA DPDGLEFEVMWLVP EHWGDAEH+AIVEPL+LPAER  FA VGL
Sbjct:   43 MRAPESENHHDIAFFSIGEQAATSQAGGRTVGLYHIAWEVPTLEALAEAQRRLQAEGALVGASDHGCNKSLYARDPDGLEFEVMWLVPPEHWGDAEHQAIVEPLNLPAERERFAAVGL 160

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BLAST of mRNA_P-wetherbeei_contig51935.1.1 vs. uniprot
Match: UPI001950E846 (VOC family protein n=1 Tax=Sinosporangium siamense TaxID=1367973 RepID=UPI001950E846)

HSP 1 Score: 191 bits (484), Expect = 3.510e-60
Identity = 88/119 (73.95%), Postives = 102/119 (85.71%), Query Frame = 1

Query:    1 MRAPASQNHHDIAFFSIGEQAGPSEAGRRTVGMYHLAWEVPTLEELDAMREKLGSVGALRGASNHGANKSLYAFDPDGLEFEVMWLVPSEHWGDAEHEAIVEPLDLPAERREFAKVGLR 357
            +RAP S NHHD+A F+IG  AG S AGR+TVGMYH+AWEVPTLEEL A+R+KL + GAL GAS+HGANKSLYA DPDGLEFEVMWLVP+EHWGD EHEAI+ PLD+ AE+R FA +GLR
Sbjct:   43 LRAPDSGNHHDLALFTIGASAGDSTAGRQTVGMYHIAWEVPTLEELAAVRDKLTAEGALHGASDHGANKSLYAKDPDGLEFEVMWLVPAEHWGDEEHEAIIRPLDIAAEQRRFAALGLR 161

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BLAST of mRNA_P-wetherbeei_contig51935.1.1 vs. uniprot
Match: A0A401YPQ5_9ACTN (Glyoxalase n=2 Tax=Embleya TaxID=2699295 RepID=A0A401YPQ5_9ACTN)

HSP 1 Score: 190 bits (483), Expect = 4.980e-60
Identity = 86/117 (73.50%), Postives = 101/117 (86.32%), Query Frame = 1

Query:    1 MRAPASQNHHDIAFFSIGEQAGPSEAGRRTVGMYHLAWEVPTLEELDAMREKLGSVGALRGASNHGANKSLYAFDPDGLEFEVMWLVPSEHWGDAEHEAIVEPLDLPAERREFAKVG 351
            MRAPAS+NHHDIAFF++G +AG S+AGRRTVGMYH+AWEVPTL++LD  R++L + GAL GAS+HGANKSLYA DPDGLEFEVMWLVP E+WGD EHEAI+ PLDL AER  FA + 
Sbjct:   43 MRAPASKNHHDIAFFTVGAEAGESQAGRRTVGMYHIAWEVPTLDDLDEARQRLATAGALIGASDHGANKSLYAKDPDGLEFEVMWLVPPEYWGDEEHEAIIRPLDLDAERERFAHLA 159

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BLAST of mRNA_P-wetherbeei_contig51935.1.1 vs. uniprot
Match: A0A6G2JZS1_9ACTN (VOC family protein n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6G2JZS1_9ACTN)

HSP 1 Score: 189 bits (481), Expect = 1.000e-59
Identity = 89/118 (75.42%), Postives = 100/118 (84.75%), Query Frame = 1

Query:    1 MRAPASQNHHDIAFFSIGEQAGPSEAGRRTVGMYHLAWEVPTLEELDAMREKLGSVGALRGASNHGANKSLYAFDPDGLEFEVMWLVPSEHWGDAEHEAIVEPLDLPAERREFAKVGL 354
            MRAP SQNHHDIAFFS+G +AG SEAGRRTVG+YH+AWEVPTLE L+  + +L + GAL GAS+HG NKSLYA DPDGLEFEVMWLVP +HWGDAE  AIVEPL+LPAER  FA VGL
Sbjct:   43 MRAPESQNHHDIAFFSVGAEAGASEAGRRTVGLYHIAWEVPTLEALEEAQRRLQANGALVGASDHGCNKSLYARDPDGLEFEVMWLVPPQHWGDAESRAIVEPLNLPAERARFAAVGL 160

