mRNA_P-wetherbeei_contig5176.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5176.2.1
Unique NamemRNA_P-wetherbeei_contig5176.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5176.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5176contigP-wetherbeei_contig5176:1701..3043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1344
Hectar predicted targeting categoryother localisation
Exons1
Cds size696
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186776.698738-UTR-P-wetherbeei_contig5176:1700..23471683186776.698738-UTR-P-wetherbeei_contig5176:1700..2347Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5176 1701..2347 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186776.71146-CDS-P-wetherbeei_contig5176:2347..30431683186776.71146-CDS-P-wetherbeei_contig5176:2347..3043Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5176 2348..3043 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5176.2.1prot_P-wetherbeei_contig5176.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5176 2348..3043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5176.2.1

>prot_P-wetherbeei_contig5176.2.1 ID=prot_P-wetherbeei_contig5176.2.1|Name=mRNA_P-wetherbeei_contig5176.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=232bp
TRWTFCCRRRTGRCRTRGGWSGPSGCRCVVCVLRCFGQAFLSPLRICSGK
AASLLPAALLPLAGSSVGVETHSSLFAGVCPTHLTEFFLSSFTSAERGAT
CRVTALPSAPLTTYHTLWCTCSFPPLCLNRSSRPAYLGTTEQDLANLRAT
RKGFNSALRTALQRSGKPSGAQTRMAHGPDGTRGFPPGWRSVPSLYAGKN
RGGGGCGGAGEGGGGSSGGGDDAADGNGDKP*
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mRNA from alignment at P-wetherbeei_contig5176:1701..3043-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5176.2.1 ID=mRNA_P-wetherbeei_contig5176.2.1|Name=mRNA_P-wetherbeei_contig5176.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1343bp|location=Sequence derived from alignment at P-wetherbeei_contig5176:1701..3043- (Phaeothamnion wetherbeei SAG_119_79)
ACGAGGTGGACTTTTTGCTGCCGCCGCAGGACGGGGCGGTGCCGGACCCG
GGGCGGGTGGTCGGGCCCGTCAGGGTGCAGGTGTGTTGTGTGTGTGTTGA
GATGTTTCGGGCAGGCTTTTCTTTCTCCTCTGCGCATTTGCAGTGGAAAG
GCTGCCAGTCTTCTGCCGGCGGCTTTGCTTCCCCTGGCTGGCTCCTCGGT
GGGTGTGGAGACACACAGTTCACTTTTCGCAGGCGTATGCCCCACGCATT
TAACCGAATTCTTTCTCTCCTCTTTTACAAGTGCTGAACGAGGTGCCACG
TGCCGAGTCACGGCCTTACCTTCGGCTCCTCTGACTACGTATCATACCCT
CTGGTGTACGTGTTCATTCCCTCCCCTTTGCCTTAACCGTTCCTCCCGTC
CCGCTTATCTTGGGACCACGGAGCAGGACCTTGCGAACCTGCGTGCGACG
CGGAAGGGCTTCAACTCTGCGCTGCGGACGGCGCTGCAGCGATCCGGCAA
GCCCAGCGGCGCACAGACCAGGATGGCCCATGGCCCCGACGGCACCCGCG
GCTTCCCGCCGGGCTGGCGGTCCGTACCATCGCTCTACGCCGGCAAGAAC
CGCGGCGGCGGCGGTTGCGGCGGCGCTGGCGAAGGTGGCGGCGGCAGCAG
CGGCGGCGGGGATGACGCGGCGGACGGAAACGGCGACAAACCCTAGAGCA
AACGGGTGGCATGGACGGGCGAGGGCAGGGCGGCTGTGCGTCGGCTTTTG
TCAGGCGGCGATGGCGGCGGCGTCAGCGCGATCCGGAGGGCCACCGGACG
ATTGCTGCCGGAAGGCGGCGGTCACAGCGGCAGCCGACATGGCGGCAGCA
CTGACTGGGACTACGAGAGGCAGGGGAACGGGGGTAGGAACCGCAGGTCG
CAGCGGCAGAACAGGGGCGGAAACGCCTGCGGCAGGAATTAATTGCAAAG
AAGCGGCGAACCCAGATCCCTTACTTCTGTAACGCTGCAGGGTCTAGCGC
GACTAGTAGTAAGGAGGCAAAGGGGAGCAACAGCCTGTCGACGCGGCGGA
CAAAGGTTCGCTGCAGGACCCGAAGGAGACTGCGGCGGCCAATGCGGCGG
TGGCCAATGCGGTGCGAGCCGCTTGGGCACTGCTGTAGCGGCAGGCCATG
GCGGCTGGAAAGACAACTGAGCGGTCGCCGGCACAGAAGGGTGTCGACAA
CTGAGCGGTCGCCGGCACAGAAGGGTATCGAGTGCCGGCGCACGTCACTT
TGTGACTTTGTGGGCAGTAAAACACAAAAGACGTTGCAGAAGTTGTTTGT
AGCTTGCCCTCTTTTCCGGCTCTCACTTCTCATTCCATTTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5176:1701..3043-

>mRNA_P-wetherbeei_contig5176.2.1 ID=mRNA_P-wetherbeei_contig5176.2.1|Name=mRNA_P-wetherbeei_contig5176.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=696bp|location=Sequence derived from alignment at P-wetherbeei_contig5176:1701..3043- (Phaeothamnion wetherbeei SAG_119_79)
ACGAGGTGGACTTTTTGCTGCCGCCGCAGGACGGGGCGGTGCCGGACCCG
GGGCGGGTGGTCGGGCCCGTCAGGGTGCAGGTGTGTTGTGTGTGTGTTGA
GATGTTTCGGGCAGGCTTTTCTTTCTCCTCTGCGCATTTGCAGTGGAAAG
GCTGCCAGTCTTCTGCCGGCGGCTTTGCTTCCCCTGGCTGGCTCCTCGGT
GGGTGTGGAGACACACAGTTCACTTTTCGCAGGCGTATGCCCCACGCATT
TAACCGAATTCTTTCTCTCCTCTTTTACAAGTGCTGAACGAGGTGCCACG
TGCCGAGTCACGGCCTTACCTTCGGCTCCTCTGACTACGTATCATACCCT
CTGGTGTACGTGTTCATTCCCTCCCCTTTGCCTTAACCGTTCCTCCCGTC
CCGCTTATCTTGGGACCACGGAGCAGGACCTTGCGAACCTGCGTGCGACG
CGGAAGGGCTTCAACTCTGCGCTGCGGACGGCGCTGCAGCGATCCGGCAA
GCCCAGCGGCGCACAGACCAGGATGGCCCATGGCCCCGACGGCACCCGCG
GCTTCCCGCCGGGCTGGCGGTCCGTACCATCGCTCTACGCCGGCAAGAAC
CGCGGCGGCGGCGGTTGCGGCGGCGCTGGCGAAGGTGGCGGCGGCAGCAG
CGGCGGCGGGGATGACGCGGCGGACGGAAACGGCGACAAACCCTAG
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