mRNA_P-wetherbeei_contig51873.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51873.1.1
Unique NamemRNA_P-wetherbeei_contig51873.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51873.1.1 vs. uniprot
Match: A0A127EWG1_9HYPH (DMT(Drug/metabolite transporter) superfamily permease n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EWG1_9HYPH)

HSP 1 Score: 298 bits (763), Expect = 2.740e-99
Identity = 147/183 (80.33%), Postives = 170/183 (92.90%), Query Frame = 1 
Query:    1 GQYAWALAVTLLPFATVFALEFTTPAWVALLAAFFLHESMTRSRLGSVVLGFMGVLVIVRPGFASFQPLALLVLFAAFTFAISLIATKSLTNRVSTFSVIFWMNLMQLPMALAWPAFLAATGGPSLFVFRMGSDMIVPALALGAVGLTSHYCLTQAFRSGDATVVVPLDFLRIPLIAAVGWLF 549
            GQYAWALAVTLLPFATVF+LEFTTPAWVALLAA  L E MT+SRLGSV+LGF+GV+VIVRPG  SFQP+AL+VLFAAF FA+SLI TK LTNRVSTF++IFWMN++QLP+ALAWP  ++ TGGPSLF+FR+G+D+IVPALA+GAVGL+SH+CLTQAFRSGDATVVVPLDFLRIPLIA +GWLF
Sbjct:   88 GQYAWALAVTLLPFATVFSLEFTTPAWVALLAALVLGERMTKSRLGSVILGFIGVVVIVRPGSTSFQPMALMVLFAAFCFAVSLIITKQLTNRVSTFTIIFWMNVIQLPLALAWPVVVSLTGGPSLFIFRLGADLIVPALAMGAVGLSSHFCLTQAFRSGDATVVVPLDFLRIPLIAVIGWLF 270
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BLAST of mRNA_P-wetherbeei_contig51873.1.1 vs. uniprot
Match: A0A7C4HRY0_9BACT (DMT family transporter n=1 Tax=Kiritimatiellae bacterium TaxID=2212473 RepID=A0A7C4HRY0_9BACT)

HSP 1 Score: 228 bits (581), Expect = 3.420e-72
Identity = 122/182 (67.03%), Postives = 135/182 (74.18%), Query Frame = 1 
Query:    1 GQYAWALAVTLLPFATVFALEFTTPAWVALLAAFFLHESMTRSRLGSVVLGFMGVLVIVRPGFASFQPLALLVLFAAFTFAISLIATKSLTNRVSTFSVIFWMNLMQLPMALAWPAFLAATGGPSLFVFRMGSDMIVPALALGAVGLTSHYCLTQAFRSGDATVVVPLDFLRIPLIAAVGWL 546
            GQY WAL VTLLP ATVFALEFT P WV LLA   L E MT SRLGSV LGF+GVLVIVRPG ASFQP A+ VL AA  FA+SLIATK LTN VS+F +IFWMNLMQLPM LA        G   LF  R+ +  +VPAL  G  GL SHYCL  AFR+GDA+VVVP+DF+RIPLIA VGW+
Sbjct:   71 GQYTWALGVTLLPLATVFALEFTMPMWVTLLAVPLLGERMTASRLGSVALGFLGVLVIVRPGLASFQPAAIWVLIAALAFALSLIATKKLTNDVSSFVIIFWMNLMQLPMGLA--------GSDLLFPLRLDAGTVVPALLFGVAGLASHYCLANAFRAGDASVVVPIDFMRIPLIAVVGWM 244
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BLAST of mRNA_P-wetherbeei_contig51873.1.1 vs. uniprot
Match: A0A6L5FCN5_9HYPH (EamA family transporter n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FCN5_9HYPH)

