mRNA_P-wetherbeei_contig5177.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5177.2.1
Unique NamemRNA_P-wetherbeei_contig5177.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5177.2.1 vs. uniprot
Match: A0A2P8KTI3_9BURK (DUF1902 domain-containing protein n=1 Tax=Variovorax sp. WS11 TaxID=1105204 RepID=A0A2P8KTI3_9BURK)

HSP 1 Score: 122 bits (307), Expect = 3.860e-35
Identity = 60/75 (80.00%), Postives = 67/75 (89.33%), Query Frame = 1
Query:    1 VEHTIQLHIEKLPEGVYLATSDALQGLVAQGRTIQETIEIARDVAKKLIEAQTGTQGAVLTPVREVFDYPMIIAT 225
            +EH IQLHIEKLPEGVYLATSD +QGL+AQGRTIQETIEIARDVA+KLIEAQ+G     L PVREVFDYP+I+AT
Sbjct:    1 MEHMIQLHIEKLPEGVYLATSDEVQGLIAQGRTIQETIEIARDVARKLIEAQSGPINPPLRPVREVFDYPLIVAT 75          
BLAST of mRNA_P-wetherbeei_contig5177.2.1 vs. uniprot
Match: A0A1G3HEK3_9RHOO (DUF1902 domain-containing protein n=1 Tax=Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24 TaxID=1802018 RepID=A0A1G3HEK3_9RHOO)

HSP 1 Score: 117 bits (293), Expect = 5.270e-33
Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = 1
Query:    1 VEHTIQLHIEKLPEGVYLATSDALQGLVAQGRTIQETIEIARDVAKKLIEAQTGTQGAVLTPVREVFDYPMIIA 222
            +EH IQLHIEKLPEGVYLATSD +QGL+AQGRT+QET+EIARDVAKKLIE+Q     A L+P+RE FDYP+I+A
Sbjct:    1 MEHMIQLHIEKLPEGVYLATSDEVQGLIAQGRTLQETVEIARDVAKKLIESQADVTDATLSPLRESFDYPLIVA 74          
BLAST of mRNA_P-wetherbeei_contig5177.2.1 vs. uniprot
Match: A0A369XPX9_9PROT (DUF1902 domain-containing protein n=1 Tax=Candidatus Accumulibacter phosphatis TaxID=327160 RepID=A0A369XPX9_9PROT)

HSP 1 Score: 115 bits (288), Expect = 3.050e-32
Identity = 56/75 (74.67%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    1 VEHTIQLHIEKLPEGVYLATSDALQGLVAQGRTIQETIEIARDVAKKLIEAQTGTQGAVLTPVREVFDYPMIIAT 225
            +EH IQLHIE+LPEGVYLATSD +QGLVAQGRTIQETIEIA DVAKKLIEAQ+G     L+P  + FDYP+I+AT
Sbjct:    1 MEHMIQLHIERLPEGVYLATSDEIQGLVAQGRTIQETIEIAADVAKKLIEAQSGAAAKRLSPACDTFDYPLIVAT 75          
BLAST of mRNA_P-wetherbeei_contig5177.2.1 vs. uniprot
Match: A0A1F3X224_9PROT (DUF1902 domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F3X224_9PROT)

HSP 1 Score: 110 bits (274), Expect = 4.170e-30
Identity = 55/75 (73.33%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    1 VEHTIQLHIEKLPEGVYLATSDALQGLVAQGRTIQETIEIARDVAKKLIEAQTGTQGAVLTPVREVFDYPMIIAT 225
            +EH + LHIE LPEGVYLATSD +QGLVAQGRTI ETIEIARDVAKKLIEAQ G   + L  V E FDYP+I+AT
Sbjct:    1 MEHLLNLHIEHLPEGVYLATSDDVQGLVAQGRTIAETIEIARDVAKKLIEAQVGFNQSALPTVSESFDYPLIVAT 75          
BLAST of mRNA_P-wetherbeei_contig5177.2.1 vs. uniprot
Match: D8PER5_9BACT (Uncharacterized protein n=2 Tax=Nitrospira TaxID=1234 RepID=D8PER5_9BACT)

