mRNA_P-wetherbeei_contig51789.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51789.1.1
Unique NamemRNA_P-wetherbeei_contig51789.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51789.1.1 vs. uniprot
Match: A0A8F4FW48_9ACTN (P-II family nitrogen regulator n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4FW48_9ACTN)

HSP 1 Score: 171 bits (433), Expect = 3.240e-53
Identity = 84/112 (75.00%), Postives = 94/112 (83.93%), Query Frame = 1 
Query:    1 MKLITAVIKPFKLDGVKSALKEAGVVGITVTEVRGFGRQSGHTEVYRGAEYNIEFVPKMKLEVLADDGDVDGIVAAIVSAARTDKIGDGKIWVSAVESIVRIRTGELDGDAI 336
            MKLIT +IKPFKLD VK+ALK+AGV GITVTEV+GFGRQ+GHTEVYRG EY I+FVPK+KLEVLADD D D I+  IV  ART KIGDGK+WV+    IVRIRTGELD DAI
Sbjct:    1 MKLITTIIKPFKLDDVKAALKDAGVQGITVTEVQGFGRQAGHTEVYRGTEYTIDFVPKVKLEVLADDADADRIIGVIVETARTGKIGDGKVWVTDAGHIVRIRTGELDSDAI 112
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BLAST of mRNA_P-wetherbeei_contig51789.1.1 vs. uniprot
Match: UPI001C62C050 (P-II family nitrogen regulator n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C62C050)

HSP 1 Score: 170 bits (431), Expect = 6.540e-53
Identity = 81/112 (72.32%), Postives = 93/112 (83.04%), Query Frame = 1 
Query:    1 MKLITAVIKPFKLDGVKSALKEAGVVGITVTEVRGFGRQSGHTEVYRGAEYNIEFVPKMKLEVLADDGDVDGIVAAIVSAARTDKIGDGKIWVSAVESIVRIRTGELDGDAI 336
            MKL+TA+IKPFK+D VK ALKEAGVVGITVTEV+GFGRQ GHTE YRG EY I+FVPKMKLE++ DDGD D IV  I  AA T KIGDGK+WV+ ++S+VRIRTGE   DAI
Sbjct:    1 MKLVTAIIKPFKVDDVKDALKEAGVVGITVTEVKGFGRQGGHTETYRGTEYQIDFVPKMKLEIVLDDGDADAIVDVITKAAGTGKIGDGKVWVTTIDSLVRIRTGEQGADAI 112
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BLAST of mRNA_P-wetherbeei_contig51789.1.1 vs. uniprot
Match: A0A6J4IRL6_9ACTN (Nitrogen regulatory protein P-II n=1 Tax=uncultured Acidimicrobiales bacterium TaxID=310071 RepID=A0A6J4IRL6_9ACTN)

HSP 1 Score: 170 bits (430), Expect = 9.290e-53
Identity = 79/112 (70.54%), Postives = 99/112 (88.39%), Query Frame = 1 
Query:    1 MKLITAVIKPFKLDGVKSALKEAGVVGITVTEVRGFGRQSGHTEVYRGAEYNIEFVPKMKLEVLADDGDVDGIVAAIVSAARTDKIGDGKIWVSAVESIVRIRTGELDGDAI 336
            MKL+TA++KPFKLD VK ALK+AG+ G+TV+EV+GFGRQ GHTEVYRGAEY ++FVPKM++E+LADDGDVD I+  +V+AARTDKIGDGKIWV+ V+  +RIRTGE+  DAI
Sbjct:    1 MKLVTAIVKPFKLDEVKEALKDAGINGMTVSEVQGFGRQRGHTEVYRGAEYTVDFVPKMRIEMLADDGDVDRIIDTVVAAARTDKIGDGKIWVTDVDRTMRIRTGEMGPDAI 112
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BLAST of mRNA_P-wetherbeei_contig51789.1.1 vs. uniprot
Match: A0A0G3V2S5_9ACTN (Nitrogen regulatory protein P-II family n=5 Tax=root TaxID=1 RepID=A0A0G3V2S5_9ACTN)