HSP 1 Score: 211 bits (536), Expect = 2.670e-65
Identity = 110/181 (60.77%), Postives = 137/181 (75.69%), Query Frame = 1 
Query:    1 GQYAWALAVTLLPFATVFALEFTTPAWVALLAAFFLHESMTRSRLGSVVLGFMGVLVIVRPGFASFQPLALLVLFAAFTFAISLIATKSLTNRVSTFSVIFWMNLMQLPMALAWPAFLAATGGPSLFVFRMGSDMIVPALALGAVGLTSHYCLTQAFRSGDATVVVPLDFLRIPLIAAVGW 543
            GQY WAL++TLLP ATVF LEFT PAW  LLA   L E MT SR+G+VVLG +GVL+I+RPG A+FQP ALLVL AAF +A+S+I TK LTN  ++F++IFWMN+MQLPM+LA        G    F  R+ S  ++P + +G  G++SHYCL+ AFR+GDA+VVVPLDFLRIPLIA VGW
Sbjct:   71 GQYMWALSLTLLPLATVFTLEFTMPAWTMLLATLVLGERMTPSRIGAVVLGLVGVLIILRPGVAAFQPAALLVLTAAFAYAVSMINTKQLTNTEASFAIIFWMNVMQLPMSLA--------GSALDFPLRLTSADLLPVIGIGVSGVSSHYCLSNAFRAGDASVVVPLDFLRIPLIAWVGW 243
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BLAST of mRNA_P-wetherbeei_contig51873.1.1 vs. uniprot
Match: A0A537U7F9_9PROT (DMT family transporter n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537U7F9_9PROT)

HSP 1 Score: 204 bits (518), Expect = 1.400e-62
Identity = 113/181 (62.43%), Postives = 129/181 (71.27%), Query Frame = 1 
Query:    1 GQYAWALAVTLLPFATVFALEFTTPAWVALLAAFFLHESMTRSRLGSVVLGFMGVLVIVRPGFASFQPLALLVLFAAFTFAISLIATKSLTNRVSTFSVIFWMNLMQLPMALAWPAFLAATGGPSLFVFRMGSDMIVPALALGAVGLTSHYCLTQAFRSGDATVVVPLDFLRIPLIAAVGW 543
             QY WA ++ LLP ATVFALEFT PAW  LLA   L E  T SR+G+VVLG MGVLVIVRPG A+FQP ALLVL AA  FA +LI TK LT   +TF++IFWMNL+QLP+AL         G   LFV ++    + PALA+G  GL SHYCL  AFR GDA+VVVPLDFLRIPLIA VGW
Sbjct:   71 SQYVWATSLLLLPLATVFALEFTAPAWALLLAMPVLGERTTASRIGAVVLGLMGVLVIVRPGLATFQPAALLVLLAALGFANTLILTKKLTRTDTTFAIIFWMNLIQLPLALI--------GSNPLFVTKLAFADLAPALAVGISGLASHYCLANAFRWGDASVVVPLDFLRIPLIAVVGW 243
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BLAST of mRNA_P-wetherbeei_contig51873.1.1 vs. uniprot
Match: A0A363TTI9_9BRAD (EamA/RhaT family transporter n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TTI9_9BRAD)

HSP 1 Score: 203 bits (516), Expect = 3.070e-62
Identity = 107/179 (59.78%), Postives = 132/179 (73.74%), Query Frame = 1 
Query:   13 WALAVTLLPFATVFALEFTTPAWVALLAAFFLHESMTRSRLGSVVLGFMGVLVIVRPGFASFQPLALLVLFAAFTFAISLIATKSLTNRVSTFSVIFWMNLMQLPMALAWPAFLAATGGPSLFVFRMGSDMIVPALALGAVGLTSHYCLTQAFRSGDATVVVPLDFLRIPLIAAVGWLF 549
            W  A+T+LP ATVFA+EFT PAW ALLA  FL E MT SR GSV+LGF+GVLVI+RPG AS  P ALLVL AA  +AI+ + TK LT  + T++++ WMN +QLP+ALA        G    F+ R+G   I+PALA+G  G+ SHYC+T+AFR GDATVVVP+DFLR+PLIA VGWLF
Sbjct:   89 WVSALTVLPLATVFAIEFTMPAWTALLALIFLGERMTVSRAGSVLLGFVGVLVILRPGLASVHPAALLVLGAALGYAITFVITKKLTATIGTYTILVWMNGIQLPLALA--------GSDPAFLTRLGPGTILPALAMGLTGIASHYCVTRAFRYGDATVVVPIDFLRVPLIALVGWLF 259
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BLAST of mRNA_P-wetherbeei_contig51873.1.1 vs. uniprot
Match: UPI001FEDB7E8 (DMT family transporter n=1 Tax=Pseudolabrys sp. FHR47 TaxID=2562284 RepID=UPI001FEDB7E8)

