mRNA_P-wetherbeei_contig51535.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51535.1.1
Unique NamemRNA_P-wetherbeei_contig51535.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51535.1.1 vs. uniprot
Match: A0A2E7DHR0_9PROT ((2Fe-2S)-binding protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7DHR0_9PROT)

HSP 1 Score: 226 bits (577), Expect = 2.170e-70
Identity = 110/158 (69.62%), Postives = 130/158 (82.28%), Query Frame = 1
Query:    1 SLHGKTVGKMTIGNLLVLDTYGPHQRLTFGRKTLAELVDVPESAWAVDKHIRLIHNCFPNLSVSGILGDHCLVSQIFPGPTPSSTVTRQTVLVAKPPVTEEQRAASELFSELVLQAVRDEDYAVGRTVQDGLKSGANHEFLFGRNEPAVQNYHNTIAR 474
            SLH  TVGK TIGNL+V DTYGPHQR+TFGRK+L +L+D PE  WA D+HIRLIH+ FPNLS+SG+LGDHCLVS +FPGP P +TVTRQ VL A+ P TEEQ AA+E FS +VL+AVRDEDYA+G T+Q GL SGAN  FLFGRNEP +Q+YH  +AR
Sbjct:  233 SLHQDTVGKFTIGNLVVHDTYGPHQRITFGRKSLKDLMDQPEEKWAPDEHIRLIHSVFPNLSISGVLGDHCLVSILFPGPGPDTTVTRQYVLAAQEPKTEEQIAATEGFSNIVLRAVRDEDYAMGFTIQRGLASGANETFLFGRNEPGLQHYHRMVAR 390          
BLAST of mRNA_P-wetherbeei_contig51535.1.1 vs. uniprot
Match: A0A2E5M6C0_9GAMM ((2Fe-2S)-binding protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E5M6C0_9GAMM)

HSP 1 Score: 226 bits (576), Expect = 2.540e-70
Identity = 110/159 (69.18%), Postives = 130/159 (81.76%), Query Frame = 1
Query:    4 LHGKTVGKMTIGNLLVLDTYGPHQRLTFGRKTLAELVDVPESAWAVDKHIRLIHNCFPNLSVSGILGDHCLVSQIFPGPTPSSTVTRQTVLVAKPPVTEEQRAASELFSELVLQAVRDEDYAVGRTVQDGLKSGANHEFLFGRNEPAVQNYHNTIARLM 480
            +HG+TVG+ TIGNLLVLDTYGPHQRLTFGRKTL+EL D PES W   +H+RLIH+ FPNLS+SGILGDHCLVS I PGPTP +T TRQ++LVAK P T  + AASE FS +VLQAV+DEDY +G  +Q  L SGAN +F+FGRNEPA+QNYH  +AR M
Sbjct:  219 VHGRTVGQHTIGNLLVLDTYGPHQRLTFGRKTLSELEDTPESEWNPLEHVRLIHSGFPNLSISGILGDHCLVSHIIPGPTPETTTTRQSILVAKRPETPAEIAASENFSAMVLQAVQDEDYGIGLGIQACLDSGANRDFVFGRNEPALQNYHKWVARFM 377          
BLAST of mRNA_P-wetherbeei_contig51535.1.1 vs. uniprot
Match: A0A0R2W4D6_9GAMM (Rieske domain-containing protein n=1 Tax=SAR92 bacterium BACL16 MAG-120619-bin48 TaxID=1655625 RepID=A0A0R2W4D6_9GAMM)