HSP 1 Score: 168 bits (426), Expect = 3.780e-52
Identity = 78/112 (69.64%), Postives = 96/112 (85.71%), Query Frame = 1 
Query:    1 MKLITAVIKPFKLDGVKSALKEAGVVGITVTEVRGFGRQSGHTEVYRGAEYNIEFVPKMKLEVLADDGDVDGIVAAIVSAARTDKIGDGKIWVSAVESIVRIRTGELDGDAI 336
            MKLITA+IKPFKLD VK ALK AG+ GITV+EV+GFGRQ GHTEVYRGAEY I+FVPK+++E+L DD +VDG+V AI+ +ART KIGDGK+WV+ V+S+ R+RTGE   DAI
Sbjct:    1 MKLITAIIKPFKLDDVKDALKSAGMQGITVSEVQGFGRQRGHTEVYRGAEYEIDFVPKVRIEILVDDAEVDGLVTAIIESARTGKIGDGKVWVTTVDSVYRVRTGEAGSDAI 112
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BLAST of mRNA_P-wetherbeei_contig51789.1.1 vs. uniprot
Match: A0A173LMZ5_9ACTN (Nitrogen regulatory protein P-II n=1 Tax=Dietzia timorensis TaxID=499555 RepID=A0A173LMZ5_9ACTN)

HSP 1 Score: 168 bits (426), Expect = 3.780e-52
Identity = 77/112 (68.75%), Postives = 95/112 (84.82%), Query Frame = 1 
Query:    1 MKLITAVIKPFKLDGVKSALKEAGVVGITVTEVRGFGRQSGHTEVYRGAEYNIEFVPKMKLEVLADDGDVDGIVAAIVSAARTDKIGDGKIWVSAVESIVRIRTGELDGDAI 336
            MKL+TA+IKPF LD VK AL++ GV GITV+EV+GFGRQ GHTEVYRGAEY ++FVPK+K E+   D DVDG+V AIV AART KIGDGK+WV+ +++IVR+RTGE DGDA+
Sbjct:    1 MKLVTAIIKPFTLDDVKEALEQQGVYGITVSEVQGFGRQKGHTEVYRGAEYTVDFVPKLKAEIAVSDDDVDGVVQAIVDAARTGKIGDGKVWVTPIDTIVRVRTGETDGDAV 112
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BLAST of mRNA_P-wetherbeei_contig51789.1.1 vs. uniprot
Match: A0A1G8SE41_9ACTN (Nitrogen regulatory protein P-II family n=2 Tax=Actinomycetia TaxID=1760 RepID=A0A1G8SE41_9ACTN)

HSP 1 Score: 167 bits (422), Expect = 1.640e-51
Identity = 80/112 (71.43%), Postives = 95/112 (84.82%), Query Frame = 1 
Query:    1 MKLITAVIKPFKLDGVKSALKEAGVVGITVTEVRGFGRQSGHTEVYRGAEYNIEFVPKMKLEVLADDGDVDGIVAAIVSAARTDKIGDGKIWVSAVESIVRIRTGELDGDAI 336
            MKL+TAVIKPFKLD VKSAL+  GV G+TV EV+GFGRQ GHTEVYRGAEY ++ VPK+ +EVL DDGD + +V AIV AART KIGDGK+WVS VE+I+R+RTGE DGDA+
Sbjct:    3 MKLVTAVIKPFKLDDVKSALEVLGVQGLTVKEVQGFGRQRGHTEVYRGAEYTVDLVPKVSVEVLVDDGDSEKVVEAIVQAARTGKIGDGKVWVSPVETIIRVRTGERDGDAL 114
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BLAST of mRNA_P-wetherbeei_contig51789.1.1 vs. uniprot
Match: A0A4R7I3A6_9ACTN (Nitrogen regulatory protein P-II family n=2 Tax=Acidimicrobiales TaxID=84993 RepID=A0A4R7I3A6_9ACTN)

HSP 1 Score: 166 bits (421), Expect = 2.190e-51
Identity = 81/112 (72.32%), Postives = 93/112 (83.04%), Query Frame = 1 
Query:    1 MKLITAVIKPFKLDGVKSALKEAGVVGITVTEVRGFGRQSGHTEVYRGAEYNIEFVPKMKLEVLADDGDVDGIVAAIVSAARTDKIGDGKIWVSAVESIVRIRTGELDGDAI 336
            MKLITAVIKPFKLD VK ALK+AG+ GITVTEVRGFGRQ GHTE YRGAEY I+FVPK+++EV+ DD D D +V  IVS+A T KIGDGK+WV+ V  IVRIRTGE  GDA+
Sbjct:    1 MKLITAVIKPFKLDDVKDALKQAGIAGITVTEVRGFGRQGGHTETYRGAEYKIDFVPKVRVEVVVDDADADQVVETIVSSAATGKIGDGKVWVTDVGRIVRIRTGEEGGDAV 112
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BLAST of mRNA_P-wetherbeei_contig51789.1.1 vs. uniprot
Match: UPI001C632D87 (P-II family nitrogen regulator n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C632D87)

