mRNA_P-wetherbeei_contig516.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig516.1.1
Unique NamemRNA_P-wetherbeei_contig516.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig516.1.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 251 bits (642), Expect = 2.800e-81
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 3 
Query:  303 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 710
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_P-wetherbeei_contig516.1.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 251 bits (642), Expect = 4.480e-81
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 3 
Query:  297 KAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 710
            K MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   13 KIMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
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BLAST of mRNA_P-wetherbeei_contig516.1.1 vs. uniprot
Match: A0A6G0YL43_APHCR (Histone H3 (Fragment) n=16 Tax=cellular organisms TaxID=131567 RepID=A0A6G0YL43_APHCR)

HSP 1 Score: 251 bits (641), Expect = 6.140e-81
Identity = 135/146 (92.47%), Postives = 140/146 (95.89%), Query Frame = 3 
Query:  273 HSTPQPTNKAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 710
            HS    +N AMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    4 HSNYSESNPAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 149
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BLAST of mRNA_P-wetherbeei_contig516.1.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 250 bits (639), Expect = 9.740e-81
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 3 
Query:  303 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 710
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
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BLAST of mRNA_P-wetherbeei_contig516.1.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 250 bits (638), Expect = 1.130e-80
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 3 
Query:  303 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 710
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_P-wetherbeei_contig516.1.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 251 bits (642), Expect = 3.260e-80
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 3 
Query:  303 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 710
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
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BLAST of mRNA_P-wetherbeei_contig516.1.1 vs. uniprot
Match: A0A6P6EJI0_OCTDE (histone H3 n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A6P6EJI0_OCTDE)

HSP 1 Score: 249 bits (635), Expect = 5.330e-80
Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 3 
Query:  303 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*VAESG 728
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+ V   G
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERAYVVHKG 142
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BLAST of mRNA_P-wetherbeei_contig516.1.1 vs. uniprot
Match: A0A0N5D645_THECL (Histone domain-containing protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A0N5D645_THECL)

HSP 1 Score: 249 bits (636), Expect = 5.630e-80
Identity = 134/140 (95.71%), Postives = 137/140 (97.86%), Query Frame = 3 
Query:  291 TNKAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 710
            TN  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   24 TNCGMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 163
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BLAST of mRNA_P-wetherbeei_contig516.1.1 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 6.470e-80
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 3 
Query:  303 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 710
            MARTKQTARKSTG +APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_P-wetherbeei_contig516.1.1 vs. uniprot
Match: A0A1L8DWN3_9DIPT (Putative histones h3 and h4 (Fragment) n=1 Tax=Nyssomyia neivai TaxID=330878 RepID=A0A1L8DWN3_9DIPT)

HSP 1 Score: 249 bits (635), Expect = 6.520e-80
Identity = 133/142 (93.66%), Postives = 138/142 (97.18%), Query Frame = 3 
Query:  285 QPTNKAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 710
            Q + K MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   16 QKSRKTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 157
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig516.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4GZ05_9STRA2.800e-8199.26Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A7S1BJN3_9STRA4.480e-8197.83Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
A0A6G0YL43_APHCR6.140e-8192.47Histone H3 (Fragment) n=16 Tax=cellular organisms ... [more]
A0A6V1P6C6_HETAK9.740e-8198.53Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A1Z5K8H0_FISSO1.130e-8098.53Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
K0S7I6_THAOC3.260e-8099.26Histone domain-containing protein n=8 Tax=Bacillar... [more]
A0A6P6EJI0_OCTDE5.330e-8093.66histone H3 n=2 Tax=Euteleostomi TaxID=117571 RepID... [more]
A0A0N5D645_THECL5.630e-8095.71Histone domain-containing protein n=2 Tax=Eukaryot... [more]
D7G4I9_ECTSI6.470e-8098.53Similar to histone H3.2 n=2 Tax=PX clade TaxID=569... [more]
A0A1L8DWN3_9DIPT6.520e-8093.66Putative histones h3 and h4 (Fragment) n=1 Tax=Nys... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig516contigP-wetherbeei_contig516:5279..6254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWI7
PFAMsHistone
Model size976
Max annot lvl2759|Eukaryota
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue3.91e-84
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size552
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186774.9266036-UTR-P-wetherbeei_contig516:5278..55411683186774.9266036-UTR-P-wetherbeei_contig516:5278..5541Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig516 5279..5541 -
1683186774.9579306-UTR-P-wetherbeei_contig516:6093..62541683186774.9579306-UTR-P-wetherbeei_contig516:6093..6254Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig516 6094..6254 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186774.9427757-CDS-P-wetherbeei_contig516:5541..60931683186774.9427757-CDS-P-wetherbeei_contig516:5541..6093Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig516 5542..6093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig516.1.1prot_P-wetherbeei_contig516.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig516 5542..6093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig516.1.1

