mRNA_P-wetherbeei_contig5153.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5153.1.1
Unique NamemRNA_P-wetherbeei_contig5153.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5153.1.1 vs. uniprot
Match: D7FI32_ECTSI (T-complex protein 1 subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI32_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 3.380e-7
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    1 SMVFDEYGRPFIILREQQAKSRVRGKDAVKVS 96
            SM+FDEYGRPFIILREQQA++R+RGK+A K +
Sbjct:    2 SMIFDEYGRPFIILREQQAQARIRGKEAQKTN 33
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BLAST of mRNA_P-wetherbeei_contig5153.1.1 vs. uniprot
Match: A0A2J8A4P8_9CHLO (T-complex protein 1 subunit epsilon (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A4P8_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 1.010e-6
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:    1 SMVFDEYGRPFIILREQQAKSRVRGKDAVKVS 96
            S+ FDEYGRPFII+REQQ KSRV+G +AVK S
Sbjct:    2 SLAFDEYGRPFIIIREQQTKSRVKGIEAVKAS 33
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BLAST of mRNA_P-wetherbeei_contig5153.1.1 vs. uniprot
Match: B8C5R2_THAPS (T-complex protein 1 subunit epsilon n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5R2_THAPS)

HSP 1 Score: 52.0 bits (123), Expect = 1.180e-6
Identity = 25/37 (67.57%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 SMVFDEYGRPFIILREQQAKSRVRGKDAVKVSKIKGT 111
            SMV+DEYGRPFIIL+EQQAK+RV+G +AVK + +  T
Sbjct:    2 SMVYDEYGRPFIILKEQQAKARVKGLEAVKSNILAAT 38
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BLAST of mRNA_P-wetherbeei_contig5153.1.1 vs. uniprot
Match: A0A1E7FRJ6_9STRA (T-complex protein 1 subunit epsilon n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FRJ6_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.620e-6
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:    1 SMVFDEYGRPFIILREQQAKSRVRGKDAVKVS 96
            SMV+DEYGRPF+IL+EQQAK+RV+G DA K +
Sbjct:    2 SMVYDEYGRPFVILKEQQAKNRVKGVDATKAN 33
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BLAST of mRNA_P-wetherbeei_contig5153.1.1 vs. uniprot
Match: A0A7S2RY11_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RY11_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.210e-6
Identity = 23/30 (76.67%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:    1 SMVFDEYGRPFIILREQQAKSRVRGKDAVK 90
            SM++DEYGRPF+IL+EQQAKSRV+G +AVK
Sbjct:    2 SMIYDEYGRPFLILKEQQAKSRVKGIEAVK 31
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BLAST of mRNA_P-wetherbeei_contig5153.1.1 vs. uniprot
Match: A0A6T5Q400_HETAK (T-complex protein 1 subunit epsilon n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5Q400_HETAK)

HSP 1 Score: 51.2 bits (121), Expect = 2.210e-6
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:    1 SMVFDEYGRPFIILREQQAKSRVRGKDAVK 90
            SMVFDEYGRPFIIL+EQQAK+RV+G +A+K
Sbjct:    2 SMVFDEYGRPFIILKEQQAKARVKGIEAMK 31
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BLAST of mRNA_P-wetherbeei_contig5153.1.1 vs. uniprot
Match: A0A1Z5K2H5_FISSO (T-complex protein 1 subunit epsilon n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2H5_FISSO)

