mRNA_P-wetherbeei_contig5146.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5146.2.1
Unique NamemRNA_P-wetherbeei_contig5146.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5146.2.1 vs. uniprot
Match: A0A835YSN9_9STRA (Protein YIF1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSN9_9STRA)

HSP 1 Score: 251 bits (641), Expect = 3.800e-76
Identity = 146/274 (53.28%), Postives = 172/274 (62.77%), Query Frame = 3
Query:  582 MLHMGGSLARNLLASNISLYEPGVWGVWHSLKYYFAVDNAYVLRKLKALLLPVAKHDWARRRAPPEFGANPAAAAXXXXXXXXXGDIRPGSIGGSGQSPPAGPAAXXXXXXXXXPPRYLRPCLDPNAPDLYLPLMAFITFVLTTGFVKGASGTFTPAALTEATSACVVTQLLEVLLFRLGLYLLGAPAAMLDLVAYTGYKYVALVTNMAAGIAFGWTGYYVXXXXXXXMAAYFILKTMADAVPAGGGSTREFMLLGLSGLQLLVIWWLGYTREL 1403
            ML+MGG++A++ ++SN++ Y+PGV G W  LK+YFAVDNAYVLRK K LLLPV K  W   R P    A  A AA                  GS Q                   ++ RPC+D NAPDLYLPLMAFIT  L +GFVKG +  FTP  L E TS+ +V QLLEVLL RLGLYLLGAPAAMLDLVA+TGYK+VAL  NMA GIA G TGYYV       M AYF+LKTMA AVP G  S R+ M+ G + LQ   IWWLG  ++L
Sbjct:    1 MLNMGGTMAKSFISSNMARYQPGVSGFWALLKHYFAVDNAYVLRKFKVLLLPVLKKSW--HRVP----AEEAGAAQD----------------GSAQF------------------KFARPCVDENAPDLYLPLMAFITHALISGFVKGRASNFTPEVLVEVTSSAMVVQLLEVLLVRLGLYLLGAPAAMLDLVAFTGYKFVALCINMAVGIALGRTGYYVALVYTGLMTAYFMLKTMACAVPLGPAS-RDVMIAGFAALQFASIWWLGDPKDL 233          
BLAST of mRNA_P-wetherbeei_contig5146.2.1 vs. uniprot
Match: A0A6H5JNN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN8_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 8.200e-73
Identity = 137/295 (46.44%), Postives = 176/295 (59.66%), Query Frame = 3
Query:  540 MDWNHWAPAGVNEHMLHMGGSLARNLLASNISLYEPGVWGVWHSLKYYFAVDNAYVLRKLKALLLPVAKHDWARRRAPPEFGANPAAAAXXXXXXXXXGDIRPGSIGGSGQSPPAGPAAXXXXXXXXXPPRYLRPCLDPNAPDLYLPLMAFITFVLTTGFVKGAS-------GTFTPAALTEATSACVVTQLLEVLLFRLGLYLLGAPAAMLDLVAYTGYKYVALVTNMAAGIAFGWTGYYVXXXXXXXMAAYFILKTMADAVPAGGGSTREFMLLGLSGLQLLVIWWLGYTREL 1403
            +DW+ W P G+N  ML++GG++A N L SN++ Y+P V G W++LK YF VDN YVL+KLK LLL V + DW R  +  E                   D RP                           ++ RP  D NAPDLY+PLM+FITFVL TG+ KG++       GTF+P  LTE TS+C+VTQLLEVLL RLGLYLL +PA +LDL+AYTGYKYV L  NM  G+  G T YY+       M ++F+ KTMA  VP G  S RE M+LG + LQLL +WWLG++ +L
Sbjct:  181 LDWHQWTPDGMNAQMLNVGGNVASNFLKSNVAQYQPRVSGYWNTLKVYFTVDNRYVLKKLKVLLLSVLRKDWFRLPSEDEV----------------KDDGRP---------------------------KFERPVADVNAPDLYVPLMSFITFVLLTGYAKGSAAALSDGAGTFSPEVLTEVTSSCIVTQLLEVLLIRLGLYLLNSPAVVLDLIAYTGYKYVGLCINMTVGVFSGRTWYYLALLWTGSMMSFFMFKTMAHTVPTGSAS-REVMILGFAALQLLSMWWLGHSSDL 431          
BLAST of mRNA_P-wetherbeei_contig5146.2.1 vs. uniprot
