mRNA_P-wetherbeei_contig51457.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51457.1.1
Unique NamemRNA_P-wetherbeei_contig51457.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51457.1.1 vs. uniprot
Match: A0A349E2E0_9BACT (Uncharacterized protein n=1 Tax=Microscillaceae bacterium TaxID=2053581 RepID=A0A349E2E0_9BACT)

HSP 1 Score: 118 bits (296), Expect = 1.410e-29
Identity = 62/183 (33.88%), Postives = 107/183 (58.47%), Query Frame = 1
Query:   13 PLAACILISLIFQTDHQANMWKHLYALPLPRWSIYAAKSLFGFLLIGFCLVFYSLIMPVAIAFVSGRYPAWGLSNY-SHAAITIFLPIALKGWLASAALCAIQNWISYRFKNFAVPLTFGLGATLVGVIAIQGWKYVGYYPYAFPVLSIMKQDYI-------LLKSVLAGSVIFALSILDAQR 537
            PL   ++  +I+  +H+ N WKHLYALP+P+WSI  +K++F  L++ F L+ Y+  + ++   +S   P   L+ + +H    + +  ALK +L+  ++ A+ NW+  RF +F   +  GL   +   + IQGWKYV YYPYAFP L ++ +  I       ++ S++ G+V++A+S  D  R
Sbjct:   78 PLYIAMMTGVIYGREHRNNTWKHLYALPIPQWSIELSKNIFSLLILLFTLLIYAGFVLLSGYVLSMTNPKMNLAPFDNHLGFNLLM--ALKVFLSMISIWAVHNWVGRRFSSFGYNIGLGLVGVISAGVLIQGWKYVKYYPYAFPALGVLDKQGIHTLFSQPIVYSLIVGAVLWAISFWDIHR 258          
BLAST of mRNA_P-wetherbeei_contig51457.1.1 vs. uniprot
Match: A0A1Q3GJV4_9BACT (Uncharacterized protein n=1 Tax=marine bacterium AO1-C TaxID=1905359 RepID=A0A1Q3GJV4_9BACT)

HSP 1 Score: 111 bits (278), Expect = 6.540e-27
Identity = 63/186 (33.87%), Postives = 103/186 (55.38%), Query Frame = 1
Query:   13 PLAACILISLIFQTDHQANMWKHLYALPLPRWSIYAAKSLFGFLLIGFCLVF----YSLIMPVAIAFVSGRYPAWGLSNYSHAAITIFLPIALKGWLASAALCAIQNWISYRFKNFAVPLTFGLGATLVGVIAIQGWKYVGYYPYAFPVLSIMKQDYI-------LLKSVLAGSVIFALSILDAQR 537
            PL   ++  +I+  +H+ N WKHLYALP+P+WSI  +K++F  LLI  C +F    + L+    ++ V+ +       N+    +   L +A K +L+  ++ AI NW+  RF NF   +  GL   +   + IQGWKYV YYPYAFP L ++ +  I       ++ S++ G+V +A+   D +R
Sbjct:   78 PLYIAMMTGVIYGREHRNNTWKHLYALPIPQWSIELSKNIFS-LLILLCTIFIYAGFILLSGYVLSMVNPKLNIAQFDNH----LGFNLMMAFKVFLSITSIWAIHNWVGRRFSNFGYNIGLGLVGVVSAGVLIQGWKYVKYYPYAFPALGVLDEKSIHTLFSKPVVYSLIVGAVFWAVGFWDIRR 258          
BLAST of mRNA_P-wetherbeei_contig51457.1.1 vs. uniprot
Match: UPI001FA7D65E (ABC transporter permease n=1 Tax=Pontibacter sp. NBU2972 TaxID=2905679 RepID=UPI001FA7D65E)