HSP 1 Score: 50.8 bits (120), Expect = 3.030e-6
Identity = 23/30 (76.67%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:    1 SMVFDEYGRPFIILREQQAKSRVRGKDAVK 90
            SMV+DEYGRPFIIL+EQQAK+RV+G +AV+
Sbjct:    2 SMVYDEYGRPFIILKEQQAKARVKGDEAVR 31
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BLAST of mRNA_P-wetherbeei_contig5153.1.1 vs. uniprot
Match: A0A0D2KAF1_9CHLO (T-complex protein 1 subunit epsilon n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KAF1_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 3.450e-6
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:    1 SMVFDEYGRPFIILREQQAKSRVRGKDAVKVS 96
            S+ FDEYGRPFIILREQ+ KSR+RG +AVK +
Sbjct:    2 SLAFDEYGRPFIILREQERKSRIRGVEAVKAN 33
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BLAST of mRNA_P-wetherbeei_contig5153.1.1 vs. uniprot
Match: A0A8J2SYN6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYN6_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 4.030e-6
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    1 SMVFDEYGRPFIILREQQAKSRVRGKDAVK 90
            SMVFDEYGRPFIIL+EQQAKSR++G  A K
Sbjct:    2 SMVFDEYGRPFIILKEQQAKSRIKGLQAQK 31
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BLAST of mRNA_P-wetherbeei_contig5153.1.1 vs. uniprot
Match: A0A7R9VLN7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VLN7_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 4.140e-6
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 SMVFDEYGRPFIILREQQAKSRVRGKDAVK 90
            SMV+DEYGRPFIIL+EQQAK+RV+G +A K
Sbjct:   37 SMVYDEYGRPFIILKEQQAKARVKGAEATK 66
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5153.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI32_ECTSI3.380e-775.00T-complex protein 1 subunit epsilon n=2 Tax=Ectoca... [more]
A0A2J8A4P8_9CHLO1.010e-675.00T-complex protein 1 subunit epsilon (Fragment) n=1... [more]
B8C5R2_THAPS1.180e-667.57T-complex protein 1 subunit epsilon n=1 Tax=Thalas... [more]
A0A1E7FRJ6_9STRA1.620e-671.88T-complex protein 1 subunit epsilon n=3 Tax=Bacill... [more]
A0A7S2RY11_9STRA2.210e-676.67T-complex protein 1 subunit epsilon n=1 Tax=Eucamp... [more]
A0A6T5Q400_HETAK2.210e-680.00T-complex protein 1 subunit epsilon n=1 Tax=Hetero... [more]
A0A1Z5K2H5_FISSO3.030e-676.67T-complex protein 1 subunit epsilon n=2 Tax=Fistul... [more]
A0A0D2KAF1_9CHLO3.450e-671.88T-complex protein 1 subunit epsilon n=1 Tax=Monora... [more]
A0A8J2SYN6_9STRA4.030e-680.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9VLN7_9STRA4.140e-676.67Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5153contigP-wetherbeei_contig5153:547..657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FI32
Preferred nameCCT5
PFAMsCpn60_TCP1
Model size111
Max annot lvl2759|Eukaryota
KEGG koko:K09497
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005886,GO:0005911,GO:0006457,GO:0006458,GO:0008150,GO:0009506,GO:0009987,GO:0016020,GO:0030054,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0055044,GO:0061077,GO:0071944,GO:0101031
Exons1
Evalue1.85e-07
EggNOG OGsCOG0459@1|root,KOG0357@2759|Eukaryota
Descriptionunfolded protein binding
Cds size108
COG categoryO
BRITEko00000,ko03036,ko03110,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186774.171266-CDS-P-wetherbeei_contig5153:546..6541683186774.171266-CDS-P-wetherbeei_contig5153:546..654Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5153 547..654 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186774.1809993-UTR-P-wetherbeei_contig5153:654..6571683186774.1809993-UTR-P-wetherbeei_contig5153:654..657Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5153 655..657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5153.1.1prot_P-wetherbeei_contig5153.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5153 547..654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5153.1.1

>prot_P-wetherbeei_contig5153.1.1 ID=prot_P-wetherbeei_contig5153.1.1|Name=mRNA_P-wetherbeei_contig5153.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=36bp
MVFDEYGRPFIILREQQAKSRVRGKDAVKVSKIKGT
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mRNA from alignment at P-wetherbeei_contig5153:547..657-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5153.1.1 ID=mRNA_P-wetherbeei_contig5153.1.1|Name=mRNA_P-wetherbeei_contig5153.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=111bp|location=Sequence derived from alignment at P-wetherbeei_contig5153:547..657- (Phaeothamnion wetherbeei SAG_119_79)
TCTATGGTATTTGATGAATACGGCAGACCTTTTATTATCTTGAGGGAGCA
GCAAGCAAAATCACGCGTGCGCGGAAAGGATGCCGTCAAGGTAAGCAAAA
TTAAGGGTACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5153:547..657-

>mRNA_P-wetherbeei_contig5153.1.1 ID=mRNA_P-wetherbeei_contig5153.1.1|Name=mRNA_P-wetherbeei_contig5153.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=108bp|location=Sequence derived from alignment at P-wetherbeei_contig5153:547..657- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTATTTGATGAATACGGCAGACCTTTTATTATCTTGAGGGAGCAGCA
AGCAAAATCACGCGTGCGCGGAAAGGATGCCGTCAAGGTAAGCAAAATTA
AGGGTACA
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