HSP 1 Score: 220 bits (561), Expect = 5.110e-68
Identity = 106/159 (66.67%), Postives = 128/159 (80.50%), Query Frame = 1
Query:    4 LHGKTVGKMTIGNLLVLDTYGPHQRLTFGRKTLAELVDVPESAWAVDKHIRLIHNCFPNLSVSGILGDHCLVSQIFPGPTPSSTVTRQTVLVAKPPVTEEQRAASELFSELVLQAVRDEDYAVGRTVQDGLKSGANHEFLFGRNEPAVQNYHNTIARLM 480
            +H +TVGK T+GNLLVLDTYGPHQRLTFGRK+L EL+  P   W  ++HIRLIH+ FPNLS+SGILGDHCLVSQ+FPG TP++T+TRQTVLVA  P T +Q AA+E FS L L+AV++EDY +G ++Q GL S AN  FL GRNEPAVQNYH  IA+ M
Sbjct:  219 VHRETVGKYTVGNLLVLDTYGPHQRLTFGRKSLRELIGQPADQWQPEEHIRLIHSGFPNLSISGILGDHCLVSQVFPGDTPATTITRQTVLVANKPETPDQVAATEAFSALTLKAVQEEDYGIGFSIQAGLDSAANDHFLLGRNEPAVQNYHTWIAKFM 377          
BLAST of mRNA_P-wetherbeei_contig51535.1.1 vs. uniprot
Match: A0A3C0KZR7_9GAMM (Rieske domain-containing protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3C0KZR7_9GAMM)

HSP 1 Score: 217 bits (553), Expect = 7.520e-67
Identity = 105/160 (65.62%), Postives = 127/160 (79.38%), Query Frame = 1
Query:    4 LHGKTVGKMTIGNLLVLDTYGPHQRLTFGRKTLAELVDVPESAWAVDKHIRLIHNCFPNLSVSGILGDHCLVSQIFPGPTPSSTVTRQTVLVAKPPVTEEQRAASELFSELVLQAVRDEDYAVGRTVQDGLKSGANHEFLFGRNEPAVQNYHNTIARLMA 483
            +HG TVG+ T+GNLLVLDTYGPHQRLTFGRKTL  L +   + WA   HIRLIH+CFPNLS+SGILGDHCLVSQIFPGP+  ST T Q +L A+PP TE  + A+E FS +VLQAV+DEDY +G  +Q+ + +GAN  F+FGRNEPAVQNYH ++AR MA
Sbjct:  224 VHGATVGQHTVGNLLVLDTYGPHQRLTFGRKTLGALSNQAPADWAPADHIRLIHSCFPNLSISGILGDHCLVSQIFPGPSIDSTQTIQFILSARPPETESDQQATENFSAMVLQAVQDEDYRIGFGIQESILTGANQAFVFGRNEPAVQNYHRSVARFMA 383          
BLAST of mRNA_P-wetherbeei_contig51535.1.1 vs. uniprot
Match: A0A293NNG9_9GAMM (Rieske (2Fe-2S) protein n=2 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A293NNG9_9GAMM)

HSP 1 Score: 214 bits (546), Expect = 9.180e-66
Identity = 103/159 (64.78%), Postives = 128/159 (80.50%), Query Frame = 1
Query:    4 LHGKTVGKMTIGNLLVLDTYGPHQRLTFGRKTLAELVDVPESAWAVDKHIRLIHNCFPNLSVSGILGDHCLVSQIFPGPTPSSTVTRQTVLVAKPPVTEEQRAASELFSELVLQAVRDEDYAVGRTVQDGLKSGANHEFLFGRNEPAVQNYHNTIARLM 480
            +H +TVGK T+GNLLVLDTYGPHQRLTFGR++L +L++ P+  W   +HIRLIH+ FPNLS+SGILGDHCLVSQ+FPG TP++T TRQT+LVAK P TE + AAS+ FS L L+AV++EDY +G  +Q  + S AN  F+FGRNEPAVQNYH  IAR M
Sbjct:  219 VHRETVGKYTVGNLLVLDTYGPHQRLTFGRQSLGDLINQPKDQWNPMEHIRLIHSGFPNLSISGILGDHCLVSQVFPGSTPTTTTTRQTILVAKKPETESEIAASKNFSALTLKAVQEEDYGIGFGIQGCMDSAANDHFIFGRNEPAVQNYHRWIARFM 377          
BLAST of mRNA_P-wetherbeei_contig51535.1.1 vs. uniprot
Match: A0A3S5JX01_9GAMM (Aromatic ring-hydroxylating dioxygenase subunit alpha n=2 Tax=Cellvibrionales TaxID=1706369 RepID=A0A3S5JX01_9GAMM)

