mRNA_P-wetherbeei_contig516.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig516.4.1
Unique NamemRNA_P-wetherbeei_contig516.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig516.4.1 vs. uniprot
Match: D7FWI4_ECTSI (Histone H2A n=3 Tax=Ochrophyta TaxID=2696291 RepID=D7FWI4_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 3.620e-72
Identity = 122/130 (93.85%), Postives = 125/130 (96.15%), Query Frame = 1 
Query:    7 SGKGXXXXXXXXXXXXTTSKKAPQSRSSRAGLQFPVGRIHRFLKSRVHTHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKTQK 396
            SGKG  XXXXXXXXX  TSKKAPQSRSS+AGLQFPVGRIHRFLKSRVH+HQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NKT K
Sbjct:    2 SGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRIHRFLKSRVHSHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKTTK 131
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BLAST of mRNA_P-wetherbeei_contig516.4.1 vs. uniprot
Match: A0A835Z1F5_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1F5_9STRA)

HSP 1 Score: 211 bits (536), Expect = 6.010e-68
Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 1 
Query:   64 KKAPQSRSSRAGLQFPVGRIHRFLKSRVHTHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKTQK 396
            KKAPQSRS RAGLQFPVGRIHRFLKSRV T QRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLI+KTQK
Sbjct:   28 KKAPQSRSQRAGLQFPVGRIHRFLKSRVQTQQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLISKTQK 138
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BLAST of mRNA_P-wetherbeei_contig516.4.1 vs. uniprot
Match: A0A7S2GSD6_9STRA (Histone H2A n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GSD6_9STRA)

HSP 1 Score: 208 bits (529), Expect = 7.000e-67
Identity = 118/135 (87.41%), Postives = 123/135 (91.11%), Query Frame = 1 
Query:    1 SQSGKGXXXXXXXXXXXXTTSKKAPQSRSSRAGLQFPVGRIHRFLKSRVHTHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKTQKVKK 405
            + SGKG XXXXXXXXXX  TSKKAPQSRSS+AGLQFPVGR+HRFLK  V   QRVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINK  K KK
Sbjct:   15 AMSGKGGXXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRVHRFLKHSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKQSKGKK 149
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BLAST of mRNA_P-wetherbeei_contig516.4.1 vs. uniprot
Match: A0A7S2LGK2_9STRA (Histone H2A n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LGK2_9STRA)

HSP 1 Score: 206 bits (525), Expect = 2.190e-66
Identity = 115/130 (88.46%), Postives = 122/130 (93.85%), Query Frame = 1 
Query:    7 SGKGXXXXXXXXXXXXTTSKKAPQSRSSRAGLQFPVGRIHRFLKSRVHTHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKTQK 396
            SGKG  XXXXXXXXX  TSKKAPQSRSS+AGLQFPVGR+HRFLK+ V + QRVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINK+ K
Sbjct:    2 SGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRVHRFLKTSVMSSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSNK 131
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BLAST of mRNA_P-wetherbeei_contig516.4.1 vs. uniprot
Match: F0XY44_AURAN (Histone H2A n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0XY44_AURAN)

HSP 1 Score: 205 bits (522), Expect = 4.830e-66
Identity = 115/133 (86.47%), Postives = 122/133 (91.73%), Query Frame = 1 
Query:    7 SGKGXXXXXXXXXXXXTTSKKAPQSRSSRAGLQFPVGRIHRFLKSRVHTHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKTQKVKK 405
            SGKG  XXXXXXXXX  TSKKAPQ++S +AGLQFPVGR+HRFLK RV   QRVGAT+AVYTAAILEYLTAEVLELAGNACKDLK+KRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINK+ K KK
Sbjct:    2 SGKGGKXXXXXXXXXAPTSKKAPQTKSLKAGLQFPVGRLHRFLKLRVTASQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKMKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSSKKKK 134
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BLAST of mRNA_P-wetherbeei_contig516.4.1 vs. uniprot
Match: B7G2A5_PHATC (Histone H2A n=4 Tax=Bacillariophyta TaxID=2836 RepID=B7G2A5_PHATC)

