mRNA_P-wetherbeei_contig5177.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5177.3.2
Unique NamemRNA_P-wetherbeei_contig5177.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5177.3.2 vs. uniprot
Match: A0A7V7FMI1_9PROT (Uncharacterized protein n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A7V7FMI1_9PROT)

HSP 1 Score: 245 bits (626), Expect = 2.140e-78
Identity = 135/198 (68.18%), Postives = 147/198 (74.24%), Query Frame = 3
Query:  177 MRRCKRSSPFRYK*GPGKSAANRRASAAGSCIPGMRRR-----PSASARARRT-C---------YEFGVKVSLTTTNKRCRGGQFILHARALPGNPYDGHTLREVIGETEALTGREIERVYVDKGYRGHDAPYPNRVFRSGQRCGVHGQIKKELRRRCAIEPVIGHCKTDGHLGRNFLKGRLGDQINAVMSAVGYNLR 725
            M R  R    R+  GP KSA    A+AAGS +  +  R     P  +  A  T C         YEFGVKVSLTTTNKR +GGQFILH +ALPGNPYDGHTL+EVI ETE LTGREIER YVD+GYRGHDAP P+RVF+SGQ+ GVHGQIKKELRRR AIE VIGHCKTDGHL RNFLKGR GDQINAVMSAVGYNLR
Sbjct:    1 MTRAWRKPSPRHLAGPAKSADRSSANAAGSSLRRLASRHWRDGPPPTWHAPETECIGKGKAHKPYEFGVKVSLTTTNKRRKGGQFILHTKALPGNPYDGHTLKEVIEETETLTGREIERAYVDEGYRGHDAPNPHRVFKSGQKRGVHGQIKKELRRRSAIEAVIGHCKTDGHLDRNFLKGRDGDQINAVMSAVGYNLR 198          
BLAST of mRNA_P-wetherbeei_contig5177.3.2 vs. uniprot
Match: A0A7C7NXL3_9BACT (IS5 family transposase n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7C7NXL3_9BACT)

HSP 1 Score: 241 bits (616), Expect = 1.320e-74
Identity = 115/134 (85.82%), Postives = 122/134 (91.04%), Query Frame = 3
Query:  324 YEFGVKVSLTTTNKRCRGGQFILHARALPGNPYDGHTLREVIGETEALTGREIERVYVDKGYRGHDAPYPNRVFRSGQRCGVHGQIKKELRRRCAIEPVIGHCKTDGHLGRNFLKGRLGDQINAVMSAVGYNLR 725
            YEFGVKVSLTTTNKRC+GGQFILHA+ALPGNPYDGHTL EV+ ETEALTGREIERVYVDKGY GH AP P RVFRSGQ+ GV+GQIKKELRRR AIEPVIGHCK DGHL RN+LKGR GD+INAVMSAVGYN R
Sbjct:  236 YEFGVKVSLTTTNKRCKGGQFILHAKALPGNPYDGHTLAEVLEETEALTGREIERVYVDKGYVGHKAPRPMRVFRSGQKRGVYGQIKKELRRRSAIEPVIGHCKEDGHLDRNYLKGRHGDRINAVMSAVGYNFR 369          
BLAST of mRNA_P-wetherbeei_contig5177.3.2 vs. uniprot
Match: A0A0F9HTL8_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9HTL8_9ZZZZ)

HSP 1 Score: 230 bits (586), Expect = 6.150e-70
Identity = 108/125 (86.40%), Postives = 115/125 (92.00%), Query Frame = 3
Query:  324 YEFGVKVSLTTTNKRCRGGQFILHARALPGNPYDGHTLREVIGETEALTGREIERVYVDKGYRGHDAPYPNRVFRSGQRCGVHGQIKKELRRRCAIEPVIGHCKTDGHLGRNFLKGRLGDQINAV 698
            YEFGVKVSLTTTNKRC+GGQFILHA+ALPGNPYDGHTL++ I ETEALTGREIER YVDKGYRGHDAP P+RVF+SGQ+ GVHGQIKKELRRR AIE VIGHCKTDGHL RNFLKGR G QINAV
Sbjct:  284 YEFGVKVSLTTTNKRCKGGQFILHAKALPGNPYDGHTLKDAIEETEALTGREIERAYVDKGYRGHDAPKPHRVFKSGQKRGVHGQIKKELRRRSAIEAVIGHCKTDGHLDRNFLKGRDGAQINAV 408          
BLAST of mRNA_P-wetherbeei_contig5177.3.2 vs. uniprot
Match: A0A522R8V9_9HYPH (IS5 family transposase n=1 Tax=Rhizobiaceae bacterium TaxID=1913961 RepID=A0A522R8V9_9HYPH)