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BLAST of mRNA_P-wetherbeei_contig51935.1.1 vs. uniprot
Match: A0A6I2ZSM6_9ACTN (VOC family protein n=2 Tax=root TaxID=1 RepID=A0A6I2ZSM6_9ACTN)

HSP 1 Score: 187 bits (476), Expect = 5.790e-59
Identity = 85/119 (71.43%), Postives = 100/119 (84.03%), Query Frame = 1

Query:    1 MRAPASQNHHDIAFFSIGEQAGPSEAGRRTVGMYHLAWEVPTLEELDAMREKLGSVGALRGASNHGANKSLYAFDPDGLEFEVMWLVPSEHWGDAEHEAIVEPLDLPAERREFAKVGLR 357
            MRAP SQNHHDIAFF+IG+ A P+ AGR +VGMYH+AWEV TLEEL+ MR KL + GAL GAS+HG NKSLY+ DPDGLEFEVMWLVP EHWG+  H+AIV+PLDLP +RR FA+ GL+
Sbjct:   43 MRAPLSQNHHDIAFFAIGQGAAPTTAGRSSVGMYHIAWEVGTLEELEEMRVKLSAAGALVGASDHGVNKSLYSIDPDGLEFEVMWLVPPEHWGEMAHQAIVQPLDLPGDRRHFAQFGLK 161

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BLAST of mRNA_P-wetherbeei_contig51935.1.1 vs. uniprot
Match: A0A6I3EYG6_9ACTN (VOC family protein n=2 Tax=root TaxID=1 RepID=A0A6I3EYG6_9ACTN)

HSP 1 Score: 186 bits (471), Expect = 3.340e-58
Identity = 88/118 (74.58%), Postives = 99/118 (83.90%), Query Frame = 1

Query:    1 MRAPASQNHHDIAFFSIGEQAGPSEAGRRTVGMYHLAWEVPTLEELDAMREKLGSVGALRGASNHGANKSLYAFDPDGLEFEVMWLVPSEHWGDAEHEAIVEPLDLPAERREFAKVGL 354
            MRAPAS NHHD+A F+IGE A PSEAG+RTVGMYHLAWEVPTL EL AM E+L + GAL G S+HG NKSLYA DPDGLEFEVMWLVP+  WG AEH+AI+EPLD+ AE R FA+VGL
Sbjct:   43 MRAPASDNHHDLALFAIGEGAAPSEAGQRTVGMYHLAWEVPTLAELLAMSERLQTAGALVGMSDHGCNKSLYARDPDGLEFEVMWLVPAAFWGAAEHQAIIEPLDIEAEMRRFAEVGL 160

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BLAST of mRNA_P-wetherbeei_contig51935.1.1 vs. uniprot
Match: A0A6B1H2I8_9ACTN (VOC family protein n=4 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B1H2I8_9ACTN)

HSP 1 Score: 184 bits (468), Expect = 8.150e-58
Identity = 86/117 (73.50%), Postives = 100/117 (85.47%), Query Frame = 1

Query:    1 MRAPASQNHHDIAFFSIGEQAGPSEAGRRTVGMYHLAWEVPTLEELDAMREKLGSVGALRGASNHGANKSLYAFDPDGLEFEVMWLVPSEHWGDAEHEAIVEPLDLPAERREFAKVG 351
            MRAPAS+NHHDIAFFSIG+ A PS AGRR+VGMYH+AWEVPTLEEL  +R++L  VGAL G S+HGANKSLYA DPDGLEFEVMWLVP+EHWGD E++AI+ PLDL  E+R FA + 
Sbjct:   37 MRAPASENHHDIAFFSIGDGAEPSAAGRRSVGMYHIAWEVPTLEELADIRQRLVDVGALYGESDHGANKSLYAKDPDGLEFEVMWLVPAEHWGDEENQAIIRPLDLAHEQRRFAALA 153

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BLAST of mRNA_P-wetherbeei_contig51935.1.1 vs. uniprot
Match: A0A1C6LIV3_9ACTN (Predicted ring-cleavage extradiol dioxygenase n=3 Tax=Streptomyces TaxID=1883 RepID=A0A1C6LIV3_9ACTN)

HSP 1 Score: 180 bits (457), Expect = 4.660e-56
Identity = 83/117 (70.94%), Postives = 96/117 (82.05%), Query Frame = 1