HSP 1 Score: 100 bits (248), Expect = 1.360e-22
Identity = 61/183 (33.33%), Postives = 101/183 (55.19%), Query Frame = 1
Query:   13 PLAACILISLIFQTDHQANMWKHLYALPLPRWSIYAAKSLFGFLLIGFCLVFYSLIMPVAIAFVSGRYPAWGLSNYSHAAITIFLPIALKGWLASAALCAIQNWISYRFKNFAVPLTFGLGATLVGVIAIQGWKYVGYYPYAFPVL---SIMKQDYILLK-----SVLAGSVIFALSILDAQR 537
            P+   +L S+    +H+AN WKHLYALPLP+ ++Y +K L    L+    V + + + +A   ++   P  G   Y    I IF   + K +LAS  + AIQ W+S RF +FA+ +   + A +  ++A + W+Y+ YYP+A+P++     MK++Y +       S++ G V+F L  LD  R
Sbjct:   68 PVFIALLTSMTNGIEHKANGWKHLYALPLPKSTVYFSKVLITLGLVLLSTVVFIVALIMAGTVLNWLRPELGFGTYEKLDIIIFS--SFKIFLASVVIIAIQFWLSIRFNSFALAMGVAIVAIITTLVANR-WEYINYYPFAYPLMVMKGFMKKEYQVFTEEVVLSMVVGCVVFILGYLDVAR 247          
BLAST of mRNA_P-wetherbeei_contig51457.1.1 vs. uniprot
Match: UPI001F597060 (ABC transporter permease n=5 Tax=Flavobacteriaceae TaxID=49546 RepID=UPI001F597060)

HSP 1 Score: 97.1 bits (240), Expect = 2.470e-21
Identity = 53/154 (34.42%), Postives = 86/154 (55.84%), Query Frame = 1
Query:    7 FFPLAACILISLIFQTDHQANMWKHLYALPLPRWSIYAAKSLFGFLLIGFCLVFYSLIMPVAIAFVSGRYPAWGLSNYSHAAITIFLPIALKGWLASAALCAIQNWISYRFKNFAVPLTFGLGATLVGVIAIQGWKYVGYYPYAFPVLSIMKQD 468
            F P+   ++ SLI Q +H++   KHL+ALP+P+ SIY  K     L I    ++Y + + ++   +   YP  G  N+       +L I +  ++AS  +  IQ W+S+RFKNF +PL FG+   ++G+I  Q  +   Y+PY+F VLS+   D
Sbjct:   73 FIPMFIVLVTSLIMQIEHKSLGIKHLFALPVPKSSIYFGKLSIVILAIIVTYIYYYIAILLSGVLLGFVYPDLGFLNFQPEHFQ-YLKILMTSFVASLGIIGIQFWLSFRFKNFVIPLGFGMFLAIIGIIVSQAPQQSIYFPYSFSVLSVSLGD 225          
BLAST of mRNA_P-wetherbeei_contig51457.1.1 vs. uniprot
Match: A0A6J4JA58_9SPHI (Uncharacterized protein n=1 Tax=uncultured Cytophagales bacterium TaxID=158755 RepID=A0A6J4JA58_9SPHI)

HSP 1 Score: 92.8 bits (229), Expect = 9.470e-20
Identity = 54/157 (34.39%), Postives = 85/157 (54.14%), Query Frame = 1
Query:   10 FPLAACILISLIFQTDHQANMWKHLYALPLPRWSIYAAKSLFGFLLIGFCLVFYSLIMPVAIAFVSGRYPAWGLSNYSHAAITIFLPIALKGW----LASAALCAIQNWISYRFKNFAVPLTFGLGATLVGVIAIQGWKYVGYYPYAFPVLSIMKQD 468
            FP+   +   L+   +HQAN WKH+Y+L +PRW++Y  K L G  L+ FC+    +    A   ++   P +G   Y+   +++ L   L+G+    L+   + A+Q+ IS R+ NF VP  FG   T V   A+ G + + Y PYAFP L+ +K D
Sbjct:   74 FPMYIALQSVLLLNIEHQANTWKHVYSLAVPRWTVYFGKLLLGVGLVCFCIFMLYVFTEGAGLLLALLRPEFGFDKYN---VSVLL---LRGYSKMLLSGLGIVALQHLISTRYHNFLVPAAFGFAMT-VAATALGGQRVIEYLPYAFPALA-LKDD 222          
BLAST of mRNA_P-wetherbeei_contig51457.1.1 vs. uniprot
Match: UPI0018AFB652 (ABC transporter permease n=1 Tax=Pontibacter sp. 172403-2 TaxID=2791028 RepID=UPI0018AFB652)