HSP 1 Score: 166 bits (420), Expect = 3.110e-51
Identity = 81/112 (72.32%), Postives = 96/112 (85.71%), Query Frame = 1 
Query:    1 MKLITAVIKPFKLDGVKSALKEAGVVGITVTEVRGFGRQSGHTEVYRGAEYNIEFVPKMKLEVLADDGDVDGIVAAIVSAARTDKIGDGKIWVSAVESIVRIRTGELDGDAI 336
            M+L+TA+IKPFKLD VK+ALKEAGVVGITVTEV+GFGRQ GHTE YRG EY I+FVPK+KLEV+ DD D+D +V  IV+AA T KIGDGK+WV+ VE++VRIRTGE   DAI
Sbjct:    1 MRLVTAIIKPFKLDDVKTALKEAGVVGITVTEVKGFGRQGGHTETYRGTEYQIDFVPKVKLEVVIDDIDMDRVVDVIVAAAGTGKIGDGKVWVTPVEAVVRIRTGEQGVDAI 112
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BLAST of mRNA_P-wetherbeei_contig51789.1.1 vs. uniprot
Match: A0A7Y1ZYZ2_9ACTN (P-II family nitrogen regulator n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZYZ2_9ACTN)

HSP 1 Score: 165 bits (418), Expect = 6.270e-51
Identity = 82/112 (73.21%), Postives = 95/112 (84.82%), Query Frame = 1 
Query:    1 MKLITAVIKPFKLDGVKSALKEAGVVGITVTEVRGFGRQSGHTEVYRGAEYNIEFVPKMKLEVLADDGDVDGIVAAIVSAARTDKIGDGKIWVSAVESIVRIRTGELDGDAI 336
            MKL+TAVIKPFKLD VK ALK AG  GITV+EVRGFGRQ GHTE YRGAEY I+FVPK++++++ADDG VD IV AIV++A T KIGDGKIWV+ V+ IVRIRTGE  GDAI
Sbjct:    1 MKLVTAVIKPFKLDDVKDALKAAGSAGITVSEVRGFGRQGGHTETYRGAEYKIDFVPKVEIQIVADDGAVDTIVEAIVASAATGKIGDGKIWVTDVDRIVRIRTGEEGGDAI 112
[Close]
BLAST of mRNA_P-wetherbeei_contig51789.1.1 vs. uniprot
Match: A0A3C2B726_9ACTN (P-II family nitrogen regulator n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B726_9ACTN)