HSP 1 Score: 214 bits (545), Expect = 1.050e-65
Identity = 104/159 (65.41%), Postives = 127/159 (79.87%), Query Frame = 1
Query:    4 LHGKTVGKMTIGNLLVLDTYGPHQRLTFGRKTLAELVDVPESAWAVDKHIRLIHNCFPNLSVSGILGDHCLVSQIFPGPTPSSTVTRQTVLVAKPPVTEEQRAASELFSELVLQAVRDEDYAVGRTVQDGLKSGANHEFLFGRNEPAVQNYHNTIARLM 480
            +H  TVGK T+GNLLVLDTYGPHQRLTFGR++L +L++ P   W   +HIRLIH+ FPNLS+SGILGDHCLVSQIFPG TP++T+TRQT+LVAK P TE + AAS+ FS L L+AV++EDY +G  +Q  + S AN  F+FGRNEPAVQNYH  IAR M
Sbjct:  219 VHKDTVGKYTVGNLLVLDTYGPHQRLTFGRQSLGDLLNQPRDQWDPMEHIRLIHSGFPNLSISGILGDHCLVSQIFPGATPTTTITRQTILVAKEPKTESEIAASDNFSALTLKAVQEEDYGIGFGIQGCMDSDANDHFIFGRNEPAVQNYHRWIARFM 377          
BLAST of mRNA_P-wetherbeei_contig51535.1.1 vs. uniprot
Match: A0A2E3DBX0_9GAMM (Rieske domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E3DBX0_9GAMM)

HSP 1 Score: 213 bits (543), Expect = 2.960e-65
Identity = 104/164 (63.41%), Postives = 126/164 (76.83%), Query Frame = 1
Query:    1 SLHGKTVGKMTIGNLLVLDTYGPHQRLTFGRKTLAELVDVPESAWAVDKHIRLIHNCFPNLSVSGILGDHCLVSQIFPGPTPSSTVTRQTVLVAKPPVTEEQRAASELFSELVLQAVRDEDYAVGRTVQDGLKSGANHEFLFGRNEPAVQNYHNTIARLMAGAT 492
            ++HG+TVG+ TIGNLLVLDT+GPHQRLT GRK+L  L   PE  W   +HIRL+H+CFPNLS+SGILGDHCLVS IFPG T  +T T Q +L A+ PVT+E   A+  FSE+VLQAV+DEDY +G  +Q G+KSGANHEFL+G+NEPAVQNYH  I   M   T
Sbjct:  223 TVHGRTVGQHTIGNLLVLDTHGPHQRLTLGRKSLKTLQHEPEKNWEPLEHIRLVHSCFPNLSISGILGDHCLVSMIFPGKTADTTRTLQIILAAEEPVTKEALDATTNFSEMVLQAVQDEDYRLGMLIQSGIKSGANHEFLYGKNEPAVQNYHKWIDHFMRQET 386          
BLAST of mRNA_P-wetherbeei_contig51535.1.1 vs. uniprot
Match: A0A6L8AYI5_9GAMM (Aromatic ring-hydroxylating dioxygenase subunit alpha n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8AYI5_9GAMM)

HSP 1 Score: 212 bits (540), Expect = 6.760e-65
Identity = 100/164 (60.98%), Postives = 129/164 (78.66%), Query Frame = 1
Query:    1 SLHGKTVGKMTIGNLLVLDTYGPHQRLTFGRKTLAELVDVPESAWAVDKHIRLIHNCFPNLSVSGILGDHCLVSQIFPGPTPSSTVTRQTVLVAKPPVTEEQRAASELFSELVLQAVRDEDYAVGRTVQDGLKSGANHEFLFGRNEPAVQNYHNTIARLMAGAT 492
            S+H  TVG+ TIGNLLV D YGPHQRLTFGR+ L+EL D+PES W  D +IR+IH+ FPNLSVSGI+G HCL+S+IFPGPTP +T TRQ++L A    TE+ R ++  FSE+ LQAVRDEDYAV +T+Q  L +GAN +F+ GRNEP +Q+YH T+A +M G++
Sbjct:  218 SVHRSTVGRHTIGNLLVHDLYGPHQRLTFGRRNLSELTDLPESEWQPDNYIRIIHSVFPNLSVSGIVGGHCLLSRIFPGPTPDTTTTRQSILCAPGEQTEQWRESARNFSEMTLQAVRDEDYAVVQTIQAALPAGANSDFIIGRNEPGIQHYHRTVAEMMDGSS 381          
BLAST of mRNA_P-wetherbeei_contig51535.1.1 vs. uniprot
Match: A0A2E8KS66_9GAMM (Rieske domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8KS66_9GAMM)