>prot_P-wetherbeei_contig516.1.1 ID=prot_P-wetherbeei_contig516.1.1|Name=mRNA_P-wetherbeei_contig516.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
MWAARTKRSFAKGKKTGQSASRYSLYHNFRPQNSLRNHSTPQPTNKAMAR
TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIR
RYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVG
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at P-wetherbeei_contig516:5279..6254-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig516.1.1 ID=mRNA_P-wetherbeei_contig516.1.1|Name=mRNA_P-wetherbeei_contig516.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=976bp|location=Sequence derived from alignment at P-wetherbeei_contig516:5279..6254- (Phaeothamnion wetherbeei SAG_119_79)
CAGTTCCGCCTCGCCCACTTTTGGGGGCGGATTGCCGGATATTCCATATG
TACGCGAAGGGAATCAAGCTTAGCAAAACCTTCATATGGTAAGCATGGTT
ATGCGAAGGCGTGGTTATTCTTCTCCCCGCATCCTTACCGCGTCCGCAAT
AATTTTTTGCAATGTGGGCGGCGCGAACGAAGCGTTCTTTCGCCAAAGGG
AAGAAAACTGGCCAATCAGCGAGCAGGTACTCACTCTACCATAATTTCCG
GCCCCAAAATTCGCTGAGAAATCATAGCACACCACAACCAACCAACAAAG
CCATGGCTCGCACGAAGCAGACCGCCCGCAAGTCCACTGGAGGCAAAGCG
CCCCGGAAGCAGCTCGCCACCAAGGCCGCCCGCAAGTCGGCGCCCGCGAC
GGGCGGCGTCAAGAAGCCCCACCGTTACCGCCCGGGCACCGTGGCCCTCC
GCGAGATCCGGCGCTACCAGAAGTCGACGGAGCTCCTCATCCGCAAGCTG
CCGTTCCAGCGCCTCGTCCGCGAGATCGCTCAGGACTTCAAGAGCGACCT
GCGCTTCCAGGGCTCCGCCGTGCTGGCGCTGCAGGAGGCGGCCGAGGCGT
ACCTCGTCGGCCTGTTTGAGGACACCAACCTGTGCGCCATCCACGCCAAG
CGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGGATCCGCGG
TGAGCGCTCATAGGTGGCTGAAAGCGGAGAAGGGAGGTTAGGTTGATGTG
AGAACATCCCTTCCTTCGACGACGATTTCCATGGTGTCTTTTGACACCAC
CCTTTTGAGCACGAAGTGTGAGCCGGCGACGTTTCCTGGTGGTGATGGCT
GGTTGAAAGGGGGGAGAGAACGATGCATGTACATAGCACTTTGTAAAAAA
TAAAACGTTTATATATGAAGAGAAGAAAACTGTGCGCTCTTACCAGAAAT
TTTGGCTTTTCAAATTTTGAATCATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig516:5279..6254-

>mRNA_P-wetherbeei_contig516.1.1 ID=mRNA_P-wetherbeei_contig516.1.1|Name=mRNA_P-wetherbeei_contig516.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig516:5279..6254- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGGCGGCGCGAACGAAGCGTTCTTTCGCCAAAGGGAAGAAAACTGG
CCAATCAGCGAGCAGGTACTCACTCTACCATAATTTCCGGCCCCAAAATT
CGCTGAGAAATCATAGCACACCACAACCAACCAACAAAGCCATGGCTCGC
ACGAAGCAGACCGCCCGCAAGTCCACTGGAGGCAAAGCGCCCCGGAAGCA
GCTCGCCACCAAGGCCGCCCGCAAGTCGGCGCCCGCGACGGGCGGCGTCA
AGAAGCCCCACCGTTACCGCCCGGGCACCGTGGCCCTCCGCGAGATCCGG
CGCTACCAGAAGTCGACGGAGCTCCTCATCCGCAAGCTGCCGTTCCAGCG
CCTCGTCCGCGAGATCGCTCAGGACTTCAAGAGCGACCTGCGCTTCCAGG
GCTCCGCCGTGCTGGCGCTGCAGGAGGCGGCCGAGGCGTACCTCGTCGGC
CTGTTTGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTCACCAT
CATGCCCAAGGACATCCAGCTCGCCCGCCGGATCCGCGGTGAGCGCTCAT
AG
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