Match: D7FLH1_ECTSI (Protein YIF1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH1_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 2.880e-69
Identity = 133/294 (45.24%), Postives = 170/294 (57.82%), Query Frame = 3
Query:  540 MDWNHWAPAGVNEHMLHMGGSLARNLLASNISLYEPGVWGVWHSLKYYFAVDNAYVLRKLKALLLPVAKHDWARRRAPPEFGANPAAAAXXXXXXXXXGDIRPGSIGGSGQSPPAGPAAXXXXXXXXXPPRYLRPCLDPNAPDLYLPLMAFITFVLTTGFVKGAS-------GTFTPAALTEATSACVVTQLLEVLLFRLGLYLLGAPAAMLDLVAYTGYKYVALVTNMAAGIAFGWTGYYVXXXXXXXMAAYFILKTMADAVPAGGGSTREFMLLGLSGLQLLVIWWLGYTRE 1400
            +DW+ W P G+N  ML++GG++A N L SN++ Y+P V G W++LK YF VDN YVL+KLK LLL V K DW R  +  E   +                                             P++ RP  D NAPDLY+PLM+FITFVL TG+ KG++       GTF+P  LTE TS+C+VTQLLEVLL RLGLYLL +PA +LDLVAYTGYKYV L  NM  G+  G T YY+       M ++F+ KTMA  VP G  S RE M+LG + LQ L +  +G  R+
Sbjct:   54 LDWHQWTPDGMNAQMLNVGGNVASNFLKSNVAQYQPRVSGYWNTLKVYFTVDNRYVLKKLKVLLLSVLKKDWFRLPSEDEVKDDQGR------------------------------------------PKFERPVADVNAPDLYVPLMSFITFVLLTGYAKGSAAALSDGAGTFSPEVLTEVTSSCIVTQLLEVLLIRLGLYLLNSPAVVLDLVAYTGYKYVGLCINMTVGVFSGKTWYYLALLWTGSMMSFFMFKTMAHTVPTGSAS-REVMILGFAPLQFLSMGGVGQWRD 304          
BLAST of mRNA_P-wetherbeei_contig5146.2.1 vs. uniprot
Match: W7TGL4_9STRA (Protein YIF1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGL4_9STRA)

HSP 1 Score: 181 bits (460), Expect = 7.830e-48
Identity = 116/274 (42.34%), Postives = 144/274 (52.55%), Query Frame = 3
Query:  564 AGVNEHMLHMGGSLARNLLASNISLYEPGVWGVWHSLKYYFAVDNAYVLRKLKALLLPVAKHDWARRRAPPEFGANPAAAAXXXXXXXXXGDIRPGSIGGSGQSPPAGPAAXXXXXXXXXPPRYLRPCLDPNAPDLYLPLMAFITFVLTTGFVKGASGTFTPAALTEATSACVVTQLLEVLLFRLGLYLLGAPAAMLDLVAYTGYKYVALVTNMAAGIAFGWTGYYVXXXXXXXMAAYFILKTMADAVPAGGGSTR-------EFMLLGLSGLQ 1364
            A  N     MG  + +  L +++S Y P V  VWH LKYYFAV++ YV RKL  L+ P  K  W  RR   + GA  ++ A              G  GG+  S  A              P+Y  P LD NAPDLY+PLMAF+T+VL TG+ KG   +FTP  L E TS+C+V QLLE+ + RLGLYLL APA +LDL+A TGYKYVAL  NM  G+  G   Y           AYF LKT A AV   G           E M+LG + +Q
Sbjct:  103 AAANSQAFSMGVGMGQEYLNASVSRYTPWVTSVWHGLKYYFAVNHHYVKRKLFTLVFPYRKRHW--RRQMKDSGAAGSSGAY-------------GQQGGNADSASA-----------MYRPQYQVPMLDENAPDLYIPLMAFVTYVLVTGYAKGTKNSFTPEVLVEVTSSCLVMQLLEIAVIRLGLYLLQAPATLLDLLAVTGYKYVALNFNMVLGLNLGPRVYLAAMVYTGLAMAYFSLKTFAQAVRLAGPRDLASAPVRVELMVLGFALMQ 350          
BLAST of mRNA_P-wetherbeei_contig5146.2.1 vs. uniprot
Match: A0A7S3JT16_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JT16_9STRA)

HSP 1 Score: 170 bits (431), Expect = 2.410e-43
Identity = 101/263 (38.40%), Postives = 135/263 (51.33%), Query Frame = 3