HSP 1 Score: 207 bits (527), Expect = 6.050e-63
Identity = 100/160 (62.50%), Postives = 124/160 (77.50%), Query Frame = 1
Query:    4 LHGKTVGKMTIGNLLVLDTYGPHQRLTFGRKTLAELVDVPESAWAVD-KHIRLIHNCFPNLSVSGILGDHCLVSQIFPGPTPSSTVTRQTVLVAKPPVTEEQRAASELFSELVLQAVRDEDYAVGRTVQDGLKSGANHEFLFGRNEPAVQNYHNTIARLM 480
            LHG TVGK T+GNLLVLDTYGPHQRLTFGRK+L+EL+D PE  W     HIR IH+ FPNLS+SG+LG HCLVSQIFP  +P ST+TRQT+L AK P TEE++  ++ FS++VLQAV DEDY +G  +Q  +    +H F++G+NEPAVQNYHN I + M
Sbjct:  225 LHGDTVGKHTVGNLLVLDTYGPHQRLTFGRKSLSELIDKPEDEWEEPLDHIRXIHSGFPNLSISGVLGGHCLVSQIFPTSSPDSTITRQTILSAKEPKTEEEKKTTQDFSDMVLQAVVDEDYKMGLQIQTNISKLESHNFVYGKNEPAVQNYHNWIEKFM 384          
BLAST of mRNA_P-wetherbeei_contig51535.1.1 vs. uniprot
Match: A0A6N9BXL9_9GAMM (Aromatic ring-hydroxylating dioxygenase subunit alpha n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6N9BXL9_9GAMM)

HSP 1 Score: 206 bits (525), Expect = 3.760e-62
Identity = 103/162 (63.58%), Postives = 122/162 (75.31%), Query Frame = 1
Query:    1 SLHGKTVGKMTIGNLLVLDTYGPHQRLTFGRKTLAELVDVPESAWAVDKHIRLIHNCFPNLSVSGILGDHCLVSQIFPGPTPSSTVTRQTVLVAKPPVTEEQRAASELFSELVLQAVRDEDYAVGRTVQDGLKSGANHEFLFGRNEPAVQNYHNTIARLMAG 486
            S+H  TVG+ TIGNLLV D YGPHQRLTFGR+ L EL  +PES W  D +IR+IH+ FPNLS+SGI+G HCLVSQIFPGPT  +TVTRQTVL +    T E + A+  FSE+ LQAVRDEDYAV  T+Q  L + AN EFL GRNEP VQ+YH T+ R+M G
Sbjct:  266 SVHRSTVGQYTIGNLLVHDVYGPHQRLTFGRRNLPELETLPESEWRPDDYIRIIHSVFPNLSISGIVGGHCLVSQIFPGPTHETTVTRQTVLCSTAEQTPEWQDAARTFSEMTLQAVRDEDYAVVATIQAALPANANEEFLIGRNEPGVQHYHRTVDRVMNG 427          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51535.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7DHR0_9PROT2.170e-7069.62(2Fe-2S)-binding protein n=1 Tax=Rhodospirillaceae... [more]
A0A2E5M6C0_9GAMM2.540e-7069.18(2Fe-2S)-binding protein n=1 Tax=Gammaproteobacter... [more]
A0A0R2W4D6_9GAMM5.110e-6866.67Rieske domain-containing protein n=1 Tax=SAR92 bac... [more]
A0A3C0KZR7_9GAMM7.520e-6765.63Rieske domain-containing protein n=2 Tax=Gammaprot... [more]
A0A293NNG9_9GAMM9.180e-6664.78Rieske (2Fe-2S) protein n=2 Tax=Porticoccaceae bac... [more]
A0A3S5JX01_9GAMM1.050e-6565.41Aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A2E3DBX0_9GAMM2.960e-6563.41Rieske domain-containing protein n=1 Tax=Gammaprot... [more]
A0A6L8AYI5_9GAMM6.760e-6560.98Aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A2E8KS66_9GAMM6.050e-6362.50Rieske domain-containing protein n=1 Tax=Gammaprot... [more]
A0A6N9BXL9_9GAMM3.760e-6263.58Aromatic ring-hydroxylating dioxygenase subunit al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51535contigP-wetherbeei_contig51535:1..498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1172181.KB911714_gene4779
PFAMsRieske,Ring_hydroxyl_A
Model size498
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.5e-36
EggNOG OGsCOG4638@1|root,COG4638@2|Bacteria,2GKJY@201174|Actinobacteria
DescriptionRieske 2Fe-2S
Cds size471
COG categoryP
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186774.2041678-UTR-P-wetherbeei_contig51535:0..271683186774.2041678-UTR-P-wetherbeei_contig51535:0..27Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig51535 1..27 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186774.2129846-CDS-P-wetherbeei_contig51535:27..4981683186774.2129846-CDS-P-wetherbeei_contig51535:27..498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51535 28..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51535.1.1prot_P-wetherbeei_contig51535.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51535 28..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51535.1.1

