mRNA_P-wetherbeei_contig5145.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5145.3.1
Unique NamemRNA_P-wetherbeei_contig5145.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5145.3.1 vs. uniprot
Match: A0A6V1LIM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LIM7_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 2.430e-12
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 2 
Query:  188 KDTLNVVRFSDPKVEGVALYLSDFSRPLTERLQKDFFS 301
            KDTLNV  F+DPKVEGV LYLSDF+RP+TERLQKDFFS
Sbjct:   81 KDTLNVEAFADPKVEGVTLYLSDFTRPITERLQKDFFS 118
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BLAST of mRNA_P-wetherbeei_contig5145.3.1 vs. uniprot
Match: A0A7S2UP84_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UP84_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.120e-11
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 2 
Query:  188 KDTLNVVRFSDPKVEGVALYLSDFSRPLTERLQKDFFS 301
            KDTLN+ RF DPKV+GV LY+S+F RPLTERLQKDFFS
Sbjct:  115 KDTLNIERFDDPKVQGVTLYISNFQRPLTERLQKDFFS 152
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BLAST of mRNA_P-wetherbeei_contig5145.3.1 vs. uniprot
Match: A0A4D9D903_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D903_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.420e-11
Identity = 36/69 (52.17%), Postives = 44/69 (63.77%), Query Frame = 2 
Query:   95 AFLQRVAVSLQRPLLTSPISSLLLLSPP*PAKDTLNVVRFSDPKVEGVALYLSDFSRPLTERLQKDFFS 301
            AF+ R A   +R +   P S L+        KD++NV  F DPKV+GV LY+SDF RPLTERL KDFFS
Sbjct:  157 AFVARAASDERRQVADIPASGLIF-------KDSINVEAFQDPKVQGVTLYISDFRRPLTERLAKDFFS 218
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BLAST of mRNA_P-wetherbeei_contig5145.3.1 vs. uniprot
Match: W7TIH3_9STRA (Uncharacterized protein family CreA n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIH3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.270e-11
Identity = 36/69 (52.17%), Postives = 44/69 (63.77%), Query Frame = 2 
Query:   95 AFLQRVAVSLQRPLLTSPISSLLLLSPP*PAKDTLNVVRFSDPKVEGVALYLSDFSRPLTERLQKDFFS 301
            AF+ R A   +R +   P S L+        KD++NV  F DPKV+GV LY+SDF RPLTERL KDFFS
Sbjct:  210 AFVARAASDERRQVADIPASGLIF-------KDSINVEAFQDPKVQGVTLYISDFRRPLTERLAKDFFS 271
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BLAST of mRNA_P-wetherbeei_contig5145.3.1 vs. uniprot
Match: A0A7S1K3H2_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1K3H2_9ALVE)

HSP 1 Score: 64.3 bits (155), Expect = 6.690e-11
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 2 
Query:  188 KDTLNVVRFSDPKVEGVALYLSDFSRPLTERLQKDFFS 301
            KDTLNV  +SDPKVEGV +Y++DF+RP+TER QKDFFS
Sbjct:   47 KDTLNVEAWSDPKVEGVTIYIADFARPITERFQKDFFS 84
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BLAST of mRNA_P-wetherbeei_contig5145.3.1 vs. uniprot
Match: A0A0G4FDW3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FDW3_VITBC)

HSP 1 Score: 65.1 bits (157), Expect = 7.110e-11
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 2 
Query:  188 KDTLNVVRFSDPKVEGVALYLSDFSRPLTERLQKDFFS 301
            KDTLNV  +SDPKVEGV +Y++DF+RP+TER+QKDFFS
Sbjct:   63 KDTLNVEAWSDPKVEGVTIYIADFARPITERIQKDFFS 100
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BLAST of mRNA_P-wetherbeei_contig5145.3.1 vs. uniprot
Match: A0A7S2MEH8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MEH8_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.450e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 2 
Query:  188 KDTLNVVRFSDPKVEGVALYLSDFSRPLTERLQKDFFS 301
            KDTLN+  F DPKV GV LY+S+F RPLTERLQKDFFS
Sbjct:  128 KDTLNIESFEDPKVRGVTLYISNFQRPLTERLQKDFFS 165
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BLAST of mRNA_P-wetherbeei_contig5145.3.1 vs. uniprot
Match: A0A6T6VPC6_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A6T6VPC6_9CRYP)

HSP 1 Score: 63.5 bits (153), Expect = 5.290e-10
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:  188 KDTLNVVRFSDPKVEGVALYLSDFSRPLTERLQKDFFS 301
            KDT+ V  F DPKV+GVALY+SDF RP+TERLQK+FFS
Sbjct:  104 KDTIKVTSFEDPKVKGVALYISDFQRPITERLQKNFFS 141
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BLAST of mRNA_P-wetherbeei_contig5145.3.1 vs. uniprot
Match: A0A0G4FDA5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FDA5_VITBC)