Query:    1 MRAPASQNHHDIAFFSIGEQAGPSEAGRRTVGMYHLAWEVPTLEELDAMREKLGSVGALRGASNHGANKSLYAFDPDGLEFEVMWLVPSEHWGDAEHEAIVEPLDLPAERREFAKVG 351
            +RAPAS NHHDIAFF+IG++A  SEAG RTVGMYH+AWEVP+L  L   R+ L + GAL+GAS+HGANKSLYA DPDGLEFEVMWLVP+EHWGD  H+AIV PLD+ AE R FA V 
Sbjct:   43 LRAPASDNHHDIAFFTIGDKAKASEAGSRTVGMYHIAWEVPSLTALARARDTLAAAGALKGASDHGANKSLYATDPDGLEFEVMWLVPAEHWGDEAHQAIVRPLDIDAEMRRFASVA 159

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BLAST of mRNA_P-wetherbeei_contig51935.1.1 vs. uniprot
Match: UPI0004CDDAF4 (VOC family protein n=1 Tax=Streptosporangium roseum TaxID=2001 RepID=UPI0004CDDAF4)

HSP 1 Score: 179 bits (455), Expect = 1.000e-55
Identity = 81/114 (71.05%), Postives = 96/114 (84.21%), Query Frame = 1

Query:    1 MRAPASQNHHDIAFFSIGEQAGPSEAGRRTVGMYHLAWEVPTLEELDAMREKLGSVGALRGASNHGANKSLYAFDPDGLEFEVMWLVPSEHWGDAEHEAIVEPLDLPAERREFA 342
            +RAP S NHHD+A F+IG  AG S AGR+TVGMYH+AWEVPTLEEL  ++E+L   GAL GAS+HGANKSLYA DPDGLEFEVMWLVP++ WG+ EHEAI+ PLD+PAE+R FA
Sbjct:   43 LRAPDSDNHHDLALFTIGSSAGDSRAGRQTVGMYHIAWEVPTLEELAEVQERLAREGALHGASDHGANKSLYAKDPDGLEFEVMWLVPAQFWGEEEHEAIIRPLDIPAEQRHFA 156

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BLAST of mRNA_P-wetherbeei_contig51935.1.1 vs. uniprot
Match: A0A7K1YUS6_9ACTN (VOC family protein n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1YUS6_9ACTN)

HSP 1 Score: 179 bits (453), Expect = 1.420e-55
Identity = 83/117 (70.94%), Postives = 94/117 (80.34%), Query Frame = 1

Query:    1 MRAPASQNHHDIAFFSIGEQAGPSEAGRRTVGMYHLAWEVPTLEELDAMREKLGSVGALRGASNHGANKSLYAFDPDGLEFEVMWLVPSEHWGDAEHEAIVEPLDLPAERREFAKVG 351
            MRAP S NHHDI FFSIGE A PS+AGR TVG+YH+AWEV TL+EL  MRE+L   GAL G S+HG NKSLYA DPDGLEFEVMWLVP ++WGD EHEAI+ PLDL A+R  FA +G
Sbjct:   37 MRAPESANHHDIVFFSIGEDAAPSQAGRSTVGLYHIAWEVGTLDELAEMRERLIEAGALVGQSDHGPNKSLYAKDPDGLEFEVMWLVPPQYWGDEEHEAIIRPLDLDADRERFAALG 153