HSP 1 Score: 226 bits (576), Expect = 4.690e-68
Identity = 106/134 (79.10%), Postives = 118/134 (88.06%), Query Frame = 3
Query:  324 YEFGVKVSLTTTNKRCRGGQFILHARALPGNPYDGHTLREVIGETEALTGREIERVYVDKGYRGHDAPYPNRVFRSGQRCGVHGQIKKELRRRCAIEPVIGHCKTDGHLGRNFLKGRLGDQINAVMSAVGYNLR 725
            YEFG KVS+TTTN+RC+GGQF+LHA+ALPGNP+DGHTL  VI ET+ALTGREIERVYVDKGYRGH A  P RVF SGQ+ GVHG IK+ELRRR AIEPVIGH K+DGHLGRN+LKGR GD  NAV+SAVGYNLR
Sbjct:  284 YEFGTKVSITTTNRRCKGGQFVLHAKALPGNPFDGHTLAGVIEETQALTGREIERVYVDKGYRGHKARQPLRVFISGQKRGVHGAIKRELRRRSAIEPVIGHMKSDGHLGRNYLKGRHGDHANAVLSAVGYNLR 417          
BLAST of mRNA_P-wetherbeei_contig5177.3.2 vs. uniprot
Match: A0A357L4G2_9PROT (IS5/IS1182 family transposase (Fragment) n=3 Tax=Parvularcula sp. TaxID=1979207 RepID=A0A357L4G2_9PROT)

HSP 1 Score: 209 bits (533), Expect = 1.040e-64
Identity = 98/136 (72.06%), Postives = 112/136 (82.35%), Query Frame = 3
Query:  318 TCYEFGVKVSLTTTNKRCRGGQFILHARALPGNPYDGHTLREVIGETEALTGREIERVYVDKGYRGHDAPYPNRVFRSGQRCGVHGQIKKELRRRCAIEPVIGHCKTDGHLGRNFLKGRLGDQINAVMSAVGYNLR 725
            T +EFGVKVSL TTNKRC+GGQ +LHA+ALPG PYDGHTL++V+ ET ALTGREIER Y DKGYRGHDA  P RVF SGQ+ GVHGQIK ELRRR AIEPVIGH K+ G + RNFLKGR GD+ N +++A G NLR
Sbjct:   35 TPWEFGVKVSLVTTNKRCKGGQVVLHAKALPGAPYDGHTLKDVLAETSALTGREIERAYTDKGYRGHDADNPRRVFISGQKRGVHGQIKSELRRRSAIEPVIGHLKSGGSMDRNFLKGRPGDRANPILAATGPNLR 170          
BLAST of mRNA_P-wetherbeei_contig5177.3.2 vs. uniprot
Match: Q9AN33_BRAJP (ID593 n=8 Tax=Bradyrhizobium TaxID=374 RepID=Q9AN33_BRAJP)

HSP 1 Score: 202 bits (515), Expect = 2.790e-62
Identity = 101/149 (67.79%), Postives = 114/149 (76.51%), Query Frame = 3
Query:  279 MRRRPSASARARRTCYEFGVKVSLTTTNKRCRGGQFILHARALPGNPYDGHTLREVIGETEALTGREIERVYVDKGYRGHDAPYPNRVFRSGQRCGVHGQIKKELRRRCAIEPVIGHCKTDGHLGRNFLKGRLGDQINAVMSAVGYNLR 725
            M RR SASARAR   YEFGVK S+ T N+R  GG F+LHA +LP NPYDGHTLR VI  TE+LTG  IER YVDKGYRGHD   P RVF SGQ+ GV G IK+ELRRR AIEP+IGH K +GHLGR +LKGR GD  N ++SAVG+NLR
Sbjct:    1 MLRRSSASARARPPPYEFGVKASIVTNNQRAPGGLFVLHACSLPDNPYDGHTLRNVIERTESLTGCPIERAYVDKGYRGHDTQNPRRVFISGQKRGVFGVIKRELRRRSAIEPIIGHMKNEGHLGRCYLKGRAGDAANVLLSAVGHNLR 149          
BLAST of mRNA_P-wetherbeei_contig5177.3.2 vs. uniprot
Match: I2QQ00_9BRAD (Uncharacterized protein (Fragment) n=1 Tax=Bradyrhizobium sp. WSM1253 TaxID=319003 RepID=I2QQ00_9BRAD)