HSP 1 Score: 92.4 bits (228), Expect = 1.320e-19
Identity = 57/183 (31.15%), Postives = 101/183 (55.19%), Query Frame = 1
Query:   13 PLAACILISLIFQTDHQANMWKHLYALPLPRWSIYAAKSLFGFLLIGFCLVFYSLIMPVAIAFVSGRYPAWGLSNYSHAAITIFLPIALKGWLASAALCAIQNWISYRFKNFAVPLTFGLGATLVGVIAIQGWKYVGYYPYAFPVLSI---MKQD-----YILLKSVLAGSVIFALSILDAQR 537
            P+   +L S+    +H+AN WKHLYALPLP+ ++Y +K+     L+    + + L +  A   +    P  G  NY    I++ L  ++K +LAS  + AIQ W+S R+ +FA+ +   + A +  V+A + W+++ YYP+A+P+++    MKQ        + +S+  G+ +F L  +D  R
Sbjct:   75 PIFIALLTSMTNGIEHKANGWKHLYALPLPKSTVYFSKAALVLGLVACSTLVFMLAILSAGTVLRWLRPDLGFQNYEG--ISMILITSVKIFLASFVIVAIQFWLSMRWSSFALSMGVAIVAIITTVVASR-WEHIHYYPFAYPLMTFNGYMKQSGQFFTEEIWRSLAVGTAVFILGYMDISR 254          
BLAST of mRNA_P-wetherbeei_contig51457.1.1 vs. uniprot
Match: A0A1H5A5M9_9FLAO (Uncharacterized protein n=1 Tax=Tenacibaculum sp. MAR_2010_89 TaxID=1250198 RepID=A0A1H5A5M9_9FLAO)

HSP 1 Score: 92.4 bits (228), Expect = 1.370e-19
Identity = 60/162 (37.04%), Postives = 90/162 (55.56%), Query Frame = 1
Query:    7 FFPLAACILISLIFQTDHQANMWKHLYALPLPRWSIYAAK-SLFGFLLIGFCLVFYSLIMPVAIAFVSGRYPAWGLSNYSHAAITIFLPIALK-------GWLASAALCAIQNWISYRFKNFAVPLTFGLGATLVGVIAIQGWKYVGYYPYAFPVLSIMKQD 468
            F P+   ++ SLI Q +H+A   KHL+ALP+P+WS+Y  K S+  F +I   + F+     VAI F       +    YS  A   F P  LK        ++AS  +  IQ W+S+RFKNF VPL+ G+   ++G+IA Q  + + Y+PY++ +LSI   D
Sbjct:   73 FVPIFIVLITSLIIQVEHKATGIKHLFALPIPKWSVYFGKLSIVLFSIISTYVYFF-----VAILFFGTLLGVF----YSDLAFLDFQPDYLKYIKMLGVSFIASLGIVGIQFWLSFRFKNFIVPLSVGMVFVILGLIAFQAPESI-YFPYSYNILSISLGD 224          
BLAST of mRNA_P-wetherbeei_contig51457.1.1 vs. uniprot
Match: A0A2N1KRP3_9BACT (Uncharacterized protein n=1 Tax=Siphonobacter sp. BAB-5404 TaxID=1864824 RepID=A0A2N1KRP3_9BACT)

HSP 1 Score: 91.7 bits (226), Expect = 2.550e-19
Identity = 57/163 (34.97%), Postives = 90/163 (55.21%), Query Frame = 1
Query:    1 SIFFPLAACILISLIFQTDHQANMWKHLYALPLPRWSIYAAKSLF--GFLLIGFCLVFYSLIMPVAIAFVSGRYPAWGLSNYSHA----AITIFLPIALKGWLASAALCAIQNWISYRFKNFAVPLTFGL-GATLVGVIAIQGWKYVGYYPYAFPVLSIMKQD 468
            ++F P  A ++ SLI   +H++N WK+++  P P+ S++  K L     +L+ F LVF SL +      V+G   A   SNY  A    +  I L   +K ++A+  +  I  W++ R KN  VP+   L G  L  V+ +Q WKYV ++PYAFP+LS M++ 
Sbjct:   70 AVFIPFYAVLMNSLIVNIEHRSNTWKYVFTQPFPKSSVWVGKILLIQSLILLHF-LVFNSLTL------VAGGILALIDSNYGFANHIPSFDIILKFIVKTFIATLGVSGIHYWLATRIKNIIVPIGIALMGIVLSSVLIMQQWKYVDWFPYAFPLLSSMRKS 225          
BLAST of mRNA_P-wetherbeei_contig51457.1.1 vs. uniprot
Match: A0A6P0UMU5_9FLAO (ABC transporter permease subunit n=1 Tax=Leptobacterium flavescens TaxID=472055 RepID=A0A6P0UMU5_9FLAO)