>prot_P-wetherbeei_contig51535.1.1 ID=prot_P-wetherbeei_contig51535.1.1|Name=mRNA_P-wetherbeei_contig51535.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
MTIGNLLVLDTYGPHQRLTFGRKTLAELVDVPESAWAVDKHIRLIHNCFP
NLSVSGILGDHCLVSQIFPGPTPSSTVTRQTVLVAKPPVTEEQRAASELF
SELVLQAVRDEDYAVGRTVQDGLKSGANHEFLFGRNEPAVQNYHNTIARL
MAGATR*
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mRNA from alignment at P-wetherbeei_contig51535:1..498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51535.1.1 ID=mRNA_P-wetherbeei_contig51535.1.1|Name=mRNA_P-wetherbeei_contig51535.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig51535:1..498+ (Phaeothamnion wetherbeei SAG_119_79)
TCACTGCACGGCAAAACCGTCGGCAAGATGACCATCGGCAATCTGCTGGT GCTCGATACCTATGGGCCCCATCAGCGACTGACTTTCGGGCGTAAGACCC TGGCTGAACTGGTCGATGTACCGGAGTCGGCATGGGCCGTGGACAAGCAC ATCCGTCTTATCCACAACTGTTTTCCGAACCTCTCGGTGTCCGGCATCCT GGGGGATCACTGTCTGGTCAGTCAGATCTTTCCGGGCCCGACACCAAGTT CCACCGTCACGCGCCAGACCGTGCTGGTGGCCAAGCCGCCCGTCACTGAA GAGCAGCGTGCGGCTTCGGAATTATTCAGCGAGTTGGTGCTGCAGGCGGT GCGCGACGAAGACTATGCGGTCGGGCGTACCGTCCAGGACGGTCTTAAAT CCGGCGCCAATCATGAATTCCTGTTCGGTCGCAATGAACCGGCGGTACAG AACTACCACAACACCATCGCGCGCCTGATGGCGGGCGCTACACGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51535:1..498+

>mRNA_P-wetherbeei_contig51535.1.1 ID=mRNA_P-wetherbeei_contig51535.1.1|Name=mRNA_P-wetherbeei_contig51535.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig51535:1..498+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCATCGGCAATCTGCTGGTGCTCGATACCTATGGGCCCCATCAGCG
ACTGACTTTCGGGCGTAAGACCCTGGCTGAACTGGTCGATGTACCGGAGT
CGGCATGGGCCGTGGACAAGCACATCCGTCTTATCCACAACTGTTTTCCG
AACCTCTCGGTGTCCGGCATCCTGGGGGATCACTGTCTGGTCAGTCAGAT
CTTTCCGGGCCCGACACCAAGTTCCACCGTCACGCGCCAGACCGTGCTGG
TGGCCAAGCCGCCCGTCACTGAAGAGCAGCGTGCGGCTTCGGAATTATTC
AGCGAGTTGGTGCTGCAGGCGGTGCGCGACGAAGACTATGCGGTCGGGCG
TACCGTCCAGGACGGTCTTAAATCCGGCGCCAATCATGAATTCCTGTTCG
GTCGCAATGAACCGGCGGTACAGAACTACCACAACACCATCGCGCGCCTG
ATGGCGGGCGCTACACGCTGA
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