HSP 1 Score: 104 bits (260), Expect = 5.850e-28
Identity = 50/74 (67.57%), Postives = 63/74 (85.14%), Query Frame = 1
Query:    1 VEHTIQLHIEKLPEGVYLATSDALQGLVAQGRTIQETIEIARDVAKKLIEAQTGTQG-AVLTPVREVFDYPMII 219
            +E  + LHIEKLPEGVYLATSDA+QGLVAQGRTIQETI+IARDV KK++EA+   +G ++L P R+ FDYP+I+
Sbjct:    1 MERIVNLHIEKLPEGVYLATSDAIQGLVAQGRTIQETIDIARDVVKKILEAKQEREGDSLLPPARDEFDYPLIV 74          
BLAST of mRNA_P-wetherbeei_contig5177.2.1 vs. uniprot
Match: A0A1V5FT05_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium ADurb.BinA280 TaxID=1852793 RepID=A0A1V5FT05_9PROT)

HSP 1 Score: 103 bits (256), Expect = 2.320e-27
Identity = 50/74 (67.57%), Postives = 62/74 (83.78%), Query Frame = 1
Query:    1 VEHTIQLHIEKLPEGVYLATSDALQGLVAQGRTIQETIEIARDVAKKLIEAQTGTQGAV-LTPVREVFDYPMII 219
            +EH I LHIE LPEGVYLATSD + GL+AQGRT+ ET+EIARDVAKKLIEAQ+   G++ LT +RE FDYP+++
Sbjct:    1 MEHIINLHIEHLPEGVYLATSDDVPGLIAQGRTVTETLEIARDVAKKLIEAQSERAGSMRLTELRETFDYPLVL 74          
BLAST of mRNA_P-wetherbeei_contig5177.2.1 vs. uniprot
Match: A0A5E8AW01_9BACT (Uncharacterized protein n=2 Tax=Imperialibacter TaxID=1649461 RepID=A0A5E8AW01_9BACT)

HSP 1 Score: 103 bits (258), Expect = 2.400e-27
Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    1 VEHTIQLHIEKLPEGVYLATSDALQGLVAQGRTIQETIEIARDVAKKLIEAQTGTQGAVLTPVREVFDYPMII 219
            +E  I LHIEKLPEGVYLATSDA+QGLVAQGRTI ET+EIARDVAKKL+EAQ GT   VL      FD P++I
Sbjct:   27 MERKIDLHIEKLPEGVYLATSDAIQGLVAQGRTISETLEIARDVAKKLLEAQEGTNPIVLPEFDNEFDLPLVI 99          
BLAST of mRNA_P-wetherbeei_contig5177.2.1 vs. uniprot
Match: A0A4Q2WXX0_9GAMM (Type II toxin-antitoxin system HicB family antitoxin n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A4Q2WXX0_9GAMM)

HSP 1 Score: 101 bits (252), Expect = 9.710e-27
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 VEHTIQLHIEKLPEGVYLATSDALQGLVAQGRTIQETIEIARDVAKKLIEAQTG--TQGAVLTPVREVFDYPMII 219
            +EH + LHIEKLPEGVYLATSD + GLVAQGRTI ET+EIARDVA+KLIEA+ G   Q   L P  E FDYP+I+
Sbjct:    1 MEHVVNLHIEKLPEGVYLATSDEVPGLVAQGRTITETLEIARDVARKLIEARGGHDAQAPGLVPTAESFDYPLIL 75          
BLAST of mRNA_P-wetherbeei_contig5177.2.1 vs. uniprot
Match: A0A3N5JWM8_9PROT (DUF1902 domain-containing protein n=1 Tax=Zetaproteobacteria bacterium TaxID=2026807 RepID=A0A3N5JWM8_9PROT)

HSP 1 Score: 101 bits (251), Expect = 1.380e-26
Identity = 49/74 (66.22%), Postives = 61/74 (82.43%), Query Frame = 1
Query:    1 VEHTIQLHIEKLPEGVYLATSDALQGLVAQGRTIQETIEIARDVAKKLIEAQTGTQGAV-LTPVREVFDYPMII 219
            +E  + LHIEKLPEGVYLATS  +QGLVAQGRTIQET+EIARDVA+KLIEA++  +G   L P  EVF+YP+++
Sbjct:    1 MERIVNLHIEKLPEGVYLATSTEIQGLVAQGRTIQETLEIARDVARKLIEARSEREGVPPLAPTAEVFEYPLVV 74          
BLAST of mRNA_P-wetherbeei_contig5177.2.1 vs. uniprot
Match: A0A7Y8I6V1_9BACT (DUF1902 domain-containing protein n=1 Tax=Ignavibacteriaceae bacterium TaxID=2651163 RepID=A0A7Y8I6V1_9BACT)