Query:  630 ISLYEPGVWGVWHSLKYYFAVDNAYVLRKLKALLLPVAKHDWARRRAPPEFGANPAAAAXXXXXXXXXGDIRPGSIGGSGQSPPAGPAAXXXXXXXXXPPRYLRPCLDPNAPDLYLPLMAFITFVLTTGFVKGASGTFTPAALTEATSACVVTQLLEVLLFRLGLYLLGAPAAMLDLVAYTGYKYVALVTNMAAGIAFGWTGYYVXXXXXXXMAAYFILKTMADAVPA-----GGGSTREFMLLGLSGLQLLVIWWLGYTREL 1403
            +S + PG    W  L+ YFAV + Y L KL+ALL+P  K  W R R       +P                        G++    P +         P RY  P  D NAPDLY+PL+AF+TF L +G+VKG SG FTP  L +  S C + Q+ E+ L+ +GLY  GA   +LD+  +TGYKYVAL  N+  G+ FG   YY         A+Y++LKTMA  VP        G  RE ++L L  +Q + IW+LGY REL
Sbjct:  195 MSRWMPGFASFWSKLRSYFAVSHRYTLSKLRALLIPWTKKAWRRERLASNMPTSPP-----------------------GENAAGRPVSGE-------PIRYALPVDDDNAPDLYIPLVAFLTFALVSGYVKGTSGKFTPQVLAQIVSNCALFQVFELALYSIGLYASGATIPLLDIAVHTGYKYVALCVNLLFGLVFGLRAYYCSLAYTALAASYYMLKTMAQTVPTKRDPRAVGPKREVVVLLLGAIQGMSIWFLGYNREL 427          
BLAST of mRNA_P-wetherbeei_contig5146.2.1 vs. uniprot
Match: A0A7S2LHT7_9STRA (Protein YIF1 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LHT7_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.980e-42
Identity = 101/291 (34.71%), Postives = 144/291 (49.48%), Query Frame = 3
Query:  555 WAPAGVNEHM-----LHMGGSLARNLLASNISLYEPGVWGVWHSLKYYFAVDNAYVLRKLKALLLPVAKHDWARRRAPPEFGANPAAAAXXXXXXXXXGDIRPGSIGGSGQSPPAGPAAXXXXXXXXXPPRYLRPCLDPNAPDLYLPLMAFITFVLTTGFVKGASGTFTPAALTEATSACVVTQLLEVLLFRLGLYLLGAPAAMLDLVAYTGYKYVALVTNMAAGIAFGWTGYYVXXXXXXXMAAYFILKTMADAVP---AGGGSTREFMLLGLSGLQLLVIWWLGYTREL 1403
            W PA +N  M     ++M     +  LA+  +   PG+  +  +L+YYFAVDN+YVL K++ +L P  K DW R  A                     G+++                             Y  P  D NAPDLY+P M+ +T+VL    + G+ G FTP AL E T+ C VTQ+LEVL  RLG Y++  P ++LD+  +TGYKY+ L  NM  G+ FG+  YY          A+F+L+TMA+ VP   A  G  RE M++  +  Q L +WWL  T+ L
Sbjct:  117 WNPANINSMMKNDMVMNMAYDGGKAFLANGAARMIPGLELLMVTLRYYFAVDNSYVLHKMQRVLFPFLKKDWKRLEA------------------EGHGNVK-----------------------------YALPRFDENAPDLYIPFMSLVTYVLLCALLFGSKGQFTPEALPEITTRCFVTQILEVLAIRLGHYVMQVPCSLLDMFCFTGYKYMGLCVNMLVGLFFGYWPYYGTMTWTASATAFFMLRTMANNVPRITATNGPKREVMVMVFAASQALTMWWLSQTKLL 360          
BLAST of mRNA_P-wetherbeei_contig5146.2.1 vs. uniprot
Match: A0A024UUY6_9STRA (Protein YIF1 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUY6_9STRA)

HSP 1 Score: 159 bits (403), Expect = 3.820e-40
Identity = 95/278 (34.17%), Postives = 136/278 (48.92%), Query Frame = 3
Query:  579 HMLHMGGSLARNLLASNISLYEPGVWGVWHSLKYYFAVDNAYVLRKLKALLLPVAKHDWARRRAPPEFGANPAAAAXXXXXXXXXGDIRPGSIGGSGQSPPAGPAAXXXXXXXXXPPRYLRPCLDPNAPDLYLPLMAFITFVLTTGFVKGASGTFTPAALTEATSACVVTQLLEVLLFRLGLYLLGAPAAMLDLVAYTGYKYVALVTNMAAGIAFGWTGYYVXXXXXXXMAAYFILKTMADAVPAGGGSTREF---MLLGLSGLQLLVIWWLGYTREL 1403