HSP 1 Score: 165 bits (418), Expect = 6.270e-51
Identity = 81/112 (72.32%), Postives = 95/112 (84.82%), Query Frame = 1 
Query:    1 MKLITAVIKPFKLDGVKSALKEAGVVGITVTEVRGFGRQSGHTEVYRGAEYNIEFVPKMKLEVLADDGDVDGIVAAIVSAARTDKIGDGKIWVSAVESIVRIRTGELDGDAI 336
            MKLITA+IKPFKLD VK ALK AGVVG+TV+EV+GFGRQ GHTE YRGAEYN++FVPK+KLE++ DDG VD +V  I +AA + KIGDGKIWV+ V+SIVRIRTGE   DAI
Sbjct:    1 MKLITAIIKPFKLDEVKDALKAAGVVGMTVSEVKGFGRQGGHTETYRGAEYNVDFVPKVKLELVVDDGVVDTVVDTITTAASSGKIGDGKIWVTEVDSIVRIRTGESGSDAI 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51789.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F4FW48_9ACTN3.240e-5375.00P-II family nitrogen regulator n=1 Tax=Aquihabitan... [more]
UPI001C62C0506.540e-5372.32P-II family nitrogen regulator n=1 Tax=Iamia sp. S... [more]
A0A6J4IRL6_9ACTN9.290e-5370.54Nitrogen regulatory protein P-II n=1 Tax=unculture... [more]
A0A0G3V2S5_9ACTN3.780e-5269.64Nitrogen regulatory protein P-II family n=5 Tax=ro... [more]
A0A173LMZ5_9ACTN3.780e-5268.75Nitrogen regulatory protein P-II n=1 Tax=Dietzia t... [more]
A0A1G8SE41_9ACTN1.640e-5171.43Nitrogen regulatory protein P-II family n=2 Tax=Ac... [more]
A0A4R7I3A6_9ACTN2.190e-5172.32Nitrogen regulatory protein P-II family n=2 Tax=Ac... [more]
UPI001C632D873.110e-5172.32P-II family nitrogen regulator n=1 Tax=Iamia sp. S... [more]
A0A7Y1ZYZ2_9ACTN6.270e-5173.21P-II family nitrogen regulator n=1 Tax=Ilumatobact... [more]
A0A3C2B726_9ACTN6.270e-5172.32P-II family nitrogen regulator n=1 Tax=Acidimicrob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51789contigP-wetherbeei_contig51789:22..360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1278078.G419_21974
Preferred nameglnB
PFAMsP-II
Model size339
Max annot lvl201174|Actinobacteria
KEGG koko:K04751
KEGG Pathwayko02020,map02020
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0008144,GO:0008150,GO:0016020,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043531,GO:0044110,GO:0044116,GO:0044117,GO:0044119,GO:0044403,GO:0044419,GO:0044464,GO:0051704,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Exons1
Evalue2.42e-50
EggNOG OGsCOG0347@1|root,COG0347@2|Bacteria,2IKN1@201174|Actinobacteria,4G17M@85025|Nocardiaceae
Descriptionnitrogen regulatory protein P-II
Cds size339
COG categoryK
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186777.094082-CDS-P-wetherbeei_contig51789:21..3601683186777.094082-CDS-P-wetherbeei_contig51789:21..360Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51789 22..360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51789.1.1prot_P-wetherbeei_contig51789.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51789 22..360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51789.1.1

>prot_P-wetherbeei_contig51789.1.1 ID=prot_P-wetherbeei_contig51789.1.1|Name=mRNA_P-wetherbeei_contig51789.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
MKLITAVIKPFKLDGVKSALKEAGVVGITVTEVRGFGRQSGHTEVYRGAE
YNIEFVPKMKLEVLADDGDVDGIVAAIVSAARTDKIGDGKIWVSAVESIV
RIRTGELDGDAI*
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mRNA from alignment at P-wetherbeei_contig51789:22..360-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51789.1.1 ID=mRNA_P-wetherbeei_contig51789.1.1|Name=mRNA_P-wetherbeei_contig51789.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig51789:22..360- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCTGATCACCGCAGTGATCAAACCGTTCAAGCTCGACGGGGTGAA
GTCGGCGCTCAAGGAGGCCGGCGTCGTCGGCATCACCGTCACCGAAGTGC
GCGGCTTCGGCCGTCAGAGCGGCCACACCGAGGTGTACCGCGGTGCGGAG
TACAACATCGAGTTCGTCCCCAAGATGAAGCTCGAGGTGCTCGCCGACGA
CGGTGACGTCGACGGCATCGTTGCTGCGATCGTCTCTGCCGCTCGGACGG
ACAAGATCGGCGACGGGAAGATCTGGGTGAGTGCAGTCGAGTCGATCGTG
CGCATCCGCACCGGCGAGTTGGACGGCGACGCGATCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51789:22..360-

>mRNA_P-wetherbeei_contig51789.1.1 ID=mRNA_P-wetherbeei_contig51789.1.1|Name=mRNA_P-wetherbeei_contig51789.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig51789:22..360- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCTGATCACCGCAGTGATCAAACCGTTCAAGCTCGACGGGGTGAA
GTCGGCGCTCAAGGAGGCCGGCGTCGTCGGCATCACCGTCACCGAAGTGC
GCGGCTTCGGCCGTCAGAGCGGCCACACCGAGGTGTACCGCGGTGCGGAG
TACAACATCGAGTTCGTCCCCAAGATGAAGCTCGAGGTGCTCGCCGACGA
CGGTGACGTCGACGGCATCGTTGCTGCGATCGTCTCTGCCGCTCGGACGG
ACAAGATCGGCGACGGGAAGATCTGGGTGAGTGCAGTCGAGTCGATCGTG
CGCATCCGCACCGGCGAGTTGGACGGCGACGCGATCTGA
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