HSP 1 Score: 91.7 bits (226), Expect = 2.780e-19
Identity = 51/157 (32.48%), Postives = 89/157 (56.69%), Query Frame = 1
Query:   13 PLAACILISLIFQTDHQANMWKHLYALPLPRWSIYAAKSLFGFLLIGFCLVFYSLIMPVAIAFVSGRYPAWG----LSNYSHAA-ITIFLPIALKGWLASAALCAIQNWISYRFKNFAVPLTFGLGATLVGVIAIQGWKYVGYYPYAFPVLSIMKQD 468
            P+   ++ SLI Q +H++   KHL+ LP+P+WS+Y     FG L I   LV ++ ++   + F+ G Y   G    L  + H   +++F+ +  + +++   +  +Q W+S+RFKNF VPL  G+   + G+I  Q  + + YYPYA+ +LS+   D
Sbjct:   75 PMFIILVTSLIVQIEHKSLSVKHLFTLPIPKWSVY-----FGKLFIVLGLVLFTYVLFALLVFIVG-YTVGGVHGELQMWEHTPNVSLFVKLLFRSFISVLGIIGLQFWLSFRFKNFIVPLGIGMVLFITGLIVYQAKESI-YYPYAYSMLSLFPLD 224          
BLAST of mRNA_P-wetherbeei_contig51457.1.1 vs. uniprot
Match: A0A2W4NTL8_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W4NTL8_9CHLR)

HSP 1 Score: 91.3 bits (225), Expect = 3.560e-19
Identity = 63/179 (35.20%), Postives = 95/179 (53.07%), Query Frame = 1
Query:   13 PLAACILISLIFQTDHQANMWKHLYALPLPRWSIYAAKSLFGFLLIGFCLVFYSLIMPVAIAFVSGRY-PAWGLS---NYSHAAITIFLPIALKG-WLASAALCAIQNWISYRFKNFAVPLTFGLGATLVGVIAIQGWKYVGYYPYAFPVLSIMKQDYILLKSVLA------GSVIFAL 516
            PL   +  +L+   DH ++ WKHLYALPLPRWSIY AK +  F ++G      S ++ VA A +SG    A GL    +YS       +P  + G + A+  + AI  W+S R+++F V    G+ AT+V  + +   +   YYP+  PV+SI    Y +  + +A      G V+FAL
Sbjct:   72 PLYVTLETALVSGVDHGSSAWKHLYALPLPRWSIYMAKQVINFGIVGL-----STLILVAGALLSGLIVQASGLQPAIDYSAPVPWDKIPSIVSGIFFAAWLIIAIHTWVSMRWRSFTVASAVGIVATVVNFVLLNSRELAPYYPWTQPVVSIQHTLYGMTATSVALAIGFVGGVLFAL 245          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51457.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A349E2E0_9BACT1.410e-2933.88Uncharacterized protein n=1 Tax=Microscillaceae ba... [more]
A0A1Q3GJV4_9BACT6.540e-2733.87Uncharacterized protein n=1 Tax=marine bacterium A... [more]
UPI001FA7D65E1.360e-2233.33ABC transporter permease n=1 Tax=Pontibacter sp. N... [more]
UPI001F5970602.470e-2134.42ABC transporter permease n=5 Tax=Flavobacteriaceae... [more]
A0A6J4JA58_9SPHI9.470e-2034.39Uncharacterized protein n=1 Tax=uncultured Cytopha... [more]
UPI0018AFB6521.320e-1931.15ABC transporter permease n=1 Tax=Pontibacter sp. 1... [more]
A0A1H5A5M9_9FLAO1.370e-1937.04Uncharacterized protein n=1 Tax=Tenacibaculum sp. ... [more]
A0A2N1KRP3_9BACT2.550e-1934.97Uncharacterized protein n=1 Tax=Siphonobacter sp. ... [more]
A0A6P0UMU5_9FLAO2.780e-1932.48ABC transporter permease subunit n=1 Tax=Leptobact... [more]
A0A2W4NTL8_9CHLR3.560e-1935.20Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51457contigP-wetherbeei_contig51457:13..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog313606.M23134_08418
PFAMsABC2_membrane_4
Model size537
Max annot lvl976|Bacteroidetes
KEGG koko:K20461
KEGG TC3.A.1.124.3,3.A.1.124.4,3.A.1.124.5
KEGG Pathwayko02010,map02010
KEGG ModuleM00813
Hectar predicted targeting categorysignal anchor
Exons1
Evalue4.58e-25
EggNOG OGsCOG4200@1|root,COG4200@2|Bacteria,4NSB7@976|Bacteroidetes,47S9M@768503|Cytophagia
DescriptionABC-2 family transporter protein
Cds size537
COG categoryS
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186772.9888315-CDS-P-wetherbeei_contig51457:12..5491683186772.9888315-CDS-P-wetherbeei_contig51457:12..549Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51457 13..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51457.1.1prot_P-wetherbeei_contig51457.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51457 13..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51457.1.1