            + ++ G  L  + + S +     G   ++ S+KYYF V+N YV+ +LK LL P    DW RR    E      A                                            Y  P +D NAPDLY+PLM+F+T++L  G++KGASG F P  +T+ +++C + QLLE+ L +LGLYLL +    LDLV++TGYKYVALV N    +  G+  YY          ++F L  +   VP      R F   MLL ++ LQLL+IWW  Y+ E+
Sbjct:  119 YAMNHGAKLMEDQVKSFMPGAAAGALNMFGSVKYYFTVNNTYVVHRLKMLLCPFLHKDW-RRIVQSEGNGTDVA--------------------------------------------YAPPSMDKNAPDLYIPLMSFVTYILIVGYIKGASGRFNPDVITDVSTSCCLLQLLEICLMKLGLYLLNSQINWLDLVSFTGYKYVALVLNTVVHLVLGYLPYYAVLAYTGLATSFFTLNGLKGTVPEPNHDQRRFRNYMLLAMAVLQLLLIWWNSYSSEI 351          
BLAST of mRNA_P-wetherbeei_contig5146.2.1 vs. uniprot
Match: F0YMN5_AURAN (Protein YIF1 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMN5_AURAN)

HSP 1 Score: 156 bits (394), Expect = 4.130e-40
Identity = 104/256 (40.62%), Postives = 130/256 (50.78%), Query Frame = 3
Query:  633 SLYEPGVWGVWHSLKYYFAVDNAYVLRKLKALLLPVAKHDWARRRAPPEFGANPAAAAXXXXXXXXXGDIRPGSIGGSGQSPPAGPAAXXXXXXXXXPPRYLRPCLDPNAPDLYLPLMAFITFVLTTGFVKGASGTFTPAALTEATSACVVTQLLEVLLFRLGLYLLGAP-AAMLDLVAYTGYKYVALVTNMAAGIAFGWTGYYVXXXXXXXMAAYFILKTMADAVPA---GGGSTREFMLLGLSGLQLLVIWWLG 1388
            S + PGV   W SL+ YFAV +A V  KL+A+L P AK  W R+RA    G                GD R G++ G                       +  P  D NAPD Y+PL+AF+TF L  G+V+G+ GTFTP  L    S C   Q+LE+ L+ LGLYLLGA    +LD+  +TGYKYVAL  N  A    G   YY         A+YF+LKTMA AVPA      + RE ++L    LQ L IW LG
Sbjct:   22 SAWLPGVAAFWASLRVYFAVSHASVAGKLRAVLFPFAKKQWRRKRAEELDGG---------------GDARAGALHG-----------------------HALPLEDDNAPDGYVPLVAFVTFALVAGYVRGSRGTFTPEVLASIFSWCAGLQMLEIALYSLGLYLLGAHNVPVLDVACFTGYKYVALSINAIAHFFGGERAYYAALFWTGLSASYFMLKTMAQAVPAELESSAARREIVVLVFGVLQGLSIWVLG 239          
BLAST of mRNA_P-wetherbeei_contig5146.2.1 vs. uniprot
Match: A0A1V9YK20_9STRA (Protein YIF1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YK20_9STRA)

HSP 1 Score: 159 bits (402), Expect = 5.390e-40
Identity = 96/265 (36.23%), Postives = 132/265 (49.81%), Query Frame = 3
Query:  618 LASNISLYEPGVWGVWHSLKYYFAVDNAYVLRKLKALLLPVAKHDWARRRAPPEFGANPAAAAXXXXXXXXXGDIRPGSIGGSGQSPPAGPAAXXXXXXXXXPPRYLRPCLDPNAPDLYLPLMAFITFVLTTGFVKGASGTFTPAALTEATSACVVTQLLEVLLFRLGLYLLGAPAAMLDLVAYTGYKYVALVTNMAAGIAFGWTGYYVXXXXXXXMAAYFILKTMADAVPAGGGSTREF---MLLGLSGLQLLVIWWLGYTREL 1403
            + + IS + PG  G + S+KYYF V+N+YVL +LK LL+P   ++W RRR   E     A A                                           Y  P  D NAPDLY+PLM+F T++L  GF+KG SG F P  + +    C+V Q LE+ + +  L++L +  + LDLV++TGYKYV LV N    I  G   YYV          YF+L+ +  +VP     +R F   MLLGLS  Q+++IWW  YT EL