HSP 1 Score: 200 bits (509), Expect = 3.940e-61
Identity = 105/185 (56.76%), Postives = 136/185 (73.51%), Query Frame = 1 
Query:    1 GQYAWALAVTLLPFATVFALEFTTPAWVALLAAFFLHESMTRSRLGSVVLGFMGVLVIVRPGFASFQPLALLVLFAAFTFAISLIATKSLTNRVSTFSVIFWMNLMQLPMALAWPAFLAATGGPSLFVFRMGSDM--IVPALALGAVGLTSHYCLTQAFRSGDATVVVPLDFLRIPLIAAVGWLF 549
             Q+AWA  VT+LP A VFALEFTTPAW ALLAA+FL E +T SR+G V+LG +G+LVI+RPG   F P A +VL AA  FA+ +I TKSLT+  STFS+IFWM ++QLP++L           P++F+     D+  I+PA+ +G  GLTSH+CL+ AFR+GDAT+VVP+DF+RIPLIA VGW F
Sbjct:   84 AQFAWAYGVTMLPLALVFALEFTTPAWTALLAAWFLREKLTPSRIGVVILGLLGILVILRPGITGFNPAAGIVLLAAVGFAVMMIMTKSLTSTQSTFSIIFWMAVIQLPLSLIG-------SNPAVFLDAGLYDLRHILPAIGVGLAGLTSHFCLSNAFRAGDATLVVPMDFMRIPLIAVVGWAF 261
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BLAST of mRNA_P-wetherbeei_contig51873.1.1 vs. uniprot
Match: A0A371B356_9HYPH (DMT family transporter n=2 Tax=Pseudolabrys sp. GY_H TaxID=2292256 RepID=A0A371B356_9HYPH)

HSP 1 Score: 199 bits (505), Expect = 1.110e-60
Identity = 106/185 (57.30%), Postives = 134/185 (72.43%), Query Frame = 1 
Query:    1 GQYAWALAVTLLPFATVFALEFTTPAWVALLAAFFLHESMTRSRLGSVVLGFMGVLVIVRPGFASFQPLALLVLFAAFTFAISLIATKSLTNRVSTFSVIFWMNLMQLPMALAWPAFLAATGGPSLFVFRMGSDM--IVPALALGAVGLTSHYCLTQAFRSGDATVVVPLDFLRIPLIAAVGWLF 549
             Q+AWA  VT+LP A VFALEFTTPAW ALLA +FL E +T  R+G V+LG +G+LVI+RPG ASF P A  VL AA  FA+ +I TKSLT   STFS+IFWM L+QLP++L           P++F+     D+  I+PA+ +G  GLTSHYCL+ AFR+GDAT+VVP+DF+RIP+IA VGW F
Sbjct:   72 AQFAWAYGVTMLPLALVFALEFTTPAWTALLATWFLGERLTPGRIGVVILGLIGILVILRPGIASFNPAAGFVLLAAIGFALMMIMTKSLTGTQSTFSIIFWMALIQLPLSLIG-------SNPAVFLDAGLYDLRHILPAIGVGLSGLTSHYCLSNAFRAGDATLVVPMDFMRIPIIAVVGWAF 249
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BLAST of mRNA_P-wetherbeei_contig51873.1.1 vs. uniprot
Match: A0A537VJG6_9PROT (DMT family transporter n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537VJG6_9PROT)

HSP 1 Score: 199 bits (506), Expect = 2.170e-60
Identity = 105/181 (58.01%), Postives = 128/181 (70.72%), Query Frame = 1 
Query:    1 GQYAWALAVTLLPFATVFALEFTTPAWVALLAAFFLHESMTRSRLGSVVLGFMGVLVIVRPGFASFQPLALLVLFAAFTFAISLIATKSLTNRVSTFSVIFWMNLMQLPMALAWPAFLAATGGPSLFVFRMGSDMIVPALALGAVGLTSHYCLTQAFRSGDATVVVPLDFLRIPLIAAVGW 543
              Y WA ++ L+P AT FALEFTTPAW  LLAA  L E +T SR+G+VV G +GVLVI+RPG A+FQP ALL L AAF  AI+LIATK LT   STF+++FWM L+QLP+ALA        G   LFV ++    +   + +G  GL SHYCLT AFR+GDA VVVPLDF+RIPLIA +GW
Sbjct:  106 ASYLWATSLLLIPLATAFALEFTTPAWTLLLAAPVLGERLTASRIGAVVFGLLGVLVILRPGLATFQPGALLTLVAAFGLAIALIATKKLTRTDSTFAIVFWMMLIQLPLALA--------GSDPLFVTKLNQGQVPAVIGIGVTGLLSHYCLTNAFRAGDAGVVVPLDFMRIPLIAVIGW 278
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BLAST of mRNA_P-wetherbeei_contig51873.1.1 vs. uniprot
Match: A0A346A3R4_9HYPH (DMT family transporter n=2 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A3R4_9HYPH)