>prot_P-wetherbeei_contig51457.1.1 ID=prot_P-wetherbeei_contig51457.1.1|Name=mRNA_P-wetherbeei_contig51457.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
SIFFPLAACILISLIFQTDHQANMWKHLYALPLPRWSIYAAKSLFGFLLI
GFCLVFYSLIMPVAIAFVSGRYPAWGLSNYSHAAITIFLPIALKGWLASA
ALCAIQNWISYRFKNFAVPLTFGLGATLVGVIAIQGWKYVGYYPYAFPVL
SIMKQDYILLKSVLAGSVIFALSILDAQR
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mRNA from alignment at P-wetherbeei_contig51457:13..549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51457.1.1 ID=mRNA_P-wetherbeei_contig51457.1.1|Name=mRNA_P-wetherbeei_contig51457.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig51457:13..549+ (Phaeothamnion wetherbeei SAG_119_79)
AGTATATTCTTTCCGCTGGCAGCCTGCATCCTTATTTCTCTGATCTTTCA AACCGATCACCAAGCCAATATGTGGAAGCATTTGTACGCGTTACCACTAC CGCGCTGGAGCATTTATGCGGCTAAAAGCTTATTTGGTTTTTTACTCATC GGATTCTGTCTTGTATTTTACAGTTTAATCATGCCGGTGGCTATTGCATT TGTCAGTGGGCGATATCCAGCCTGGGGCCTTAGCAACTATAGCCATGCTG CTATAACCATTTTCTTACCGATCGCATTGAAAGGATGGCTTGCCAGCGCA GCCTTGTGTGCTATACAGAACTGGATCAGCTATCGCTTTAAGAATTTTGC TGTTCCATTAACCTTTGGGCTTGGGGCAACATTGGTAGGTGTGATCGCCA TCCAGGGTTGGAAATACGTAGGCTATTATCCGTATGCCTTTCCTGTGTTG AGCATAATGAAGCAGGATTACATTCTGCTAAAAAGTGTGCTGGCCGGCAG CGTTATTTTTGCTCTTTCTATATTAGACGCTCAACGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51457:13..549+

>mRNA_P-wetherbeei_contig51457.1.1 ID=mRNA_P-wetherbeei_contig51457.1.1|Name=mRNA_P-wetherbeei_contig51457.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig51457:13..549+ (Phaeothamnion wetherbeei SAG_119_79)
AGTATATTCTTTCCGCTGGCAGCCTGCATCCTTATTTCTCTGATCTTTCA
AACCGATCACCAAGCCAATATGTGGAAGCATTTGTACGCGTTACCACTAC
CGCGCTGGAGCATTTATGCGGCTAAAAGCTTATTTGGTTTTTTACTCATC
GGATTCTGTCTTGTATTTTACAGTTTAATCATGCCGGTGGCTATTGCATT
TGTCAGTGGGCGATATCCAGCCTGGGGCCTTAGCAACTATAGCCATGCTG
CTATAACCATTTTCTTACCGATCGCATTGAAAGGATGGCTTGCCAGCGCA
GCCTTGTGTGCTATACAGAACTGGATCAGCTATCGCTTTAAGAATTTTGC
TGTTCCATTAACCTTTGGGCTTGGGGCAACATTGGTAGGTGTGATCGCCA
TCCAGGGTTGGAAATACGTAGGCTATTATCCGTATGCCTTTCCTGTGTTG
AGCATAATGAAGCAGGATTACATTCTGCTAAAAAGTGTGCTGGCCGGCAG
CGTTATTTTTGCTCTTTCTATATTAGACGCTCAACGT
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