Sbjct:  130 MENKISSFVPGAKGAFGSVKYYFTVNNSYVLTRLKMLLVPFLHNNW-RRRIMTEASNGQADAV------------------------------------------YYPPSEDVNAPDLYIPLMSFATYILLVGFIKGTSGQFNPDVIGDVGMYCIVLQFLEIAIMKGCLHVLNSSVSFLDLVSFTGYKYVPLVLNTVVHIVLGSLAYYVALVYTGLTTTYFMLQCLKGSVPEPSYESRRFRTYMLLGLSAAQMVLIWWNSYTGEL 351          
BLAST of mRNA_P-wetherbeei_contig5146.2.1 vs. uniprot
Match: W4F9U6_9STRA (Protein YIF1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4F9U6_9STRA)

HSP 1 Score: 159 bits (402), Expect = 6.200e-40
Identity = 95/278 (34.17%), Postives = 136/278 (48.92%), Query Frame = 3
Query:  579 HMLHMGGSLARNLLASNISLYEPGVWGVWHSLKYYFAVDNAYVLRKLKALLLPVAKHDWARRRAPPEFGANPAAAAXXXXXXXXXGDIRPGSIGGSGQSPPAGPAAXXXXXXXXXPPRYLRPCLDPNAPDLYLPLMAFITFVLTTGFVKGASGTFTPAALTEATSACVVTQLLEVLLFRLGLYLLGAPAAMLDLVAYTGYKYVALVTNMAAGIAFGWTGYYVXXXXXXXMAAYFILKTMADAVPAGGGSTREF---MLLGLSGLQLLVIWWLGYTREL 1403
            + ++ G  +  + + S +     G   ++ S+KYYF V+N YV+ +LK LL P    DW  RR     G N                                               Y  P +D NAPDLY+PLM+F+T++L  G++KGASG F P  +TE ++ C + QL+E+ L +LGLYLL +    LDLV++TGYKYVALV N    +  G+  YYV         ++F L  +   VP      R F   MLL ++ LQLL+IWW  Y+ E+
Sbjct:  124 YAMNHGAKMMEDQVKSFMPGAAAGALNMFGSVKYYFTVNNTYVVHRLKMLLCPFIHKDW--RRIVQNEGNNTGVDVV-----------------------------------------YAPPSMDKNAPDLYIPLMSFVTYILIVGYIKGASGRFNPDVITEVSTYCCLMQLVEICLMKLGLYLLNSQINWLDLVSFTGYKYVALVINTVVHLILGYIPYYVVLAYTGIATSFFTLNGLKGTVPEPNHDQRRFRNYMLLAMAVLQLLLIWWNSYSSEI 358          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5146.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSN9_9STRA3.800e-7653.28Protein YIF1 n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A6H5JNN8_9PHAE8.200e-7346.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLH1_ECTSI2.880e-6945.24Protein YIF1 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
W7TGL4_9STRA7.830e-4842.34Protein YIF1 n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A7S3JT16_9STRA2.410e-4338.40Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2LHT7_9STRA1.980e-4234.71Protein YIF1 n=1 Tax=Leptocylindrus danicus TaxID=... [more]
A0A024UUY6_9STRA3.820e-4034.17Protein YIF1 n=1 Tax=Aphanomyces invadans TaxID=15... [more]
F0YMN5_AURAN4.130e-4040.63Protein YIF1 n=1 Tax=Aureococcus anophagefferens T... [more]
A0A1V9YK20_9STRA5.390e-4036.23Protein YIF1 n=1 Tax=Achlya hypogyna TaxID=1202772... [more]
W4F9U6_9STRA6.200e-4034.17Protein YIF1 n=2 Tax=Aphanomyces astaci TaxID=1120... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5146contigP-wetherbeei_contig5146:1055..3826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLH1
Preferred nameYIF1B
PFAMsYIF1
Model size1824
Max annot lvl2759|Eukaryota
KEGG koko:K08023,ko:K20362