HSP 1 Score: 201 bits (512), Expect = 3.230e-61
Identity = 112/195 (57.44%), Postives = 127/195 (65.13%), Query Frame = 3
Query:  174 VMRRCKRSSPFRYK*GPGKSAANRRASAAGS----------CI-PGMRRRPSASARARRTCYEFGVKVSLTTTNKRCRGGQFILHARALPGNPYDGHTLREVIGETEALTGREIERVYVDKGYRGHDAPYPNRVFRSGQRCGVHGQIKKELRRRCAIEPVIGHCKTDGHLGRNFLKGRLGDQINAVMSAVGYNLR 725
              R  +R SP R   GP KSA +  A+AAGS          CI  G    P          YEFGVK S+ T N+R  GG F+LHAR+LP NPYDGHTLR+VI  TEALTG  IER YVDKGYRGHD   P RVF SGQ+ GV G IK+ELRRR AIEP+IGH K +GHLGR +LKGR GD  N V+SAVG+N R
Sbjct:   10 ASRHWRRHSPSRLA-GPCKSARSSSANAAGSFYSFHAPEVECIGKGKAAAP----------YEFGVKASIVTNNRRAPGGLFVLHARSLPDNPYDGHTLRDVIDRTEALTGCPIERAYVDKGYRGHDTQNPRRVFISGQKRGVFGAIKRELRRRSAIEPIIGHLKAEGHLGRCYLKGRAGDAANVVLSAVGHNFR 193          
BLAST of mRNA_P-wetherbeei_contig5177.3.2 vs. uniprot
Match: UPI001E2FEE2A (IS5 family transposase n=1 Tax=Reyranella aquatilis TaxID=2035356 RepID=UPI001E2FEE2A)

HSP 1 Score: 207 bits (526), Expect = 1.320e-60
Identity = 97/137 (70.80%), Postives = 109/137 (79.56%), Query Frame = 3
Query:  315 RTCYEFGVKVSLTTTNKRCRGGQFILHARALPGNPYDGHTLREVIGETEALTGREIERVYVDKGYRGHDAPYPNRVFRSGQRCGVHGQIKKELRRRCAIEPVIGHCKTDGHLGRNFLKGRLGDQINAVMSAVGYNLR 725
            R  YEFGVKVS+ TTN R  GGQF+LHA ALPGNPYDGHTLR VI +T+ LTGREIERVYVDKGYRGHDAP P  VF SGQ+ GV G IK+ELRRR A+EP+IGH K  GHLGR +LKG  GD  NA+++A GYN R
Sbjct:  281 RAPYEFGVKVSIVTTNARAPGGQFVLHAAALPGNPYDGHTLRAVIEDTQRLTGREIERVYVDKGYRGHDAPKPRSVFISGQKRGVFGAIKRELRRRSAVEPLIGHMKEQGHLGRCYLKGHAGDAANAILTAAGYNFR 417          
BLAST of mRNA_P-wetherbeei_contig5177.3.2 vs. uniprot
Match: A0A259JVL1_9HYPH (IS5/IS1182 family transposase (Fragment) n=1 Tax=Azorhizobium sp. 39-67-5 TaxID=1970322 RepID=A0A259JVL1_9HYPH)