HSP 1 Score: 205 bits (522), Expect = 5.150e-66
Identity = 114/129 (88.37%), Postives = 120/129 (93.02%), Query Frame = 1 
Query:    7 SGKGXXXXXXXXXXXXTTSKKAPQSRSSRAGLQFPVGRIHRFLKSRVHTHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKTQ 393
            SGKG  XXXXXXXXX  TSKKAPQSRSS+AGLQFPVGR+HRFLK+ VH   RVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSLINK+Q
Sbjct:    2 SGKGGKXXXXXXXXXAPTSKKAPQSRSSKAGLQFPVGRVHRFLKNSVHQGHRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLINKSQ 130
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BLAST of mRNA_P-wetherbeei_contig516.4.1 vs. uniprot
Match: A0A482SNT5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNT5_9ARCH)

HSP 1 Score: 205 bits (522), Expect = 8.420e-66
Identity = 102/110 (92.73%), Postives = 108/110 (98.18%), Query Frame = 1 
Query:   61 SKKAPQSRSSRAGLQFPVGRIHRFLKSRVHTHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKT 390
            SK+APQSRSSRAGLQFPVGRIHRFLK+RVH+ QRVGAT+AVYT+AI+EYLTAEVLELAGNACKDLKVKRITPRHL LAIRGDEELDTLIKATIAGGGVIPHIHKSLINKT
Sbjct:   27 SKRAPQSRSSRAGLQFPVGRIHRFLKARVHSQQRVGATAAVYTSAIMEYLTAEVLELAGNACKDLKVKRITPRHLLLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKT 136
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BLAST of mRNA_P-wetherbeei_contig516.4.1 vs. uniprot
Match: A0A7S3PQG1_9STRA (Histone H2A n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PQG1_9STRA)

HSP 1 Score: 204 bits (518), Expect = 1.720e-65
Identity = 102/115 (88.70%), Postives = 109/115 (94.78%), Query Frame = 1 
Query:   58 TSKKAPQSRSSRAGLQFPVGRIHRFLKSRVHTHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKTQKVK 402
            TSKKAPQSRSSRAGLQFPVGR+HRFLK+R+ +  RVGAT+AVYTAAILEYLTAEVLELAGNA KDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSL+NK +K K
Sbjct:   16 TSKKAPQSRSSRAGLQFPVGRVHRFLKARISSKNRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLVNKGKKTK 130
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BLAST of mRNA_P-wetherbeei_contig516.4.1 vs. uniprot
Match: K0TER1_THAOC (Histone H2A n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TER1_THAOC)

HSP 1 Score: 205 bits (522), Expect = 2.240e-65
Identity = 119/134 (88.81%), Postives = 125/134 (93.28%), Query Frame = 1 
Query:    7 SGKGXXXXXXXXXXXXTTSKKAPQSRSSRAGLQFPVGRIHRFLKSRVHTHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKTQ-KVKK 405
            SGKGXXXXXXXXXXX  T KKAPQSRSS+AGLQFPVGR+HRFLK+ V   QRVGAT+AVYT+AILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINK+Q K KK
Sbjct:   47 SGKGXXXXXXXXXXXAPTIKKAPQSRSSKAGLQFPVGRVHRFLKNSVQQSQRVGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKSQGKTKK 180
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BLAST of mRNA_P-wetherbeei_contig516.4.1 vs. uniprot
Match: A0A2R5GAR4_9STRA (Histone H2A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GAR4_9STRA)

