mRNA_P-wetherbeei_contig5167.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5167.1.1
Unique NamemRNA_P-wetherbeei_contig5167.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5167.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5167contigP-wetherbeei_contig5167:1543..1947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size405
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004210.1
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186775.6988761-UTR-P-wetherbeei_contig5167:1542..15751683186775.6988761-UTR-P-wetherbeei_contig5167:1542..1575Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5167 1543..1575 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186775.7099853-CDS-P-wetherbeei_contig5167:1575..19471683186775.7099853-CDS-P-wetherbeei_contig5167:1575..1947Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5167 1576..1947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5167.1.1prot_P-wetherbeei_contig5167.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5167 1576..1947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5167.1.1

>prot_P-wetherbeei_contig5167.1.1 ID=prot_P-wetherbeei_contig5167.1.1|Name=mRNA_P-wetherbeei_contig5167.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
MILFDAVPLNARLTEPRRKRNASRASTSPRRECQWDVDESYAPGLANAHL
SSFLCDTDRKDACRGGVWSKIPRFYPNESAFDHAPDKRPNFAIVDRFYDV
DAGDRATLATRARTSRWQESHALR
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mRNA from alignment at P-wetherbeei_contig5167:1543..1947+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5167.1.1 ID=mRNA_P-wetherbeei_contig5167.1.1|Name=mRNA_P-wetherbeei_contig5167.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig5167:1543..1947+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCTATTGATCAGAGCTCTGTCTTTGTAAGGAATGATCCTCTTCGACGC
GGTGCCGCTCAATGCGCGCCTCACCGAGCCGAGACGAAAGAGGAACGCCA
GTCGTGCATCGACGTCGCCGAGGCGAGAGTGTCAGTGGGACGTAGACGAG
TCGTACGCCCCGGGTCTTGCCAACGCGCATCTATCGAGCTTTCTATGTGA
CACCGACCGGAAGGACGCTTGTCGAGGCGGAGTTTGGTCAAAAATACCTC
GGTTCTATCCTAACGAGTCCGCCTTCGATCATGCCCCAGACAAACGGCCC
AACTTTGCCATCGTCGACCGGTTTTACGACGTGGATGCCGGAGATCGCGC
GACGCTCGCTACCAGAGCGCGCACCTCTCGGTGGCAGGAAAGCCACGCCT
TGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5167:1543..1947+

>mRNA_P-wetherbeei_contig5167.1.1 ID=mRNA_P-wetherbeei_contig5167.1.1|Name=mRNA_P-wetherbeei_contig5167.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig5167:1543..1947+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCCTCTTCGACGCGGTGCCGCTCAATGCGCGCCTCACCGAGCCGAG
ACGAAAGAGGAACGCCAGTCGTGCATCGACGTCGCCGAGGCGAGAGTGTC
AGTGGGACGTAGACGAGTCGTACGCCCCGGGTCTTGCCAACGCGCATCTA
TCGAGCTTTCTATGTGACACCGACCGGAAGGACGCTTGTCGAGGCGGAGT
TTGGTCAAAAATACCTCGGTTCTATCCTAACGAGTCCGCCTTCGATCATG
CCCCAGACAAACGGCCCAACTTTGCCATCGTCGACCGGTTTTACGACGTG
GATGCCGGAGATCGCGCGACGCTCGCTACCAGAGCGCGCACCTCTCGGTG
GCAGGAAAGCCACGCCTTGCGG
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