HSP 1 Score: 64.3 bits (155), Expect = 6.820e-10
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 2 
Query:  188 KDTLNVVRFSDPKVEGVALYLSDFSRPLTERLQKDFFS 301
            KDTLNV  +SDPKVEGV +Y++DF+RP+TER QKDFFS
Sbjct:  279 KDTLNVEAWSDPKVEGVTIYIADFARPITERFQKDFFS 316
[Close]
BLAST of mRNA_P-wetherbeei_contig5145.3.1 vs. uniprot
Match: A0A7S2DB59_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DB59_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 8.000e-10
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:  188 KDTLNVVRFSDPKVEGVALYLSDFSRPLTERLQKDFFS 301
            KDTL+V  F DPKV+GV LY+SDFS+P+TERLQ DFFS
Sbjct:   83 KDTLDVTAFDDPKVQGVTLYVSDFSKPITERLQGDFFS 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5145.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1LIM7_HETAK2.430e-1284.21Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UP84_9STRA2.120e-1178.95Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A4D9D903_9STRA3.420e-1152.17Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TIH3_9STRA5.270e-1152.17Uncharacterized protein family CreA n=1 Tax=Nannoc... [more]
A0A7S1K3H2_9ALVE6.690e-1173.68Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A0G4FDW3_VITBC7.110e-1173.68Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S2MEH8_9STRA3.450e-1076.32Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6T6VPC6_9CRYP5.290e-1073.68Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A0G4FDA5_VITBC6.820e-1073.68Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S2DB59_9STRA8.000e-1073.68Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5145contigP-wetherbeei_contig5145:1892..2410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size304
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186772.7797997-CDS-P-wetherbeei_contig5145:1891..21171683186772.7797997-CDS-P-wetherbeei_contig5145:1891..2117Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5145 1892..2117 +
1683186772.8056753-CDS-P-wetherbeei_contig5145:2333..24101683186772.8056753-CDS-P-wetherbeei_contig5145:2333..2410Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5145 2334..2410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5145.3.1prot_P-wetherbeei_contig5145.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5145 1892..2410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5145.3.1

>prot_P-wetherbeei_contig5145.3.1 ID=prot_P-wetherbeei_contig5145.3.1|Name=mRNA_P-wetherbeei_contig5145.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
LIGAPAAPSVADDKTTVGEISASGFIFKVKCGIFATRGREFAKATLNFSY
LFTPSLVSSVTRKGHVERGSVQRPEGGGRGALPERLLSAADGAPPEGFFF
*
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mRNA from alignment at P-wetherbeei_contig5145:1892..2410+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5145.3.1 ID=mRNA_P-wetherbeei_contig5145.3.1|Name=mRNA_P-wetherbeei_contig5145.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig5145:1892..2410+ (Phaeothamnion wetherbeei SAG_119_79)
TTGATCGGGGCGCCAGCAGCTCCTTCTGTTGCCGATGACAAGACCACCGT
GGGCGAGATCTCGGCATCAGGCTTCATTTTCAAGGTGAAGTGTGGCATTT
TTGCAACGCGTGGCCGTGAGTTTGCAAAGGCCACTCTTAACTTCTCCTAT
CTCTTCACTCCTTCTCTTGTCTCCTCCGTGACCCGCAAAGGACACGTTGA
ACGTGGTTCGGTTCAGCGACCCGAAGGCAAGTATTAGGCTTTCAATGGAA
TGTCGCGCATCCTGCCGTTCCAGCTTTTCCATGCAGTTTCCACAACCCAG
AGAGAACGGGTTTCTTTCTTTCCTTTCCCGGGAAACTAGGGAACAAACTT
TTAACGACCCGTTCCCGCCCTCCTTCCTCCTCGTATCGACCCCACTTCTT
TCTTCTTCTTCTGCCTTCTTACACTCCTCCCACGTTCGCCAGGTGGAGGG
CGTGGCGCTCTACCTGAGCGACTTCTCTCGGCCGCTGACGGAGCGCCTCC
AGAAGGATTTTTTTTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5145:1892..2410+

>mRNA_P-wetherbeei_contig5145.3.1 ID=mRNA_P-wetherbeei_contig5145.3.1|Name=mRNA_P-wetherbeei_contig5145.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig5145:1892..2410+ (Phaeothamnion wetherbeei SAG_119_79)
TTGATCGGGGCGCCAGCAGCTCCTTCTGTTGCCGATGACAAGACCACCGT
GGGCGAGATCTCGGCATCAGGCTTCATTTTCAAGGTGAAGTGTGGCATTT
TTGCAACGCGTGGCCGTGAGTTTGCAAAGGCCACTCTTAACTTCTCCTAT
CTCTTCACTCCTTCTCTTGTCTCCTCCGTGACCCGCAAAGGACACGTTGA
ACGTGGTTCGGTTCAGCGACCCGAAGGTGGAGGGCGTGGCGCTCTACCTG
AGCGACTTCTCTCGGCCGCTGACGGAGCGCCTCCAGAAGGATTTTTTTTC
TGA
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