HSP 1 Score: 205 bits (521), Expect = 1.770e-60
Identity = 96/137 (70.07%), Postives = 111/137 (81.02%), Query Frame = 3
Query:  315 RTCYEFGVKVSLTTTNKRCRGGQFILHARALPGNPYDGHTLREVIGETEALTGREIERVYVDKGYRGHDAPYPNRVFRSGQRCGVHGQIKKELRRRCAIEPVIGHCKTDGHLGRNFLKGRLGDQINAVMSAVGYNLR 725
            R  YEFGVKVS+ TTN    GGQF+LHA ALPGNPYDGHTLR+V+ +T+ LTGREIERVYVDKGYRGHDAP+P RVF SGQ+ GV G IK+ELRRR A+EP+IGH K +GHLGR +LKGR  D  NAV++A  YN R
Sbjct:  224 RAPYEFGVKVSIVTTNACSPGGQFVLHAVALPGNPYDGHTLRDVVEDTQRLTGREIERVYVDKGYRGHDAPHPRRVFISGQKRGVFGTIKRELRRRSAVEPLIGHLKEEGHLGRCYLKGRASDAANAVLTAAEYNFR 360          
BLAST of mRNA_P-wetherbeei_contig5177.3.2 vs. uniprot
Match: A0A7V8SWP2_9BACT (IS5 family transposase n=2 Tax=Bacteria TaxID=2 RepID=A0A7V8SWP2_9BACT)

HSP 1 Score: 206 bits (524), Expect = 2.620e-60
Identity = 98/134 (73.13%), Postives = 107/134 (79.85%), Query Frame = 3
Query:  324 YEFGVKVSLTTTNKRCRGGQFILHARALPGNPYDGHTLREVIGETEALTGREIERVYVDKGYRGHDAPYPNRVFRSGQRCGVHGQIKKELRRRCAIEPVIGHCKTDGHLGRNFLKGRLGDQINAVMSAVGYNLR 725
            YEFGVK S+ TTN R  GGQF+LHAR LPGNPYDGHTL  VI  TE LTGREIER YVDKGYRGHDAP P RVF SGQ+ GV G+IK+EL RR AIE VIGH K +GHLGR +LKGR GD  N ++SAVGYNLR
Sbjct:  284 YEFGVKASVVTTNARAPGGQFVLHARTLPGNPYDGHTLGAVIEATERLTGREIERAYVDKGYRGHDAPNPRRVFISGQKRGVFGRIKRELTRRSAIEAVIGHMKAEGHLGRCYLKGRAGDAANVILSAVGYNLR 417          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5177.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V7FMI1_9PROT2.140e-7868.18Uncharacterized protein n=2 Tax=Rhodospirillaceae ... [more]
A0A7C7NXL3_9BACT1.320e-7485.82IS5 family transposase n=1 Tax=Candidatus Marinimi... [more]
A0A0F9HTL8_9ZZZZ6.150e-7086.40Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A522R8V9_9HYPH4.690e-6879.10IS5 family transposase n=1 Tax=Rhizobiaceae bacter... [more]
A0A357L4G2_9PROT1.040e-6472.06IS5/IS1182 family transposase (Fragment) n=3 Tax=P... [more]
Q9AN33_BRAJP2.790e-6267.79ID593 n=8 Tax=Bradyrhizobium TaxID=374 RepID=Q9AN3... [more]
I2QQ00_9BRAD3.230e-6157.44Uncharacterized protein (Fragment) n=1 Tax=Bradyrh... [more]
UPI001E2FEE2A1.320e-6070.80IS5 family transposase n=1 Tax=Reyranella aquatili... [more]
A0A259JVL1_9HYPH1.770e-6070.07IS5/IS1182 family transposase (Fragment) n=1 Tax=A... [more]
A0A7V8SWP2_9BACT2.620e-6073.13IS5 family transposase n=2 Tax=Bacteria TaxID=2 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5177contigP-wetherbeei_contig5177:3124..3941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1304877.KI519401_gene44
PFAMsDUF772
Model size799
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07481
Hectar predicted targeting categoryother localisation
Exons2
Evalue4e-21
EggNOG OGsCOG3039@1|root,COG3039@2|Bacteria,1MVTU@1224|Proteobacteria,2TVIR@28211|Alphaproteobacteria,3JT6Q@41294|Bradyrhizobiaceae
Descriptionhmm pf01609
Cds size363
COG categoryL
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186776.8908324-UTR-P-wetherbeei_contig5177:3123..34981683186776.8908324-UTR-P-wetherbeei_contig5177:3123..3498Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5177 3124..3498 -
1683186776.9189577-UTR-P-wetherbeei_contig5177:3880..39411683186776.9189577-UTR-P-wetherbeei_contig5177:3880..3941Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5177 3881..3941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186776.901166-CDS-P-wetherbeei_contig5177:3498..37201683186776.901166-CDS-P-wetherbeei_contig5177:3498..3720Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5177 3499..3720 -
1683186776.9101114-CDS-P-wetherbeei_contig5177:3739..38801683186776.9101114-CDS-P-wetherbeei_contig5177:3739..3880Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5177 3740..3880 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5177.3.2prot_P-wetherbeei_contig5177.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5177 3499..3880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5177.3.2