HSP 1 Score: 202 bits (514), Expect = 8.530e-65
Identity = 118/133 (88.72%), Postives = 121/133 (90.98%), Query Frame = 1 
Query:    7 SGKGXXXXXXXXXXXXTTSKKAPQSRSSRAGLQFPVGRIHRFLKSRVHTHQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKTQKVKK 405
            SGKG XXXXXXXXXXX  SKK PQSRSSRAGLQFPVGR+HRFLK RV   QRVGAT+AVYTAAILEYLTAEVLELAGNA KDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINK   +KK
Sbjct:    2 SGKGGXXXXXXXXXXXPASKKTPQSRSSRAGLQFPVGRVHRFLKQRVALKQRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLINKPGIMKK 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig516.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI4_ECTSI3.620e-7293.85Histone H2A n=3 Tax=Ochrophyta TaxID=2696291 RepID... [more]
A0A835Z1F5_9STRA6.010e-6896.40Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7S2GSD6_9STRA7.000e-6787.41Histone H2A n=1 Tax=Helicotheca tamesis TaxID=3740... [more]
A0A7S2LGK2_9STRA2.190e-6688.46Histone H2A n=1 Tax=Leptocylindrus danicus TaxID=1... [more]
F0XY44_AURAN4.830e-6686.47Histone H2A n=2 Tax=Pelagomonadales TaxID=54409 Re... [more]
B7G2A5_PHATC5.150e-6688.37Histone H2A n=4 Tax=Bacillariophyta TaxID=2836 Rep... [more]
A0A482SNT5_9ARCH8.420e-6692.73Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3PQG1_9STRA1.720e-6588.70Histone H2A n=1 Tax=Aplanochytrium stocchinoi TaxI... [more]
K0TER1_THAOC2.240e-6588.81Histone H2A n=1 Tax=Thalassiosira oceanica TaxID=1... [more]
A0A2R5GAR4_9STRA8.530e-6588.72Histone H2A n=1 Tax=Hondaea fermentalgiana TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig516contigP-wetherbeei_contig516:9250..9657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FWI4
PFAMsHistone,Histone_H2A_C
Model size408
Max annot lvl2759|Eukaryota
KEGG koko:K11251
KEGG Pathwayko04217,ko05034,ko05322,map04217,map05034,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006342,GO:0006355,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0040029,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons1
Evalue5.94e-73
EggNOG OGsCOG5262@1|root,KOG1757@2759|Eukaryota
Descriptionchromatin silencing
Cds size408
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186775.0156384-CDS-P-wetherbeei_contig516:9249..96571683186775.0156384-CDS-P-wetherbeei_contig516:9249..9657Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig516 9250..9657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig516.4.1prot_P-wetherbeei_contig516.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig516 9250..9657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig516.4.1

>prot_P-wetherbeei_contig516.4.1 ID=prot_P-wetherbeei_contig516.4.1|Name=mRNA_P-wetherbeei_contig516.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
SQSGKGGKGGKGGKGGKATTSKKAPQSRSSRAGLQFPVGRIHRFLKSRVH
THQRVGATSAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIR
GDEELDTLIKATIAGGGVIPHIHKSLINKTQKVKK*
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mRNA from alignment at P-wetherbeei_contig516:9250..9657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig516.4.1 ID=mRNA_P-wetherbeei_contig516.4.1|Name=mRNA_P-wetherbeei_contig516.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig516:9250..9657+ (Phaeothamnion wetherbeei SAG_119_79)
TCGCAGTCTGGCAAGGGAGGAAAAGGCGGCAAGGGAGGGAAGGGAGGAAA
GGCCACCACCAGCAAGAAGGCGCCCCAGTCGCGGTCATCGCGCGCTGGGC
TTCAGTTCCCGGTGGGTCGTATTCACCGTTTCCTCAAGTCGCGCGTGCAC
ACGCACCAGCGCGTCGGTGCCACGTCCGCGGTGTACACGGCGGCCATCCT
GGAGTACCTAACGGCCGAGGTACTGGAGCTCGCCGGCAACGCCTGCAAAG
ACCTCAAGGTGAAGCGCATCACGCCGCGCCATTTGCAGCTCGCCATCCGT
GGCGATGAGGAGCTCGACACGCTCATCAAGGCCACCATCGCGGGCGGCGG
CGTCATCCCCCACATCCACAAGTCGCTCATCAACAAGACGCAGAAGGTCA
AGAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig516:9250..9657+

>mRNA_P-wetherbeei_contig516.4.1 ID=mRNA_P-wetherbeei_contig516.4.1|Name=mRNA_P-wetherbeei_contig516.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig516:9250..9657+ (Phaeothamnion wetherbeei SAG_119_79)
TCGCAGTCTGGCAAGGGAGGAAAAGGCGGCAAGGGAGGGAAGGGAGGAAA
GGCCACCACCAGCAAGAAGGCGCCCCAGTCGCGGTCATCGCGCGCTGGGC
TTCAGTTCCCGGTGGGTCGTATTCACCGTTTCCTCAAGTCGCGCGTGCAC
ACGCACCAGCGCGTCGGTGCCACGTCCGCGGTGTACACGGCGGCCATCCT
GGAGTACCTAACGGCCGAGGTACTGGAGCTCGCCGGCAACGCCTGCAAAG
ACCTCAAGGTGAAGCGCATCACGCCGCGCCATTTGCAGCTCGCCATCCGT
GGCGATGAGGAGCTCGACACGCTCATCAAGGCCACCATCGCGGGCGGCGG
CGTCATCCCCCACATCCACAAGTCGCTCATCAACAAGACGCAGAAGGTCA
AGAAGTGA
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