HSP 1 Score: 198 bits (503), Expect = 2.590e-60
Identity = 105/183 (57.38%), Postives = 128/183 (69.95%), Query Frame = 1 
Query:    1 GQYAWALAVTLLPFATVFALEFTTPAWVALLAAFFLHESMTRSRLGSVVLGFMGVLVIVRPGFASFQPLALLVLFAAFTFAISLIATKSLTNRVSTFSVIFWMNLMQLPMALAWPAFLAATGGPSLFVFRMGSDMIVPALALGAVGLTSHYCLTQAFRSGDATVVVPLDFLRIPLIAAVGWLF 549
             Q+ WALA+T+LP A VFALEFT PAW  LLA + LHE MT SR+G VVLG +GVLVI+RPG AS  P A LVL AAF +AI++IATK LT   +TF ++FWM  +Q P++L         G     +  M S  I+PAL +G  G  SHYCL+ AFR+GDAT+VVPLDF+RIPLIA VGW F
Sbjct:   72 SQFGWALALTMLPLAMVFALEFTMPAWTVLLAPWLLHEKMTPSRIGVVVLGLVGVLVILRPGVASINPAAFLVLGAAFGYAITMIATKKLTMTETTFGIVFWMAAIQFPLSLI--------GSDLQALLNMNSSHILPALGIGLGGAASHYCLSNAFRAGDATLVVPLDFMRIPLIAVVGWAF 246
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BLAST of mRNA_P-wetherbeei_contig51873.1.1 vs. uniprot
Match: A0A1Q7BER2_9PROT (Permease n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BER2_9PROT)

HSP 1 Score: 197 bits (501), Expect = 5.190e-60
Identity = 107/181 (59.12%), Postives = 127/181 (70.17%), Query Frame = 1 
Query:    1 GQYAWALAVTLLPFATVFALEFTTPAWVALLAAFFLHESMTRSRLGSVVLGFMGVLVIVRPGFASFQPLALLVLFAAFTFAISLIATKSLTNRVSTFSVIFWMNLMQLPMALAWPAFLAATGGPSLFVFRMGSDMIVPALALGAVGLTSHYCLTQAFRSGDATVVVPLDFLRIPLIAAVGW 543
             QY WA ++ LLP ATVFALEFT PAW  LLA   L E +T SR+G+VVLG +G+LVI+RPGF +FQP ALLVL AA  FA +LI TK LT   + F++IFWMNL+QLP+AL         G   LFV ++    +   L +G  GL SHYCL  AFR+GDATVVVPLDFLRIPLIA VGW
Sbjct:   71 SQYVWATSLLLLPLATVFALEFTAPAWPLLLAVPVLGERLTASRIGAVVLGLIGMLVILRPGFTTFQPAALLVLLAALGFANTLIMTKKLTRTDTNFAIIFWMNLIQLPLALI--------GSDPLFVTQLDLGQLPAVLGIGISGLASHYCLANAFRAGDATVVVPLDFLRIPLIAVVGW 243
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51873.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127EWG1_9HYPH2.740e-9980.33DMT(Drug/metabolite transporter) superfamily perme... [more]
A0A7C4HRY0_9BACT3.420e-7267.03DMT family transporter n=1 Tax=Kiritimatiellae bac... [more]
A0A6L5FCN5_9HYPH2.670e-6560.77EamA family transporter n=1 Tax=Hyphomicrobiales b... [more]
A0A537U7F9_9PROT1.400e-6262.43DMT family transporter n=3 Tax=Alphaproteobacteria... [more]
A0A363TTI9_9BRAD3.070e-6259.78EamA/RhaT family transporter n=1 Tax=Bradyrhizobia... [more]
UPI001FEDB7E83.940e-6156.76DMT family transporter n=1 Tax=Pseudolabrys sp. FH... [more]
A0A371B356_9HYPH1.110e-6057.30DMT family transporter n=2 Tax=Pseudolabrys sp. GY... [more]
A0A537VJG6_9PROT2.170e-6058.01DMT family transporter n=1 Tax=Alphaproteobacteria... [more]
A0A346A3R4_9HYPH2.590e-6057.38DMT family transporter n=2 Tax=Pseudolabrys taiwan... [more]
A0A1Q7BER2_9PROT5.190e-6059.12Permease n=1 Tax=Alphaproteobacteria bacterium 13_... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51873contigP-wetherbeei_contig51873:2..550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog460265.Mnod_6600
PFAMsEamA
Model size549
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue9.9e-58
EggNOG OGsCOG0697@1|root,COG0697@2|Bacteria,1MV7Y@1224|Proteobacteria,2TUVM@28211|Alphaproteobacteria,1JX63@119045|Methylobacteriaceae
DescriptionEamA-like transporter family
Cds size549
COG categoryEG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186778.3968534-CDS-P-wetherbeei_contig51873:1..5501683186778.3968534-CDS-P-wetherbeei_contig51873:1..550Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51873 2..550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51873.1.1prot_P-wetherbeei_contig51873.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51873 2..550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51873.1.1

