mRNA_P-wetherbeei_contig5149.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5149.1.1
Unique NamemRNA_P-wetherbeei_contig5149.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5149.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5149contigP-wetherbeei_contig5149:52..1083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LLD6
Model size900
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.25e-23
EggNOG OGs2BWSQ@1|root,2QVEV@2759|Eukaryota
Cds size900
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186773.3002346-CDS-P-wetherbeei_contig5149:51..4591683186773.3002346-CDS-P-wetherbeei_contig5149:51..459Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5149 52..459 -
1683186773.3214204-CDS-P-wetherbeei_contig5149:591..10831683186773.3214204-CDS-P-wetherbeei_contig5149:591..1083Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5149 592..1083 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5149.1.1prot_P-wetherbeei_contig5149.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5149 52..1083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5149.1.1

>prot_P-wetherbeei_contig5149.1.1 ID=prot_P-wetherbeei_contig5149.1.1|Name=mRNA_P-wetherbeei_contig5149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=300bp
RRVDAVYTDHGASLVLSQARAPHPARVAGVFCRLDAGEWTGLRNGIGVKQ
GLDRHRAQAEREQLRRRRARVEAALKACLATARPLWRLDAPAARQLTALA
AELGGSSVAVLSTALAALLERWVLLSAEAMLIQCAWRVAAARREVHRRYL
RRAETHADTLRRHAVTAIMVAATDKGAAATTAANATAANAMATNAMSAFK
GPLPDPGRRFILSVHSLEHRDVPLKAAVEWWQLCPACKTQRRAHPFFCYS
YARLRYEAFRGVCSCATLRPPERLLLQAYDPTDGRSVELAVTGAELRRRL
back to top

mRNA from alignment at P-wetherbeei_contig5149:52..1083-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5149.1.1 ID=mRNA_P-wetherbeei_contig5149.1.1|Name=mRNA_P-wetherbeei_contig5149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1032bp|location=Sequence derived from alignment at P-wetherbeei_contig5149:52..1083- (Phaeothamnion wetherbeei SAG_119_79)
CGCCGCGTCGACGCCGTCTACACAGACCACGGCGCGTCCCTCGTCCTGAG
TCAGGCGCGGGCGCCCCACCCGGCGCGCGTCGCCGGCGTCTTCTGCCGGT
TGGACGCTGGCGAGTGGACGGGCCTCCGAAACGGCATCGGTGTCAAGCAG
GGCCTGGACCGCCACCGCGCGCAGGCGGAACGCGAGCAGCTGCGACGCCG
CCGTGCGCGCGTGGAGGCGGCGCTCAAGGCGTGCCTGGCGACGGCGCGGC
CGCTGTGGCGGCTGGACGCACCAGCCGCCCGCCAGCTAACTGCGCTGGCG
GCGGAGCTCGGCGGCTCCAGCGTGGCCGTGCTTTCGACGGCACTGGCGGC
GCTGCTGGAACGGTGGGTGCTACTCTCTGCCGAGGCGATGCTGATCCAGT
GCGCGTGGCGGGTGGCCGCAGCGCGGCGCGAGGTTCATCGGCGGTACCTG
CGGCGGGCGGAGACGCACGCGGACACCTTGCGGCGCCATGCCGTCGCTGG
GTGCTTGGCGGCGGCGGCGGTGGCCGCCGCCATCGCCGCCGGGTCACGGG
CGGCGGCGCATTGCGTCCGGCGGCCGCTCATCCGCGCTGCCTTGTTGTGC
ACCTCCGATGAAGCCTCGGCGGAGGTTACGGCCATTATGGTCGCAGCCAC
GGATAAGGGGGCAGCGGCAACGACGGCGGCGAATGCGACGGCGGCGAATG
CGATGGCGACGAATGCGATGTCGGCATTTAAAGGACCGCTGCCGGACCCC
GGGCGCCGCTTTATCCTCTCCGTCCACAGCTTGGAGCACCGCGACGTGCC
GCTCAAGGCGGCCGTCGAGTGGTGGCAGCTGTGCCCGGCCTGCAAGACGC
AGCGGCGGGCTCATCCTTTCTTCTGCTACAGCTACGCCCGGCTGCGATAC
GAAGCTTTCCGAGGCGTCTGCTCCTGCGCGACGCTCCGCCCGCCGGAACG
GCTGCTTCTGCAAGCCTACGACCCAACGGACGGGCGGTCGGTCGAGCTGG
CGGTTACGGGGGCCGAGCTGCGACGGCGGCTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5149:52..1083-

>mRNA_P-wetherbeei_contig5149.1.1 ID=mRNA_P-wetherbeei_contig5149.1.1|Name=mRNA_P-wetherbeei_contig5149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=900bp|location=Sequence derived from alignment at P-wetherbeei_contig5149:52..1083- (Phaeothamnion wetherbeei SAG_119_79)
CGCCGCGTCGACGCCGTCTACACAGACCACGGCGCGTCCCTCGTCCTGAG
TCAGGCGCGGGCGCCCCACCCGGCGCGCGTCGCCGGCGTCTTCTGCCGGT
TGGACGCTGGCGAGTGGACGGGCCTCCGAAACGGCATCGGTGTCAAGCAG
GGCCTGGACCGCCACCGCGCGCAGGCGGAACGCGAGCAGCTGCGACGCCG
CCGTGCGCGCGTGGAGGCGGCGCTCAAGGCGTGCCTGGCGACGGCGCGGC
CGCTGTGGCGGCTGGACGCACCAGCCGCCCGCCAGCTAACTGCGCTGGCG
GCGGAGCTCGGCGGCTCCAGCGTGGCCGTGCTTTCGACGGCACTGGCGGC
GCTGCTGGAACGGTGGGTGCTACTCTCTGCCGAGGCGATGCTGATCCAGT
GCGCGTGGCGGGTGGCCGCAGCGCGGCGCGAGGTTCATCGGCGGTACCTG
CGGCGGGCGGAGACGCACGCGGACACCTTGCGGCGCCATGCCGTTACGGC
CATTATGGTCGCAGCCACGGATAAGGGGGCAGCGGCAACGACGGCGGCGA
ATGCGACGGCGGCGAATGCGATGGCGACGAATGCGATGTCGGCATTTAAA
GGACCGCTGCCGGACCCCGGGCGCCGCTTTATCCTCTCCGTCCACAGCTT
GGAGCACCGCGACGTGCCGCTCAAGGCGGCCGTCGAGTGGTGGCAGCTGT
GCCCGGCCTGCAAGACGCAGCGGCGGGCTCATCCTTTCTTCTGCTACAGC
TACGCCCGGCTGCGATACGAAGCTTTCCGAGGCGTCTGCTCCTGCGCGAC
GCTCCGCCCGCCGGAACGGCTGCTTCTGCAAGCCTACGACCCAACGGACG
GGCGGTCGGTCGAGCTGGCGGTTACGGGGGCCGAGCTGCGACGGCGGCTG
back to top