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig51935.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig51935.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7K2B050_9ACTN	3.510e-60	76.27	VOC family protein n=1 Tax=Acidimicrobiia bacteriu...	[more]
UPI001950E846	3.510e-60	73.95	VOC family protein n=1 Tax=Sinosporangium siamense...	[more]
A0A401YPQ5_9ACTN	4.980e-60	73.50	Glyoxalase n=2 Tax=Embleya TaxID=2699295 RepID=A0A...	[more]
A0A6G2JZS1_9ACTN	1.000e-59	75.42	VOC family protein n=2 Tax=Acidimicrobiia bacteriu...	[more]
A0A6I2ZSM6_9ACTN	5.790e-59	71.43	VOC family protein n=2 Tax=root TaxID=1 RepID=A0A6...	[more]
A0A6I3EYG6_9ACTN	3.340e-58	74.58	VOC family protein n=2 Tax=root TaxID=1 RepID=A0A6...	[more]
A0A6B1H2I8_9ACTN	8.150e-58	73.50	VOC family protein n=4 Tax=Acidimicrobiia bacteriu...	[more]
A0A1C6LIV3_9ACTN	4.660e-56	70.94	Predicted ring-cleavage extradiol dioxygenase n=3 ...	[more]
UPI0004CDDAF4	1.000e-55	71.05	VOC family protein n=1 Tax=Streptosporangium roseu...	[more]
A0A7K1YUS6_9ACTN	1.420e-55	70.94	VOC family protein n=7 Tax=Acidimicrobiaceae bacte...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig51935	contig	P-wetherbeei_contig51935:189..548 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	1123320.KB889681_gene2597
PFAMs	Glyoxalase
Model size	360
Max annot lvl	201174\|Actinobacteria
Hectar predicted targeting category	other localisation
Exons	1
Evalue	9.41e-59
EggNOG OGs	COG0346@1\|root,COG0346@2\|Bacteria,2IK75@201174\|Actinobacteria
Description	glyoxalase bleomycin resistance protein dioxygenase
Cds size	360
COG category	E

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186779.1859944-CDS-P-wetherbeei_contig51935:188..548	1683186779.1859944-CDS-P-wetherbeei_contig51935:188..548	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig51935 189..548 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig51935.1.1	prot_P-wetherbeei_contig51935.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig51935 189..548 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig51935:189..548-
coding sequence from alignment at P-wetherbeei_contig51935:189..548-

protein sequence of mRNA_P-wetherbeei_contig51935.1.1

>prot_P-wetherbeei_contig51935.1.1 ID=prot_P-wetherbeei_contig51935.1.1|Name=mRNA_P-wetherbeei_contig51935.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
MRAPASQNHHDIAFFSIGEQAGPSEAGRRTVGMYHLAWEVPTLEELDAMR
EKLGSVGALRGASNHGANKSLYAFDPDGLEFEVMWLVPSEHWGDAEHEAI
VEPLDLPAERREFAKVGLR*

mRNA from alignment at P-wetherbeei_contig51935:189..548-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig51935.1.1 ID=mRNA_P-wetherbeei_contig51935.1.1|Name=mRNA_P-wetherbeei_contig51935.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig51935:189..548- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGCCCCCGCCTCGCAGAACCACCACGACATCGCGTTCTTCTCGAT
CGGCGAGCAGGCCGGGCCCAGTGAGGCCGGCCGTCGCACCGTGGGGATGT
ACCACCTCGCATGGGAAGTGCCGACGCTCGAGGAGCTCGACGCGATGCGC
GAGAAGCTCGGTTCGGTCGGCGCCCTGCGCGGCGCCAGCAACCACGGCGC
CAACAAGAGCCTGTACGCGTTCGACCCGGACGGCCTCGAGTTCGAGGTGA
TGTGGCTGGTCCCGTCGGAGCACTGGGGCGACGCCGAGCACGAAGCCATC
GTCGAGCCGCTCGACCTCCCGGCCGAGCGTCGCGAGTTCGCGAAGGTCGG
CCTGCGATGA

Coding sequence (CDS) from alignment at P-wetherbeei_contig51935:189..548-

>mRNA_P-wetherbeei_contig51935.1.1 ID=mRNA_P-wetherbeei_contig51935.1.1|Name=mRNA_P-wetherbeei_contig51935.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig51935:189..548- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGCCCCCGCCTCGCAGAACCACCACGACATCGCGTTCTTCTCGAT
CGGCGAGCAGGCCGGGCCCAGTGAGGCCGGCCGTCGCACCGTGGGGATGT
ACCACCTCGCATGGGAAGTGCCGACGCTCGAGGAGCTCGACGCGATGCGC
GAGAAGCTCGGTTCGGTCGGCGCCCTGCGCGGCGCCAGCAACCACGGCGC
CAACAAGAGCCTGTACGCGTTCGACCCGGACGGCCTCGAGTTCGAGGTGA
TGTGGCTGGTCCCGTCGGAGCACTGGGGCGACGCCGAGCACGAAGCCATC
GTCGAGCCGCTCGACCTCCCGGCCGAGCGTCGCGAGTTCGCGAAGGTCGG
CCTGCGATGA