>prot_P-wetherbeei_contig51873.1.1 ID=prot_P-wetherbeei_contig51873.1.1|Name=mRNA_P-wetherbeei_contig51873.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=183bp
GQYAWALAVTLLPFATVFALEFTTPAWVALLAAFFLHESMTRSRLGSVVL
GFMGVLVIVRPGFASFQPLALLVLFAAFTFAISLIATKSLTNRVSTFSVI
FWMNLMQLPMALAWPAFLAATGGPSLFVFRMGSDMIVPALALGAVGLTSH
YCLTQAFRSGDATVVVPLDFLRIPLIAAVGWLF
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mRNA from alignment at P-wetherbeei_contig51873:2..550-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51873.1.1 ID=mRNA_P-wetherbeei_contig51873.1.1|Name=mRNA_P-wetherbeei_contig51873.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig51873:2..550- (Phaeothamnion wetherbeei SAG_119_79)
GGACAATACGCCTGGGCCTTGGCGGTGACGCTGTTGCCGTTCGCAACGGT
GTTCGCGCTTGAGTTCACGACGCCCGCCTGGGTCGCGCTGCTGGCGGCCT
TTTTCCTGCACGAAAGCATGACCCGGAGCAGGCTCGGCAGCGTCGTGCTG
GGCTTCATGGGCGTGCTGGTCATCGTGCGGCCCGGCTTCGCGAGTTTTCA
GCCGCTCGCGCTGCTCGTGCTGTTTGCCGCCTTCACCTTCGCGATTTCGC
TGATCGCCACAAAGTCGCTGACCAACCGGGTCAGCACGTTTTCGGTGATC
TTCTGGATGAACCTGATGCAACTTCCGATGGCGCTGGCGTGGCCCGCGTT
CCTCGCTGCGACCGGCGGGCCGTCGCTGTTCGTGTTCCGCATGGGCAGCG
ACATGATCGTGCCGGCGCTGGCGCTCGGCGCGGTCGGCCTCACCTCGCAT
TACTGCCTGACGCAGGCCTTCCGTTCGGGCGACGCCACCGTGGTGGTGCC
GCTCGATTTCCTTCGGATTCCTTTGATTGCGGCGGTCGGATGGCTGTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51873:2..550-

>mRNA_P-wetherbeei_contig51873.1.1 ID=mRNA_P-wetherbeei_contig51873.1.1|Name=mRNA_P-wetherbeei_contig51873.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig51873:2..550- (Phaeothamnion wetherbeei SAG_119_79)
GGACAATACGCCTGGGCCTTGGCGGTGACGCTGTTGCCGTTCGCAACGGT
GTTCGCGCTTGAGTTCACGACGCCCGCCTGGGTCGCGCTGCTGGCGGCCT
TTTTCCTGCACGAAAGCATGACCCGGAGCAGGCTCGGCAGCGTCGTGCTG
GGCTTCATGGGCGTGCTGGTCATCGTGCGGCCCGGCTTCGCGAGTTTTCA
GCCGCTCGCGCTGCTCGTGCTGTTTGCCGCCTTCACCTTCGCGATTTCGC
TGATCGCCACAAAGTCGCTGACCAACCGGGTCAGCACGTTTTCGGTGATC
TTCTGGATGAACCTGATGCAACTTCCGATGGCGCTGGCGTGGCCCGCGTT
CCTCGCTGCGACCGGCGGGCCGTCGCTGTTCGTGTTCCGCATGGGCAGCG
ACATGATCGTGCCGGCGCTGGCGCTCGGCGCGGTCGGCCTCACCTCGCAT
TACTGCCTGACGCAGGCCTTCCGTTCGGGCGACGCCACCGTGGTGGTGCC
GCTCGATTTCCTTCGGATTCCTTTGATTGCGGCGGTCGGATGGCTGTTC
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