mRNA_P-wetherbeei_contig5167.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5167.2.1
Unique NamemRNA_P-wetherbeei_contig5167.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5167.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5167contigP-wetherbeei_contig5167:2022..2961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size940
Hectar predicted targeting categorymitochondrion
Exons1
Cds size924
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186775.6481423-UTR-P-wetherbeei_contig5167:2021..20341683186775.6481423-UTR-P-wetherbeei_contig5167:2021..2034Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5167 2022..2034 +
1683186775.6687787-UTR-P-wetherbeei_contig5167:2958..29611683186775.6687787-UTR-P-wetherbeei_contig5167:2958..2961Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5167 2959..2961 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186775.6590815-CDS-P-wetherbeei_contig5167:2034..29581683186775.6590815-CDS-P-wetherbeei_contig5167:2034..2958Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5167 2035..2958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5167.2.1prot_P-wetherbeei_contig5167.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5167 2035..2958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5167.2.1

>prot_P-wetherbeei_contig5167.2.1 ID=prot_P-wetherbeei_contig5167.2.1|Name=mRNA_P-wetherbeei_contig5167.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=308bp
MPRAVCGCVPPSSAFVRGATVPRRARPTVAHGPVPAAAAAVLRAAISLHS
LRSCGGRSNNSSDSGLFNGGGAGCGGGKGRHWPRIKGTGRAVSASVRRMP
LMKNRGHGPSFARAVRYMPGDEPLHRQEGYQKQYLRLPAGSARLAAVEAA
TEVTQPFAAAAAAQTVVTTAGAAAAAPGGTDAVRALTRGPAAADGSAMTA
AVAGVGPAARACLTAAGPVAATGPARMVAAKAVAAKTVLRRPPDVIVKFS
GGAAGGDSLFFPHVEAMEGRQAPRLAAGRPQSSLEGTGVFHRHAVPRPRM
LPTAKCA*
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mRNA from alignment at P-wetherbeei_contig5167:2022..2961+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5167.2.1 ID=mRNA_P-wetherbeei_contig5167.2.1|Name=mRNA_P-wetherbeei_contig5167.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=940bp|location=Sequence derived from alignment at P-wetherbeei_contig5167:2022..2961+ (Phaeothamnion wetherbeei SAG_119_79)
CCCGGACGAATGGATGCCCCGGGCGGTGTGCGGCTGCGTGCCGCCGTCTT
CCGCCTTTGTGAGAGGAGCCACGGTGCCGCGCCGCGCGAGGCCGACGGTT
GCCCACGGGCCGGTGCCGGCGGCCGCGGCGGCGGTACTGCGCGCTGCAAT
ATCTCTGCATAGTCTCCGATCATGCGGCGGAAGAAGCAATAATAGCAGCG
ATAGCGGCCTCTTCAACGGCGGTGGCGCCGGCTGTGGCGGCGGCAAGGGG
AGGCACTGGCCCCGCATCAAGGGAACGGGGCGCGCAGTGTCCGCGAGCGT
AAGGAGAATGCCGCTGATGAAGAACCGGGGACACGGCCCGAGCTTCGCCC
GCGCTGTGCGCTACATGCCTGGCGACGAACCGTTGCACCGCCAGGAAGGG
TATCAAAAGCAGTATTTGCGTCTTCCTGCCGGAAGCGCACGTTTGGCCGC
GGTCGAAGCCGCCACGGAAGTTACCCAACCTTTCGCCGCCGCTGCTGCAG
CGCAAACTGTTGTGACAACCGCGGGGGCTGCCGCCGCTGCTCCTGGAGGC
ACCGACGCTGTTAGAGCTCTAACTCGCGGACCTGCTGCTGCGGACGGAAG
CGCGATGACAGCAGCCGTCGCTGGAGTCGGTCCAGCCGCTCGTGCCTGTC
TAACAGCCGCTGGCCCCGTCGCTGCCACCGGCCCTGCAAGGATGGTAGCA
GCAAAGGCGGTGGCGGCGAAAACGGTGCTGCGGCGGCCGCCAGACGTCAT
CGTCAAATTTTCCGGAGGAGCAGCCGGCGGTGACTCGCTTTTCTTTCCGC
ACGTGGAGGCAATGGAGGGGCGGCAGGCGCCGAGGCTGGCTGCCGGGCGG
CCGCAATCGTCCCTTGAGGGCACGGGGGTCTTTCACAGGCATGCGGTGCC
CCGACCGCGGATGCTGCCGACTGCAAAGTGCGCATGATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5167:2022..2961+

>mRNA_P-wetherbeei_contig5167.2.1 ID=mRNA_P-wetherbeei_contig5167.2.1|Name=mRNA_P-wetherbeei_contig5167.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=924bp|location=Sequence derived from alignment at P-wetherbeei_contig5167:2022..2961+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCCGGGCGGTGTGCGGCTGCGTGCCGCCGTCTTCCGCCTTTGTGAG
AGGAGCCACGGTGCCGCGCCGCGCGAGGCCGACGGTTGCCCACGGGCCGG
TGCCGGCGGCCGCGGCGGCGGTACTGCGCGCTGCAATATCTCTGCATAGT
CTCCGATCATGCGGCGGAAGAAGCAATAATAGCAGCGATAGCGGCCTCTT
CAACGGCGGTGGCGCCGGCTGTGGCGGCGGCAAGGGGAGGCACTGGCCCC
GCATCAAGGGAACGGGGCGCGCAGTGTCCGCGAGCGTAAGGAGAATGCCG
CTGATGAAGAACCGGGGACACGGCCCGAGCTTCGCCCGCGCTGTGCGCTA
CATGCCTGGCGACGAACCGTTGCACCGCCAGGAAGGGTATCAAAAGCAGT
ATTTGCGTCTTCCTGCCGGAAGCGCACGTTTGGCCGCGGTCGAAGCCGCC
ACGGAAGTTACCCAACCTTTCGCCGCCGCTGCTGCAGCGCAAACTGTTGT
GACAACCGCGGGGGCTGCCGCCGCTGCTCCTGGAGGCACCGACGCTGTTA
GAGCTCTAACTCGCGGACCTGCTGCTGCGGACGGAAGCGCGATGACAGCA
GCCGTCGCTGGAGTCGGTCCAGCCGCTCGTGCCTGTCTAACAGCCGCTGG
CCCCGTCGCTGCCACCGGCCCTGCAAGGATGGTAGCAGCAAAGGCGGTGG
CGGCGAAAACGGTGCTGCGGCGGCCGCCAGACGTCATCGTCAAATTTTCC
GGAGGAGCAGCCGGCGGTGACTCGCTTTTCTTTCCGCACGTGGAGGCAAT
GGAGGGGCGGCAGGCGCCGAGGCTGGCTGCCGGGCGGCCGCAATCGTCCC
TTGAGGGCACGGGGGTCTTTCACAGGCATGCGGTGCCCCGACCGCGGATG
CTGCCGACTGCAAAGTGCGCATGA
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