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000902,GO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0009306,GO:0009653,GO:0009987,GO:0010033,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0023052,GO:0030134,GO:0030135,GO:0030173,GO:0030968,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032502,GO:0032940,GO:0032989,GO:0033036,GO:0033554,GO:0034613,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036498,GO:0042175,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0065007,GO:0070727,GO:0070887,GO:0071310,GO:0071702,GO:0071705,GO:0071840,GO:0097708,GO:0098588,GO:0098791,GO:0098827
Exons4
Evalue9.1e-72
EggNOG OGsCOG5197@1|root,KOG3094@2759|Eukaryota
DescriptionER to Golgi vesicle-mediated transport
Cds size1317
COG categoryI
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5146.2.1prot_P-wetherbeei_contig5146.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5146 1241..3411 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186773.0897374-UTR-P-wetherbeei_contig5146:1054..11091683186773.0897374-UTR-P-wetherbeei_contig5146:1054..1109Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5146 1055..1109 +
1683186773.1033993-UTR-P-wetherbeei_contig5146:1203..12401683186773.1033993-UTR-P-wetherbeei_contig5146:1203..1240Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5146 1204..1240 +
1683186773.1554768-UTR-P-wetherbeei_contig5146:3411..38261683186773.1554768-UTR-P-wetherbeei_contig5146:3411..3826Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5146 3412..3826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186773.114568-CDS-P-wetherbeei_contig5146:1240..21571683186773.114568-CDS-P-wetherbeei_contig5146:1240..2157Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5146 1241..2157 +
1683186773.1341732-CDS-P-wetherbeei_contig5146:2369..26431683186773.1341732-CDS-P-wetherbeei_contig5146:2369..2643Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5146 2370..2643 +
1683186773.1458745-CDS-P-wetherbeei_contig5146:3285..34111683186773.1458745-CDS-P-wetherbeei_contig5146:3285..3411Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5146 3286..3411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5146.2.1

>prot_P-wetherbeei_contig5146.2.1 ID=prot_P-wetherbeei_contig5146.2.1|Name=mRNA_P-wetherbeei_contig5146.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=439bp
MSLPRPGGPAAAQTGERRRPPDGSVAQTGQQGVTMAPITPQASGFPQPAA
YAPTKYGQGNGYGVAAAGGGGGSSLGMGSYSGSAGGGPVLGGYGGAPSAA
GYGGAPSAAGYGGPAAAGVGYGGAPSGVDVGAGGAGGYGAQRAGPPGGEM
DWNHWAPAGVNEHMLHMGGSLARNLLASNISLYEPGVWGVWHSLKYYFAV
DNAYVLRKLKALLLPVAKHDWARRRAPPEFGANPAAAAGAAGAAAAAGDI