HSP 1 Score: 101 bits (251), Expect = 1.380e-26
Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = 1
Query:    1 VEHTIQLHIEKLPEGVYLATSDALQGLVAQGRTIQETIEIARDVAKKLIEAQTGTQGAV-LTPVREVFDYPMIIAT 225
            +E  I++HIEKLPEG+YLATSD +QGLVAQGRT  E +EIARDV +KLIEAQT +   V L+P+ E FDYP+IIA+
Sbjct:    1 MERIIKVHIEKLPEGLYLATSDDIQGLVAQGRTATEALEIARDVCRKLIEAQTSSDNEVRLSPIAESFDYPLIIAS 76          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5177.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P8KTI3_9BURK3.860e-3580.00DUF1902 domain-containing protein n=1 Tax=Variovor... [more]
A0A1G3HEK3_9RHOO5.270e-3374.32DUF1902 domain-containing protein n=1 Tax=Rhodocyc... [more]
A0A369XPX9_9PROT3.050e-3274.67DUF1902 domain-containing protein n=1 Tax=Candidat... [more]
A0A1F3X224_9PROT4.170e-3073.33DUF1902 domain-containing protein n=2 Tax=unclassi... [more]
D8PER5_9BACT5.850e-2867.57Uncharacterized protein n=2 Tax=Nitrospira TaxID=1... [more]
A0A1V5FT05_9PROT2.320e-2767.57Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A5E8AW01_9BACT2.400e-2771.23Uncharacterized protein n=2 Tax=Imperialibacter Ta... [more]
A0A4Q2WXX0_9GAMM9.710e-2768.00Type II toxin-antitoxin system HicB family antitox... [more]
A0A3N5JWM8_9PROT1.380e-2666.22DUF1902 domain-containing protein n=1 Tax=Zetaprot... [more]
A0A7Y8I6V1_9BACT1.380e-2665.79DUF1902 domain-containing protein n=1 Tax=Ignaviba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5177contigP-wetherbeei_contig5177:2842..3069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog330214.NIDE2001
PFAMsDUF1902
Model size228
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.6e-29
EggNOG OGsCOG1598@1|root,COG1598@2|Bacteria
DescriptionPFAM Uncharacterised protein family UPF0150
Cds size228
COG categoryN
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186776.863985-CDS-P-wetherbeei_contig5177:2841..30691683186776.863985-CDS-P-wetherbeei_contig5177:2841..3069Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5177 2842..3069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5177.2.1prot_P-wetherbeei_contig5177.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5177 2842..3069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5177.2.1

>prot_P-wetherbeei_contig5177.2.1 ID=prot_P-wetherbeei_contig5177.2.1|Name=mRNA_P-wetherbeei_contig5177.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
VEHTIQLHIEKLPEGVYLATSDALQGLVAQGRTIQETIEIARDVAKKLIE
AQTGTQGAVLTPVREVFDYPMIIAT*
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mRNA from alignment at P-wetherbeei_contig5177:2842..3069+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5177.2.1 ID=mRNA_P-wetherbeei_contig5177.2.1|Name=mRNA_P-wetherbeei_contig5177.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig5177:2842..3069+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGAACACACAATCCAGTTGCATATAGAGAAGTTGCCGGAAGGGGTCTA TTTAGCCACCAGCGATGCGCTGCAAGGCCTGGTTGCGCAGGGCCGGACGA TCCAGGAAACCATCGAGATCGCGCGCGATGTGGCGAAAAAGCTGATTGAG GCGCAAACCGGAACGCAGGGCGCGGTGTTAACCCCTGTGCGTGAAGTCTT TGATTATCCCATGATCATTGCCACGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5177:2842..3069+

>mRNA_P-wetherbeei_contig5177.2.1 ID=mRNA_P-wetherbeei_contig5177.2.1|Name=mRNA_P-wetherbeei_contig5177.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig5177:2842..3069+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGAACACACAATCCAGTTGCATATAGAGAAGTTGCCGGAAGGGGTCTA
TTTAGCCACCAGCGATGCGCTGCAAGGCCTGGTTGCGCAGGGCCGGACGA
TCCAGGAAACCATCGAGATCGCGCGCGATGTGGCGAAAAAGCTGATTGAG
GCGCAAACCGGAACGCAGGGCGCGGTGTTAACCCCTGTGCGTGAAGTCTT
TGATTATCCCATGATCATTGCCACGTAA
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