>prot_P-wetherbeei_contig5177.3.2 ID=prot_P-wetherbeei_contig5177.3.2|Name=mRNA_P-wetherbeei_contig5177.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MPPETIWAKQFKRMNGRIKFLHTRLGRIIRDIGRKTGCDAALQEVFAVQV
QIRARQIRSQSPRQRGWKLYSWHAPETECIGKGKAYVLRVRRQGLAHHHQ
QTLPGRTVHPARQGASRQSI*
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mRNA from alignment at P-wetherbeei_contig5177:3124..3941-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5177.3.2 ID=mRNA_P-wetherbeei_contig5177.3.2|Name=mRNA_P-wetherbeei_contig5177.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=818bp|location=Sequence derived from alignment at P-wetherbeei_contig5177:3124..3941- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCTGCGTCAGTCCTATGCGCGGCTCGCCAGGACAGCGGCGATGAT GGCCGGGCGCTATGCCGCCAGAAACCATCTGGGCCAAGCAGTTCAAGCGC ATGAACGGCCGGATCAAGTTCCTGCACACCCGGCTGGGCCGGATCATCCG CGACATCGGGCGTAAGACCGGCTGTGATGCGGCGCTGCAAGAGGTCTTCG CCGTTGCCCTGTCCCCTGAAGGTTCAGGTACAAATAAGGGCCAGGCAAAT CCGCAGCCAATCGCCGCGCCAGCGCGGCTGGAAGCTGTATTCCTGGCATG CGCCGGAGACCGAGTGCATCGGCAAGGGCAAGGCGTACGTGCTACGAGTT CGGCGTCAAGGTCTCGCTCACCACCACCAACAAACGCTGCCGGGGCGGAC AGTTCATCCTGCACGCCAGGGCGCTTCCCGGCAATCCATATGACGGTCAC ACCCTGCGCGAGGTGATCGGGGAAACCGAGGCGCTGACCGGGCGCGAGAT CGAGCGGGTCTATGTGGACAAGGGCTATCGCGGTCACGACGCGCCGTACC CGAACCGGGTCTTCCGTTCCGGGCAGAGGTGCGGCGTACACGGACAAATC AAGAAGGAACTGCGGCGGCGCTGCGCCATTGAACCAGTCATCGGCCATTG CAAAACCGATGGTCATCTGGGCCGGAACTTCCTCAAGGGACGCCTCGGTG ACCAGATCAACGCCGTCATGAGCGCCGTTGGCTACAACCTCCGCTCATCC TCAAGTGGCTGAAGCTTCTTTTGCGCAAAATCATCACCGCCATCCGCACG GCAATGATGCCAGCATCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5177:3124..3941-

>mRNA_P-wetherbeei_contig5177.3.2 ID=mRNA_P-wetherbeei_contig5177.3.2|Name=mRNA_P-wetherbeei_contig5177.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig5177:3124..3941- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCAGAAACCATCTGGGCCAAGCAGTTCAAGCGCATGAACGGCCG
GATCAAGTTCCTGCACACCCGGCTGGGCCGGATCATCCGCGACATCGGGC
GTAAGACCGGCTGTGATGCGGCGCTGCAAGAGGTCTTCGCCGTTCAGGTA
CAAATAAGGGCCAGGCAAATCCGCAGCCAATCGCCGCGCCAGCGCGGCTG
GAAGCTGTATTCCTGGCATGCGCCGGAGACCGAGTGCATCGGCAAGGGCA
AGGCGTACGTGCTACGAGTTCGGCGTCAAGGTCTCGCTCACCACCACCAA
CAAACGCTGCCGGGGCGGACAGTTCATCCTGCACGCCAGGGCGCTTCCCG
GCAATCCATATGA
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