RPGSIGGSGQSPPAGPAAPPAGPVAPPPPRYLRPCLDPNAPDLYLPLMAF
ITFVLTTGFVKGASGTFTPAALTEATSACVVTQLLEVLLFRLGLYLLGAP
AAMLDLVAYTGYKYVALVTNMAAGIAFGWTGYYVAFAWTGLMAAYFILKT
MADAVPAGGGSTREFMLLGLSGLQLLVIWWLGYTRELV*
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mRNA from alignment at P-wetherbeei_contig5146:1055..3826+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5146.2.1 ID=mRNA_P-wetherbeei_contig5146.2.1|Name=mRNA_P-wetherbeei_contig5146.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2772bp|location=Sequence derived from alignment at P-wetherbeei_contig5146:1055..3826+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGGATTTACCTTTTCCCCTCTATCGCTGGTTCCAGGATTACCTCCAAA TAAAGGTGAGCAGTGCCACTACATCGGGGTGCTCCATCCCGGCTTTTTCG CGCGGACGTCTTTAGTTTACCGAAACTTCCGTTTTTTCAAAGAAAGCAGG TTAGCGCTCTCCAACCTTGGACCAAGCGAACGAACGATGAGCTTACCGAG ACCAGGAGGACCTGCGGCTGCCCAGACTGGCGAGCGGCGGCGGCCGCCGG ATGGGTCTGTAGCACAAACGGGGCAGCAAGGCGTGACCATGGCTCCGATA ACGCCTCAGGCTTCCGGTTTTCCACAGCCAGCGGCGTATGCTCCAACAAA ATACGGTCAAGGCAACGGATACGGCGTGGCTGCTGCTGGCGGCGGCGGCG GCAGCAGCTTAGGAATGGGTAGCTATTCTGGGAGCGCTGGGGGTGGGCCT GTTCTAGGCGGCTATGGCGGCGCACCTTCCGCTGCTGGCTACGGCGGCGC ACCGTCCGCTGCTGGATACGGCGGCCCCGCTGCTGCGGGTGTTGGCTACG GCGGGGCACCAAGCGGCGTCGACGTCGGTGCCGGCGGTGCCGGCGGCTAT GGCGCGCAGCGTGCGGGGCCGCCCGGTGGCGAGATGGACTGGAACCACTG GGCCCCGGCGGGCGTCAACGAGCACATGCTACACATGGGCGGCAGCCTGG CCCGAAATCTGCTGGCGAGCAACATTTCGCTCTATGAGCCCGGTGTCTGG GGCGTCTGGCACTCGTTGAAGTATTACTTCGCCGTCGACAACGCCTACGT GCTGCGCAAGCTCAAGGCGCTGCTGCTACCTGTCGCTAAGCACGACTGGG CCCGCCGCCGCGCGCCGCCAGAGTTCGGCGCCAATCCCGCCGCTGCCGCC GGTGCAGCCGGTGCCGCTGCTGCCGCAGGGGATATAAGACCCGGCAGCAT CGGCGGCAGTGGCCAGTCGCCGCCGGCGGGGCCGGCAGCGCCGCCAGCGG GGCCTGTGGCGCCGCCGCCACCGCGGTACCTGCGGCCGTGCCTCGACCCC AACGCGCCCGACCTTTACCTGCCGCTGATGGCCTTCATCACCTTCGTGCT GACGTAAGAAGTTGATGTCTATTGTAACCTTCACATTTTTTTGCGTTTTT CCTCCAGACTTGCCAGGAGAGCTCAGTTTCCAATTGGTTCAATCTCGTTC CGCGGTCCATGCACGCACGAAAGTAGGAGCTTCATTAATCGACGAAATGT GAAGCTTCGTTGCTTGCAAACTTGGAAGAAAGTTATCTCCATTTTATCTG CTCCAATCGTAACAGGACGGGCTTTGTGAAGGGCGCCTCGGGCACCTTCA CCCCGGCCGCCCTGACCGAGGCCACCTCGGCCTGCGTCGTCACCCAGCTG CTGGAAGTGCTCCTTTTCCGGCTGGGGCTTTACCTGCTGGGGGCTCCGGC GGCGATGCTCGACCTCGTGGCATACACGGGCTACAAGTACGTGGCGCTGG TGACCAACATGGCGGCGGGCATCGCCTTCGGCTGGACGGGCTACTATGTG GCGTTTGCGTGGACGGGGCTCATGGCCGCCTACTTCATTGTGAGCTTTCT TTTTTGGTTCTTTGAGTATTGGGTAAAATTTTCTTTGGTTTTTATAGCTG TTTCCTCTTCGTCTCATTTCGGTGGGCTGCTATACGTCGCCTTCGCATGG ACGGGCCTCCTTTCCGCCTACTTCATCGTGACTTTTCTTTTGGTTCTTCT GAGTTGTGGCGAGATGTCTTATCTGTTTTCATGTATAATCGCTGCTTTCT GCCGCGTGTTATTGAGGGCTATGCTACCACGTGACGTTCGCATGGATGGG GCTCGTGACCGCCTACTTCATCGTTTAGTGATGCAGTTTGATTATTCTCT CTCCTTTTTTGCCTTGCCGAGCCACTACTTGGTTCTCTTCTTTTGCTTTA CCAAGAAATGTTTTGGGGGCTGATGGCTGCCTGCGTCATAGTGAGTTTCT GGTTTGTGGCAGGCTCGTTCGTTTTTCTGAGAACCTCCTGTATTCCCTCA ATTCCATTTATGGCCAGAACGGTACGTCTACCGAGAAACTGCAACCGTTC AGGCATTACATGCACTGTTTAGAGATGGTTGAAAAACAGAAAGTGGAAGT TATAACTCTCAAACCGCTCAAAAACAACCGCTGACGGGTTCCGTGTGCTG TTTTTTCCTCTTCAATATTTTCTGCGGGCAGCTTAAGACGATGGCGGATG CTGTGCCGGCGGGCGGCGGCTCCACCCGTGAGTTCATGCTGCTGGGCTTA TCGGGCCTCCAGCTCCTTGTCATTTGGTGGCTCGGCTACACCCGGGAGCT CGTCTAGTCGGGGTAGCGGTGGCGCGACCGGCGACTGCCGGCGGCGATGT GCGGCGACCACAGTTACACTCGCGGCGGCGACGATGGCGGCGGCGGCGGC GGCAGCGGCAGTGGCCGATGACGGCGATGATGCTGGAGGCAGCAGCGGTG GCGCCGAAGCCAACGTCGCGGGCAGTGCCGCAGCGGCGAGGTCCGGCGAA GCCCGGCGGAATAAGGTAGCCAAGGGGCGAGAGTGTTGGACCGGACAGCG GCGGCAGCGGTTCCTTGCATGAAATGTCAGCGGCTGCAGCCGCCGTGACG AGAGACGGTGCAGAGCGGCCATGGCAGCAGTAACGATAGCGGAGACGCAG CGGCGCCACCAGCAAACAGGTCGGCAGCAGCAGAAACATCACTTTTCAAT AAAATAAGACAAGCTTTGCCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5146:1055..3826+

>mRNA_P-wetherbeei_contig5146.2.1 ID=mRNA_P-wetherbeei_contig5146.2.1|Name=mRNA_P-wetherbeei_contig5146.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1317bp|location=Sequence derived from alignment at P-wetherbeei_contig5146:1055..3826+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTTACCGAGACCAGGAGGACCTGCGGCTGCCCAGACTGGCGAGCG
GCGGCGGCCGCCGGATGGGTCTGTAGCACAAACGGGGCAGCAAGGCGTGA
CCATGGCTCCGATAACGCCTCAGGCTTCCGGTTTTCCACAGCCAGCGGCG
TATGCTCCAACAAAATACGGTCAAGGCAACGGATACGGCGTGGCTGCTGC
TGGCGGCGGCGGCGGCAGCAGCTTAGGAATGGGTAGCTATTCTGGGAGCG
CTGGGGGTGGGCCTGTTCTAGGCGGCTATGGCGGCGCACCTTCCGCTGCT
GGCTACGGCGGCGCACCGTCCGCTGCTGGATACGGCGGCCCCGCTGCTGC
GGGTGTTGGCTACGGCGGGGCACCAAGCGGCGTCGACGTCGGTGCCGGCG
GTGCCGGCGGCTATGGCGCGCAGCGTGCGGGGCCGCCCGGTGGCGAGATG
GACTGGAACCACTGGGCCCCGGCGGGCGTCAACGAGCACATGCTACACAT
GGGCGGCAGCCTGGCCCGAAATCTGCTGGCGAGCAACATTTCGCTCTATG
AGCCCGGTGTCTGGGGCGTCTGGCACTCGTTGAAGTATTACTTCGCCGTC
GACAACGCCTACGTGCTGCGCAAGCTCAAGGCGCTGCTGCTACCTGTCGC
TAAGCACGACTGGGCCCGCCGCCGCGCGCCGCCAGAGTTCGGCGCCAATC
CCGCCGCTGCCGCCGGTGCAGCCGGTGCCGCTGCTGCCGCAGGGGATATA
AGACCCGGCAGCATCGGCGGCAGTGGCCAGTCGCCGCCGGCGGGGCCGGC
AGCGCCGCCAGCGGGGCCTGTGGCGCCGCCGCCACCGCGGTACCTGCGGC
CGTGCCTCGACCCCAACGCGCCCGACCTTTACCTGCCGCTGATGGCCTTC
ATCACCTTCGTGCTGACGACGGGCTTTGTGAAGGGCGCCTCGGGCACCTT
CACCCCGGCCGCCCTGACCGAGGCCACCTCGGCCTGCGTCGTCACCCAGC
TGCTGGAAGTGCTCCTTTTCCGGCTGGGGCTTTACCTGCTGGGGGCTCCG
GCGGCGATGCTCGACCTCGTGGCATACACGGGCTACAAGTACGTGGCGCT
GGTGACCAACATGGCGGCGGGCATCGCCTTCGGCTGGACGGGCTACTATG
TGGCGTTTGCGTGGACGGGGCTCATGGCCGCCTACTTCATTCTTAAGACG
ATGGCGGATGCTGTGCCGGCGGGCGGCGGCTCCACCCGTGAGTTCATGCT
GCTGGGCTTATCGGGCCTCCAGCTCCTTGTCATTTGGTGGCTCGGCTACA
CCCGGGAGCTCGTCTAG
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